Wall clock time and date at job start Tue Mar 9 2021 13:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86299 * 109.46856 * 2 1 4 4 C 1.86294 * 109.47479 * 239.99620 * 2 1 3 5 5 C 1.86306 * 109.46829 * 119.99628 * 2 1 3 6 6 C 1.52996 * 109.47149 * 60.00258 * 5 2 1 7 7 C 1.52999 * 109.47372 * 179.97438 * 6 5 2 8 8 N 1.46495 * 109.47467 * 180.02562 * 7 6 5 9 9 C 1.34772 * 120.00287 * 180.02562 * 8 7 6 10 10 O 1.21557 * 120.00310 * 359.97438 * 9 8 7 11 11 C 1.47845 * 120.00218 * 179.97438 * 9 8 7 12 12 C 1.39986 * 120.55758 * 179.97438 * 11 9 8 13 13 C 1.38398 * 118.28423 * 180.02562 * 12 11 9 14 14 C 1.50705 * 120.34879 * 179.97438 * 13 12 11 15 15 O 1.42904 * 109.46435 * 65.00176 * 14 13 12 16 16 Si 1.86298 * 109.47238 * 185.00282 * 14 13 12 17 17 H 1.48488 * 109.47231 * 60.00270 * 16 14 13 18 18 H 1.48505 * 109.46766 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46970 * 299.99884 * 16 14 13 20 20 C 1.38311 * 119.30542 * 0.02562 * 13 12 11 21 21 N 1.31956 * 121.08154 * 359.97438 * 20 13 12 22 22 C 1.31664 * 121.87842 * 359.97438 * 21 20 13 23 23 H 1.08992 * 109.47329 * 299.99932 * 1 2 3 24 24 H 1.09007 * 109.46751 * 60.00514 * 1 2 3 25 25 H 1.09001 * 109.46783 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46690 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47202 * 299.99316 * 3 2 1 28 28 H 1.08996 * 109.47594 * 59.99920 * 3 2 1 29 29 H 1.09001 * 109.47537 * 300.00057 * 4 2 1 30 30 H 1.08998 * 109.47152 * 60.00334 * 4 2 1 31 31 H 1.08999 * 109.47372 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.47122 * 300.00141 * 5 2 1 33 33 H 1.08999 * 109.47020 * 180.02562 * 5 2 1 34 34 H 1.09004 * 109.47204 * 59.99933 * 6 5 2 35 35 H 1.09003 * 109.47456 * 299.99784 * 6 5 2 36 36 H 1.09004 * 109.46906 * 59.99879 * 7 6 5 37 37 H 1.09003 * 109.46759 * 300.00339 * 7 6 5 38 38 H 0.97004 * 119.99800 * 359.97438 * 8 7 6 39 39 H 1.07998 * 120.86134 * 0.02562 * 12 11 9 40 40 H 1.08995 * 109.47022 * 305.00400 * 14 13 12 41 41 H 0.96695 * 114.00323 * 60.00908 * 15 14 13 42 42 H 1.08000 * 119.45634 * 180.02562 * 20 13 12 43 43 H 1.08003 * 119.71519 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8783 -1.5210 5 6 2.4839 -0.8782 1.5213 6 6 1.9740 -2.3206 1.5213 7 6 2.4844 -3.0420 2.7703 8 7 1.9966 -4.4234 2.7700 9 6 2.3222 -5.2533 3.7808 10 8 3.0210 -4.8557 4.6925 11 6 1.8294 -6.6472 3.7808 12 6 2.1609 -7.5192 4.8245 13 6 1.6746 -8.8140 4.7767 14 6 2.0031 -9.7919 5.8754 15 8 1.4146 -9.3480 7.0996 16 14 1.3277 -11.4712 5.4346 17 1 1.9392 -11.9324 4.1625 18 1 1.6510 -12.4345 6.5176 19 1 -0.1460 -11.3851 5.2729 20 6 0.8847 -9.2015 3.7095 21 7 0.5884 -8.3575 2.7395 22 6 1.0261 -7.1158 2.7403 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.5740 1.7564 0.0005 27 1 2.1207 2.2703 -0.8900 28 1 2.1206 2.2703 0.8899 29 1 2.1208 -1.9060 -1.5210 30 1 2.1208 -0.3645 -2.4110 31 1 3.5741 -0.8787 -1.5207 32 1 2.1205 -0.3643 2.4112 33 1 3.5739 -0.8778 1.5215 34 1 2.3374 -2.8345 0.6313 35 1 0.8839 -2.3207 1.5213 36 1 2.1213 -2.5283 3.6605 37 1 3.5744 -3.0420 2.7699 38 1 1.4386 -4.7406 2.0427 39 1 2.7802 -7.1901 5.6458 40 1 3.0848 -9.8550 5.9941 41 1 0.4515 -9.2686 7.0670 42 1 0.5035 -10.2113 3.6700 43 1 0.7618 -6.4544 1.9285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704008_13287814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:23 Heat of formation + Delta-G solvation = -86.202214 kcal Electronic energy + Delta-G solvation = -21010.568229 eV Core-core repulsion = 17792.768916 eV Total energy + Delta-G solvation = -3217.799313 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.91881 -40.34441 -37.93523 -36.87703 -34.04623 -33.78336 -32.65217 -29.40962 -28.28877 -28.24831 -27.47858 -27.23534 -25.02280 -23.83188 -22.49386 -21.50528 -19.25450 -18.23758 -18.03922 -17.70547 -16.86915 -16.68181 -16.36266 -15.95734 -15.60557 -15.10404 -14.93564 -14.64086 -14.31400 -14.14371 -14.04356 -13.96120 -13.76331 -13.55080 -13.43117 -13.27945 -13.01491 -13.00191 -12.94546 -12.73004 -12.47340 -12.16497 -12.02873 -11.69353 -11.49607 -11.09932 -10.68715 -10.62829 -10.60734 -10.58141 -10.40434 -10.35818 -10.13970 -0.60731 -0.04718 1.10223 1.45189 1.51344 1.63327 1.87020 1.92931 2.03718 2.09914 2.12956 2.60671 2.78943 3.08083 3.36745 3.46267 3.63936 3.70331 3.74978 4.07125 4.12763 4.13827 4.29256 4.38263 4.56578 4.71102 4.77984 4.82455 4.83933 4.84205 4.89876 4.89906 4.91392 4.92697 4.93344 5.09412 5.25659 5.29047 5.32261 5.53914 5.63249 5.70924 5.72730 6.36229 6.60181 6.64505 7.03004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.467 4.467 2 Si 1.091 2.909 3 C -0.475 4.475 4 C -0.467 4.467 5 C -0.422 4.422 6 C -0.120 4.120 7 C 0.116 3.884 8 N -0.709 5.709 9 C 0.560 3.440 10 O -0.577 6.577 11 C -0.196 4.196 12 C 0.001 3.999 13 C -0.175 4.175 14 C -0.080 4.080 15 O -0.551 6.551 16 Si 0.981 3.019 17 H -0.250 1.250 18 H -0.270 1.270 19 H -0.241 1.241 20 C 0.116 3.884 21 N -0.495 5.495 22 C 0.146 3.854 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.416 0.584 39 H 0.141 0.859 40 H 0.127 0.873 41 H 0.390 0.610 42 H 0.173 0.827 43 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.831 -0.384 -4.273 5.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.573 4.573 2 Si 1.282 2.718 3 C -0.581 4.581 4 C -0.573 4.573 5 C -0.507 4.507 6 C -0.157 4.157 7 C -0.007 4.007 8 N -0.362 5.362 9 C 0.347 3.653 10 O -0.458 6.458 11 C -0.201 4.201 12 C -0.026 4.026 13 C -0.177 4.177 14 C -0.190 4.190 15 O -0.358 6.358 16 Si 0.803 3.197 17 H -0.173 1.173 18 H -0.194 1.194 19 H -0.164 1.164 20 C -0.039 4.039 21 N -0.203 5.203 22 C -0.013 4.013 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.255 0.745 39 H 0.159 0.841 40 H 0.145 0.855 41 H 0.240 0.760 42 H 0.190 0.810 43 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -2.570 -1.153 -4.360 5.191 hybrid contribution 0.205 0.865 0.542 1.041 sum -2.365 -0.288 -3.819 4.501 Atomic orbital electron populations 1.26355 1.22167 1.04677 1.04074 0.77949 0.65034 0.64227 0.64627 1.26445 1.06270 1.21258 1.04080 1.26355 1.06205 1.08657 1.16059 1.26294 1.06263 1.01379 1.16732 1.21486 1.02310 0.95472 0.96461 1.21618 0.99058 0.79982 1.00029 1.45883 1.53103 1.12565 1.24627 1.18255 0.79671 0.85314 0.82049 1.90798 1.39785 1.77696 1.37520 1.21037 1.04642 0.95044 0.99385 1.21682 0.93272 0.91715 0.95898 1.21455 1.00711 0.96382 0.99165 1.25110 1.04519 1.05122 0.84271 1.86530 1.26982 1.90187 1.32140 0.85227 0.80682 0.73883 0.79861 1.17348 1.19438 1.16418 1.23213 0.92276 0.99845 0.88605 1.67792 1.22200 1.03915 1.26348 1.23466 0.89727 0.92268 0.95806 0.91582 0.91761 0.90639 0.91593 0.91679 0.91593 0.90642 0.91757 0.91587 0.90413 0.90412 0.89447 0.89439 0.92468 0.92462 0.74524 0.84107 0.85492 0.76020 0.81044 0.78979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.73 8.65 113.37 0.98 3.71 16 2 Si 1.09 -8.92 12.19 68.60 0.84 -8.09 16 3 C -0.48 1.73 8.65 113.37 0.98 2.71 16 4 C -0.47 2.73 8.65 113.37 0.98 3.71 16 5 C -0.42 2.83 4.45 71.98 0.32 3.15 16 6 C -0.12 0.88 4.70 30.59 0.14 1.02 16 7 C 0.12 -0.15 5.67 86.38 0.49 0.34 16 8 N -0.71 1.37 5.51 -465.98 -2.57 -1.20 16 9 C 0.56 2.93 7.78 86.79 0.68 3.60 16 10 O -0.58 -8.26 16.42 -3.89 -0.06 -8.33 16 11 C -0.20 -0.44 5.89 -19.99 -0.12 -0.56 16 12 C 0.00 0.00 9.38 22.73 0.21 0.22 16 13 C -0.17 0.02 5.35 -19.81 -0.11 -0.09 16 14 C -0.08 0.19 2.82 71.24 0.20 0.39 16 15 O -0.55 0.18 12.84 -148.98 -1.91 -1.73 16 16 Si 0.98 -3.94 25.16 68.60 1.73 -2.21 16 17 H -0.25 0.83 7.11 99.48 0.71 1.53 16 18 H -0.27 0.03 7.11 99.48 0.71 0.74 16 19 H -0.24 1.21 7.05 99.48 0.70 1.91 16 20 C 0.12 -0.04 9.84 84.69 0.83 0.79 16 21 N -0.49 -0.66 10.35 -194.76 -2.01 -2.67 16 22 C 0.15 -0.23 10.71 85.04 0.91 0.68 16 23 H 0.06 -0.33 7.96 -2.39 -0.02 -0.35 16 24 H 0.06 -0.30 7.96 -2.38 -0.02 -0.32 16 25 H 0.07 -0.53 7.79 -2.39 -0.02 -0.55 16 26 H 0.06 -0.20 7.96 -2.38 -0.02 -0.22 16 27 H 0.06 -0.19 7.96 -2.39 -0.02 -0.21 16 28 H 0.06 -0.20 7.96 -2.39 -0.02 -0.22 16 29 H 0.07 -0.53 7.79 -2.39 -0.02 -0.55 16 30 H 0.06 -0.30 7.96 -2.39 -0.02 -0.32 16 31 H 0.06 -0.33 7.96 -2.39 -0.02 -0.34 16 32 H 0.08 -0.46 7.96 -2.39 -0.02 -0.48 16 33 H 0.08 -0.46 7.96 -2.39 -0.02 -0.48 16 34 H 0.09 -0.87 7.79 -2.39 -0.02 -0.89 16 35 H 0.09 -0.87 7.79 -2.39 -0.02 -0.89 16 36 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.42 -3.78 6.54 -92.71 -0.61 -4.39 16 39 H 0.14 0.78 7.74 -2.91 -0.02 0.76 16 40 H 0.13 -0.45 7.96 -2.39 -0.02 -0.47 16 41 H 0.39 -2.79 8.70 -74.06 -0.64 -3.43 16 42 H 0.17 -0.74 4.87 -2.91 -0.01 -0.75 16 43 H 0.19 -1.81 6.42 -2.91 -0.02 -1.83 16 Total: 0.00 -19.14 357.63 3.02 -16.13 By element: Atomic # 1 Polarization: -12.10 SS G_CDS: 0.51 Total: -11.59 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: 6.51 Total: 19.69 kcal Atomic # 7 Polarization: 0.71 SS G_CDS: -4.58 Total: -3.87 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -1.98 Total: -10.06 kcal Atomic # 14 Polarization: -12.86 SS G_CDS: 2.56 Total: -10.30 kcal Total: -19.14 3.02 -16.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_13287814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.073 kcal (2) G-P(sol) polarization free energy of solvation -19.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds