Wall clock time and date at job start Tue Mar 9 2021 13:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36411 * 125.80267 * 2 1 4 4 C 1.47375 * 127.19550 * 0.05157 * 3 2 1 5 5 O 1.21617 * 119.99784 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00307 * 179.97438 * 4 3 2 7 7 C 1.46502 * 120.00092 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.46995 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.47066 * 180.02562 * 8 7 6 10 10 Si 1.86298 * 109.47082 * 180.02562 * 9 8 7 11 11 C 1.86290 * 109.47324 * 60.00024 * 10 9 8 12 12 C 1.86302 * 109.47078 * 179.97438 * 10 9 8 13 13 C 1.86303 * 109.47123 * 299.99443 * 10 9 8 14 14 C 1.47020 * 105.61474 * 180.02562 * 3 2 1 15 15 C 1.34184 * 105.95357 * 359.97438 * 14 3 2 16 16 C 1.50700 * 125.43720 * 179.97438 * 15 14 3 17 17 O 1.42904 * 109.47044 * 300.00136 * 16 15 14 18 18 Si 1.86295 * 109.46976 * 180.02562 * 16 15 14 19 19 H 1.48498 * 109.47228 * 60.00226 * 18 16 15 20 20 H 1.48504 * 109.46859 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47042 * 299.99546 * 18 16 15 22 22 O 1.33658 * 125.79718 * 180.02562 * 2 1 3 23 23 H 1.08996 * 109.47763 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47221 * 299.95358 * 1 2 3 25 25 H 1.09000 * 109.47096 * 59.95447 * 1 2 3 26 26 H 0.97006 * 119.99926 * 0.02562 * 6 4 3 27 27 H 1.08994 * 109.47211 * 300.00454 * 7 6 4 28 28 H 1.09002 * 109.46934 * 60.00179 * 7 6 4 29 29 H 1.09002 * 109.47318 * 299.99968 * 8 7 6 30 30 H 1.09002 * 109.47170 * 60.00279 * 8 7 6 31 31 H 1.09002 * 109.46766 * 299.99988 * 9 8 7 32 32 H 1.09002 * 109.47159 * 59.99954 * 9 8 7 33 33 H 1.08996 * 109.47782 * 59.99809 * 11 10 9 34 34 H 1.09002 * 109.47109 * 180.02562 * 11 10 9 35 35 H 1.09009 * 109.47136 * 299.99597 * 11 10 9 36 36 H 1.09002 * 109.47138 * 59.99796 * 12 10 9 37 37 H 1.08994 * 109.47452 * 179.97438 * 12 10 9 38 38 H 1.09002 * 109.46790 * 299.99828 * 12 10 9 39 39 H 1.09005 * 109.46718 * 60.00178 * 13 10 9 40 40 H 1.09002 * 109.46847 * 179.97438 * 13 10 9 41 41 H 1.08993 * 109.47080 * 300.00375 * 13 10 9 42 42 H 1.07999 * 127.02375 * 180.26023 * 14 3 2 43 43 H 1.09006 * 109.47066 * 59.99783 * 16 15 14 44 44 H 0.96697 * 114.00267 * 299.99962 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1063 0.0000 4 6 1.8741 2.5157 0.0011 5 8 0.6891 2.7892 0.0016 6 7 2.7931 3.5014 0.0014 7 6 2.3647 4.9024 0.0019 8 6 3.5950 5.8119 0.0016 9 6 3.1476 7.2751 0.0028 10 14 4.6457 8.3825 0.0016 11 6 5.6654 8.0462 -1.5207 12 6 4.1009 10.1641 0.0022 13 6 5.6687 8.0449 1.5216 14 6 3.6849 0.5990 -0.0006 15 6 3.5858 -0.7392 -0.0004 16 6 4.7458 -1.7012 -0.0014 17 8 5.5414 -1.4869 -1.1690 18 14 4.1024 -3.4496 -0.0013 19 1 3.2738 -3.6722 -1.2133 20 1 5.2455 -4.3976 -0.0029 21 1 3.2755 -3.6727 1.2118 22 8 2.2888 -1.0841 -0.0005 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5131 0.8904 25 1 -0.3633 0.5145 -0.8896 26 1 3.7383 3.2833 0.0006 27 1 1.7671 5.0999 -0.8879 28 1 1.7671 5.0992 0.8920 29 1 4.1930 5.6146 0.8913 30 1 4.1923 5.6150 -0.8887 31 1 2.5494 7.4727 -0.8867 32 1 2.5506 7.4717 0.8933 33 1 5.0670 8.2438 -2.4100 34 1 6.5422 8.6939 -1.5211 35 1 5.9843 7.0038 -1.5215 36 1 3.5040 10.3612 0.8927 37 1 4.9773 10.8121 0.0020 38 1 3.5026 10.3613 -0.8873 39 1 5.9875 7.0025 1.5208 40 1 6.5455 8.6926 1.5206 41 1 5.0720 8.2417 2.4122 42 1 4.5928 1.1838 0.0031 43 1 5.3544 -1.5375 0.8880 44 1 5.0634 -1.6154 -1.9997 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704008_13308374.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:28 Heat of formation + Delta-G solvation = -113.067481 kcal Electronic energy + Delta-G solvation = -21919.545096 eV Core-core repulsion = 18575.550677 eV Total energy + Delta-G solvation = -3343.994419 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.79340 -40.52608 -37.99971 -36.78924 -34.35722 -33.44562 -32.94762 -29.56890 -29.32303 -28.29086 -28.25751 -27.24386 -25.51911 -23.97661 -22.54367 -22.03804 -20.59008 -18.91660 -17.97630 -17.75290 -17.00303 -16.76620 -16.69265 -15.91794 -15.85048 -15.32553 -15.04088 -14.59681 -14.24249 -14.20362 -14.04721 -13.99870 -13.92535 -13.86642 -13.75704 -13.41474 -13.28252 -13.01743 -13.01441 -12.95249 -12.88656 -12.78269 -12.48222 -12.24623 -12.07588 -11.69874 -11.25734 -10.95288 -10.68226 -10.63671 -10.59389 -10.39842 -10.15258 -9.58247 0.20065 0.82365 1.07588 1.35236 1.46069 1.71015 1.91122 1.95229 2.04265 2.08980 2.23671 2.25526 2.78573 3.22285 3.48509 3.71614 3.78178 4.09878 4.13217 4.17561 4.37355 4.41503 4.49862 4.55179 4.63670 4.71081 4.73453 4.80204 4.84238 4.84811 4.89189 4.90613 4.91676 4.91695 5.08218 5.09979 5.21224 5.28175 5.37566 5.53545 5.63061 5.70036 5.71658 5.87316 6.49426 6.55940 7.15517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.079 3.921 3 C -0.268 4.268 4 C 0.583 3.417 5 O -0.579 6.579 6 N -0.713 5.713 7 C 0.119 3.881 8 C -0.118 4.118 9 C -0.422 4.422 10 Si 1.089 2.911 11 C -0.466 4.466 12 C -0.473 4.473 13 C -0.466 4.466 14 C -0.143 4.143 15 C -0.064 4.064 16 C -0.029 4.029 17 O -0.536 6.536 18 Si 0.986 3.014 19 H -0.265 1.265 20 H -0.253 1.253 21 H -0.266 1.266 22 O -0.180 6.180 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.414 0.586 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.183 0.817 43 H 0.157 0.843 44 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.946 -0.038 -0.104 3.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.026 3.974 3 C -0.272 4.272 4 C 0.372 3.628 5 O -0.461 6.461 6 N -0.365 5.365 7 C -0.004 4.004 8 C -0.156 4.156 9 C -0.506 4.506 10 Si 1.280 2.720 11 C -0.573 4.573 12 C -0.579 4.579 13 C -0.572 4.572 14 C -0.162 4.162 15 C -0.112 4.112 16 C -0.140 4.140 17 O -0.344 6.344 18 Si 0.809 3.191 19 H -0.189 1.189 20 H -0.177 1.177 21 H -0.191 1.191 22 O -0.078 6.078 23 H 0.114 0.886 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.251 0.749 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.200 0.800 43 H 0.174 0.826 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.177 -0.842 0.328 3.303 hybrid contribution -0.113 0.603 -0.378 0.721 sum 3.064 -0.238 -0.050 3.074 Atomic orbital electron populations 1.20559 0.82739 1.04887 1.05007 1.23189 0.94765 0.83086 0.96366 1.21256 0.94496 0.93378 1.18071 1.17428 0.85271 0.84556 0.75519 1.90772 1.18133 1.84760 1.52407 1.45785 1.10159 1.06055 1.74458 1.21562 0.98439 0.79068 1.01370 1.21459 0.96199 0.93856 1.04069 1.26305 1.15899 1.03255 1.05166 0.77976 0.64558 0.64217 0.65255 1.26353 1.09538 1.05174 1.16187 1.26416 1.05768 1.21499 1.04190 1.26351 1.09566 1.05182 1.16140 1.22818 0.96309 0.93507 1.03536 1.23094 0.82715 0.96406 1.08999 1.24379 0.90041 1.06028 0.93571 1.86547 1.38630 1.93222 1.15970 0.85101 0.78808 0.74284 0.80905 1.18863 1.17685 1.19082 1.83683 1.17206 1.35231 1.71667 0.88572 0.88785 0.88737 0.74915 0.92655 0.92639 0.89750 0.89759 0.90408 0.90397 0.91551 0.91667 0.90819 0.91535 0.91600 0.91532 0.90810 0.91666 0.91545 0.79955 0.82614 0.75686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.15 9.14 71.24 0.65 0.50 16 2 C 0.08 0.40 7.37 25.26 0.19 0.59 16 3 C -0.27 -1.36 6.31 -18.99 -0.12 -1.48 16 4 C 0.58 4.47 7.81 86.65 0.68 5.15 16 5 O -0.58 -8.39 15.66 -4.09 -0.06 -8.45 16 6 N -0.71 -0.85 5.55 -466.42 -2.59 -3.44 16 7 C 0.12 0.10 5.67 86.38 0.49 0.59 16 8 C -0.12 0.63 4.70 30.60 0.14 0.78 16 9 C -0.42 2.31 4.45 71.98 0.32 2.63 16 10 Si 1.09 -7.92 12.19 68.60 0.84 -7.09 16 11 C -0.47 2.29 8.65 113.37 0.98 3.27 16 12 C -0.47 1.53 8.65 113.37 0.98 2.51 16 13 C -0.47 2.31 8.65 113.37 0.98 3.29 16 14 C -0.14 -0.01 10.46 23.65 0.25 0.24 16 15 C -0.06 -0.02 6.20 24.76 0.15 0.13 16 16 C -0.03 0.12 2.98 71.24 0.21 0.33 16 17 O -0.54 2.04 12.86 -148.98 -1.92 0.12 16 18 Si 0.99 -1.94 27.37 68.60 1.88 -0.07 16 19 H -0.26 -0.12 7.11 99.48 0.71 0.59 16 20 H -0.25 0.17 7.11 99.48 0.71 0.88 16 21 H -0.27 -0.33 7.11 99.48 0.71 0.38 16 22 O -0.18 -0.70 8.89 4.48 0.04 -0.66 16 23 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 24 H 0.09 0.27 8.08 -2.39 -0.02 0.25 16 25 H 0.09 0.26 8.08 -2.39 -0.02 0.24 16 26 H 0.41 -1.94 7.64 -92.70 -0.71 -2.65 16 27 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.06 0.19 8.14 -2.39 -0.02 0.18 16 29 H 0.08 -0.64 7.79 -2.39 -0.02 -0.66 16 30 H 0.08 -0.64 7.79 -2.39 -0.02 -0.66 16 31 H 0.08 -0.38 7.96 -2.39 -0.02 -0.40 16 32 H 0.08 -0.38 7.96 -2.39 -0.02 -0.40 16 33 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 34 H 0.06 -0.26 7.96 -2.39 -0.02 -0.28 16 35 H 0.07 -0.42 7.79 -2.38 -0.02 -0.44 16 36 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 37 H 0.06 -0.17 7.96 -2.39 -0.02 -0.19 16 38 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 39 H 0.07 -0.43 7.79 -2.38 -0.02 -0.45 16 40 H 0.06 -0.26 7.96 -2.39 -0.02 -0.28 16 41 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 42 H 0.18 -1.02 7.74 -2.91 -0.02 -1.04 16 43 H 0.16 -1.23 7.96 -2.38 -0.02 -1.25 16 44 H 0.39 -3.65 8.70 -74.06 -0.64 -4.29 16 Total: 0.00 -17.03 370.37 4.47 -12.56 By element: Atomic # 1 Polarization: -11.88 SS G_CDS: 0.38 Total: -11.50 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 5.90 Total: 18.52 kcal Atomic # 7 Polarization: -0.85 SS G_CDS: -2.59 Total: -3.44 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -1.94 Total: -8.98 kcal Atomic # 14 Polarization: -9.87 SS G_CDS: 2.71 Total: -7.15 kcal Total: -17.03 4.47 -12.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_13308374.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.508 kcal (2) G-P(sol) polarization free energy of solvation -17.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds