Wall clock time and date at job start Tue Mar 9 2021 13:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36411 * 125.80267 * 2 1 4 4 C 1.47375 * 127.19550 * 0.05157 * 3 2 1 5 5 O 1.21617 * 119.99784 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00307 * 179.97438 * 4 3 2 7 7 C 1.46502 * 120.00092 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.46995 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.47066 * 180.02562 * 8 7 6 10 10 Si 1.86298 * 109.47082 * 180.02562 * 9 8 7 11 11 C 1.86290 * 109.47324 * 60.00024 * 10 9 8 12 12 C 1.86302 * 109.47078 * 179.97438 * 10 9 8 13 13 C 1.86303 * 109.47123 * 299.99443 * 10 9 8 14 14 C 1.47020 * 105.61474 * 180.02562 * 3 2 1 15 15 C 1.34184 * 105.95357 * 359.97438 * 14 3 2 16 16 C 1.50700 * 125.43720 * 179.97438 * 15 14 3 17 17 O 1.42904 * 109.47044 * 300.00136 * 16 15 14 18 18 Si 1.86295 * 109.46976 * 180.02562 * 16 15 14 19 19 H 1.48498 * 109.47228 * 60.00226 * 18 16 15 20 20 H 1.48504 * 109.46859 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47042 * 299.99546 * 18 16 15 22 22 O 1.33658 * 125.79718 * 180.02562 * 2 1 3 23 23 H 1.08996 * 109.47763 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47221 * 299.95358 * 1 2 3 25 25 H 1.09000 * 109.47096 * 59.95447 * 1 2 3 26 26 H 0.97006 * 119.99926 * 0.02562 * 6 4 3 27 27 H 1.08994 * 109.47211 * 300.00454 * 7 6 4 28 28 H 1.09002 * 109.46934 * 60.00179 * 7 6 4 29 29 H 1.09002 * 109.47318 * 299.99968 * 8 7 6 30 30 H 1.09002 * 109.47170 * 60.00279 * 8 7 6 31 31 H 1.09002 * 109.46766 * 299.99988 * 9 8 7 32 32 H 1.09002 * 109.47159 * 59.99954 * 9 8 7 33 33 H 1.08996 * 109.47782 * 59.99809 * 11 10 9 34 34 H 1.09002 * 109.47109 * 180.02562 * 11 10 9 35 35 H 1.09009 * 109.47136 * 299.99597 * 11 10 9 36 36 H 1.09002 * 109.47138 * 59.99796 * 12 10 9 37 37 H 1.08994 * 109.47452 * 179.97438 * 12 10 9 38 38 H 1.09002 * 109.46790 * 299.99828 * 12 10 9 39 39 H 1.09005 * 109.46718 * 60.00178 * 13 10 9 40 40 H 1.09002 * 109.46847 * 179.97438 * 13 10 9 41 41 H 1.08993 * 109.47080 * 300.00375 * 13 10 9 42 42 H 1.07999 * 127.02375 * 180.26023 * 14 3 2 43 43 H 1.09006 * 109.47066 * 59.99783 * 16 15 14 44 44 H 0.96697 * 114.00267 * 299.99962 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1063 0.0000 4 6 1.8741 2.5157 0.0011 5 8 0.6891 2.7892 0.0016 6 7 2.7931 3.5014 0.0014 7 6 2.3647 4.9024 0.0019 8 6 3.5950 5.8119 0.0016 9 6 3.1476 7.2751 0.0028 10 14 4.6457 8.3825 0.0016 11 6 5.6654 8.0462 -1.5207 12 6 4.1009 10.1641 0.0022 13 6 5.6687 8.0449 1.5216 14 6 3.6849 0.5990 -0.0006 15 6 3.5858 -0.7392 -0.0004 16 6 4.7458 -1.7012 -0.0014 17 8 5.5414 -1.4869 -1.1690 18 14 4.1024 -3.4496 -0.0013 19 1 3.2738 -3.6722 -1.2133 20 1 5.2455 -4.3976 -0.0029 21 1 3.2755 -3.6727 1.2118 22 8 2.2888 -1.0841 -0.0005 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5131 0.8904 25 1 -0.3633 0.5145 -0.8896 26 1 3.7383 3.2833 0.0006 27 1 1.7671 5.0999 -0.8879 28 1 1.7671 5.0992 0.8920 29 1 4.1930 5.6146 0.8913 30 1 4.1923 5.6150 -0.8887 31 1 2.5494 7.4727 -0.8867 32 1 2.5506 7.4717 0.8933 33 1 5.0670 8.2438 -2.4100 34 1 6.5422 8.6939 -1.5211 35 1 5.9843 7.0038 -1.5215 36 1 3.5040 10.3612 0.8927 37 1 4.9773 10.8121 0.0020 38 1 3.5026 10.3613 -0.8873 39 1 5.9875 7.0025 1.5208 40 1 6.5455 8.6926 1.5206 41 1 5.0720 8.2417 2.4122 42 1 4.5928 1.1838 0.0031 43 1 5.3544 -1.5375 0.8880 44 1 5.0634 -1.6154 -1.9997 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9704008_13308374.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:28 Heat of formation + Delta-G solvation = -117.630257 kcal Electronic energy + Delta-G solvation = -21919.742952 eV Core-core repulsion = 18575.550677 eV Total energy + Delta-G solvation = -3344.192275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.72496 -40.32218 -38.11194 -36.72163 -34.25286 -33.45302 -32.94198 -29.65869 -29.41549 -28.46141 -28.45793 -27.24866 -25.53594 -23.91740 -22.62786 -21.95324 -20.50261 -18.93758 -17.96623 -17.69390 -16.91022 -16.70670 -16.66814 -15.94684 -15.90778 -15.25439 -15.00767 -14.61208 -14.28169 -14.24351 -14.18664 -14.09745 -13.98446 -13.87921 -13.84738 -13.46539 -13.42230 -13.15890 -13.14033 -13.12418 -12.93040 -12.83674 -12.61044 -12.23829 -12.09667 -11.86593 -11.05450 -10.86882 -10.84253 -10.83057 -10.65722 -10.53238 -10.02190 -9.52334 0.33459 0.84439 0.99873 1.34239 1.41730 1.69423 1.74501 1.83401 1.84938 1.86861 2.29612 2.42795 2.60761 3.14360 3.38781 3.77058 3.79793 4.00838 4.09156 4.14529 4.24186 4.28618 4.44016 4.59768 4.63905 4.64724 4.66327 4.68844 4.71353 4.72605 4.73500 4.73793 4.75906 4.78490 4.99482 5.11303 5.13031 5.23398 5.31173 5.44215 5.51257 5.51919 5.52473 5.92463 6.30504 6.56798 7.30765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.093 3.907 3 C -0.253 4.253 4 C 0.590 3.410 5 O -0.540 6.540 6 N -0.726 5.726 7 C 0.120 3.880 8 C -0.121 4.121 9 C -0.411 4.411 10 Si 1.012 2.988 11 C -0.451 4.451 12 C -0.452 4.452 13 C -0.451 4.451 14 C -0.146 4.146 15 C -0.060 4.060 16 C -0.040 4.040 17 O -0.529 6.529 18 Si 0.956 3.044 19 H -0.249 1.249 20 H -0.245 1.245 21 H -0.246 1.246 22 O -0.173 6.173 23 H 0.079 0.921 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.401 0.599 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.160 0.840 43 H 0.137 0.863 44 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.513 0.059 -0.097 2.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.040 3.960 3 C -0.257 4.257 4 C 0.378 3.622 5 O -0.419 6.419 6 N -0.378 5.378 7 C -0.003 4.003 8 C -0.159 4.159 9 C -0.497 4.497 10 Si 1.208 2.792 11 C -0.559 4.559 12 C -0.560 4.560 13 C -0.558 4.558 14 C -0.165 4.165 15 C -0.108 4.108 16 C -0.150 4.150 17 O -0.334 6.334 18 Si 0.776 3.224 19 H -0.172 1.172 20 H -0.168 1.168 21 H -0.170 1.170 22 O -0.070 6.070 23 H 0.098 0.902 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.235 0.765 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.177 0.823 43 H 0.154 0.846 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.707 -0.756 0.347 1.899 hybrid contribution 0.337 0.575 -0.365 0.760 sum 2.044 -0.182 -0.019 2.053 Atomic orbital electron populations 1.20557 0.83324 1.03965 1.05509 1.22894 0.94071 0.82855 0.96223 1.21161 0.93265 0.93863 1.17409 1.17168 0.85448 0.83701 0.75881 1.90800 1.16555 1.84151 1.50385 1.45834 1.09755 1.06311 1.75856 1.21512 0.97327 0.78864 1.02593 1.21425 0.97198 0.94482 1.02791 1.26141 1.15154 1.03134 1.05242 0.79164 0.66423 0.66585 0.67026 1.26170 1.09341 1.04873 1.15471 1.26145 1.05835 1.19552 1.04431 1.26169 1.09371 1.04872 1.15437 1.22577 0.96454 0.93412 1.04055 1.22660 0.82833 0.95821 1.09442 1.24364 0.90466 1.07445 0.92734 1.86567 1.38239 1.93340 1.15303 0.85527 0.80084 0.73984 0.82789 1.17166 1.16810 1.16960 1.83676 1.16524 1.35198 1.71598 0.90249 0.88276 0.88274 0.76505 0.91373 0.91362 0.91066 0.91053 0.90260 0.90256 0.91291 0.91328 0.91317 0.91281 0.91288 0.91274 0.91321 0.91327 0.91293 0.82275 0.84581 0.77055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.03 9.14 36.01 0.33 0.30 16 2 C 0.09 0.20 7.37 -34.97 -0.26 -0.06 16 3 C -0.25 -0.59 6.31 -103.28 -0.65 -1.25 16 4 C 0.59 2.01 7.81 -12.54 -0.10 1.91 16 5 O -0.54 -3.43 15.66 5.26 0.08 -3.35 16 6 N -0.73 -0.44 5.55 -61.40 -0.34 -0.78 16 7 C 0.12 0.03 5.67 -4.04 -0.02 0.00 16 8 C -0.12 0.27 4.70 -26.73 -0.13 0.15 16 9 C -0.41 1.03 4.45 37.16 0.17 1.20 16 10 Si 1.01 -3.35 12.19 -169.99 -2.07 -5.42 16 11 C -0.45 0.93 8.65 101.05 0.87 1.80 16 12 C -0.45 0.76 8.65 101.05 0.87 1.63 16 13 C -0.45 0.93 8.65 101.05 0.87 1.81 16 14 C -0.15 -0.07 10.46 -37.45 -0.39 -0.46 16 15 C -0.06 -0.03 6.20 -35.74 -0.22 -0.25 16 16 C -0.04 0.06 2.98 36.01 0.11 0.16 16 17 O -0.53 0.60 12.86 -35.23 -0.45 0.15 16 18 Si 0.96 -0.90 27.37 -169.99 -4.65 -5.55 16 19 H -0.25 0.00 7.11 56.52 0.40 0.40 16 20 H -0.24 0.05 7.11 56.52 0.40 0.45 16 21 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 22 O -0.17 -0.32 8.89 7.66 0.07 -0.25 16 23 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 24 H 0.10 0.06 8.08 -51.93 -0.42 -0.36 16 25 H 0.10 0.05 8.08 -51.93 -0.42 -0.37 16 26 H 0.40 -0.73 7.64 -40.82 -0.31 -1.04 16 27 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 28 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.07 -0.21 7.79 -51.93 -0.40 -0.62 16 30 H 0.07 -0.21 7.79 -51.93 -0.40 -0.62 16 31 H 0.08 -0.18 7.96 -51.93 -0.41 -0.60 16 32 H 0.08 -0.19 7.96 -51.93 -0.41 -0.60 16 33 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 34 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 35 H 0.07 -0.15 7.79 -51.92 -0.40 -0.55 16 36 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 37 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 38 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 39 H 0.07 -0.15 7.79 -51.93 -0.40 -0.56 16 40 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 41 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 42 H 0.16 -0.28 7.74 -52.49 -0.41 -0.69 16 43 H 0.14 -0.40 7.96 -51.93 -0.41 -0.82 16 44 H 0.38 -1.55 8.70 45.56 0.40 -1.15 16 LS Contribution 370.37 15.07 5.58 5.58 Total: 0.00 -7.05 370.37 -7.31 -14.36 By element: Atomic # 1 Polarization: -4.71 SS G_CDS: -6.98 Total: -11.68 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 1.45 Total: 6.93 kcal Atomic # 7 Polarization: -0.44 SS G_CDS: -0.34 Total: -0.78 kcal Atomic # 8 Polarization: -3.14 SS G_CDS: -0.30 Total: -3.44 kcal Atomic # 14 Polarization: -4.25 SS G_CDS: -6.72 Total: -10.97 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -7.05 -7.31 -14.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_13308374.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.271 kcal (2) G-P(sol) polarization free energy of solvation -7.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds