Wall clock time and date at job start Tue Mar 9 2021 13:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86299 * 109.47569 * 2 1 4 4 C 1.86305 * 109.46932 * 239.99919 * 2 1 3 5 5 C 1.86301 * 109.46881 * 120.00561 * 2 1 3 6 6 C 1.52999 * 109.47545 * 59.99667 * 5 2 1 7 7 C 1.53001 * 109.46911 * 180.02562 * 6 5 2 8 8 N 1.46506 * 109.46715 * 180.02562 * 7 6 5 9 9 C 1.34771 * 119.99917 * 179.97438 * 8 7 6 10 10 O 1.21660 * 119.99864 * 359.97438 * 9 8 7 11 11 C 1.47046 * 120.00291 * 180.02562 * 9 8 7 12 12 C 1.36220 * 123.49611 * 179.97438 * 11 9 8 13 13 Cl 1.73603 * 124.60287 * 0.02813 * 12 11 9 14 14 S 1.70444 * 110.79318 * 180.02562 * 12 11 9 15 15 C 1.75495 * 92.46407 * 359.97438 * 14 12 11 16 16 C 1.50701 * 124.68648 * 180.02562 * 15 14 12 17 17 O 1.42903 * 109.46878 * 245.02345 * 16 15 14 18 18 Si 1.86300 * 109.46948 * 5.02563 * 16 15 14 19 19 H 1.48503 * 109.46942 * 299.99736 * 18 16 15 20 20 H 1.48503 * 109.47262 * 60.00072 * 18 16 15 21 21 H 1.48500 * 109.46912 * 180.02562 * 18 16 15 22 22 C 1.32698 * 110.63018 * 0.26650 * 15 14 12 23 23 H 1.09004 * 109.47015 * 300.00438 * 1 2 3 24 24 H 1.09005 * 109.47058 * 59.99940 * 1 2 3 25 25 H 1.08999 * 109.47674 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47308 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.46609 * 300.00146 * 3 2 1 28 28 H 1.09003 * 109.46816 * 59.99932 * 3 2 1 29 29 H 1.08999 * 109.46957 * 300.00458 * 4 2 1 30 30 H 1.09005 * 109.47134 * 60.00187 * 4 2 1 31 31 H 1.09001 * 109.47147 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.46480 * 299.99328 * 5 2 1 33 33 H 1.09003 * 109.46897 * 180.02562 * 5 2 1 34 34 H 1.08990 * 109.47135 * 59.99834 * 6 5 2 35 35 H 1.09001 * 109.46958 * 300.00023 * 6 5 2 36 36 H 1.08994 * 109.47316 * 60.00207 * 7 6 5 37 37 H 1.09001 * 109.47065 * 299.99635 * 7 6 5 38 38 H 0.96999 * 119.99655 * 359.97438 * 8 7 6 39 39 H 1.09001 * 109.46927 * 125.02280 * 16 15 14 40 40 H 0.96700 * 113.99509 * 179.97438 * 17 16 15 41 41 H 1.07999 * 123.45322 * 179.70231 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5212 5 6 2.4839 -0.8784 1.5211 6 6 1.9739 -2.3209 1.5211 7 6 2.4833 -3.0419 2.7706 8 7 1.9954 -4.4233 2.7703 9 6 2.3211 -5.2533 3.7810 10 8 3.0206 -4.8554 4.6934 11 6 1.8319 -6.6400 3.7804 12 6 2.1174 -7.5383 4.7638 13 17 3.0917 -7.1959 6.1593 14 16 1.3881 -9.0440 4.4382 15 6 0.6772 -8.4618 2.9430 16 6 -0.1797 -9.2906 2.0212 17 8 0.4904 -9.4580 0.7702 18 14 -0.4852 -10.9596 2.7904 19 1 0.8122 -11.6474 3.0119 20 1 -1.1815 -10.7856 4.0905 21 1 -1.3291 -11.7765 1.8817 22 6 1.0028 -7.1925 2.7337 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.5740 1.7563 -0.0005 27 1 2.1207 2.2702 -0.8900 28 1 2.1208 2.2702 0.8900 29 1 2.1205 -1.9059 -1.5212 30 1 2.1206 -0.3644 -2.4112 31 1 3.5739 -0.8787 -1.5210 32 1 2.1206 -0.3645 2.4111 33 1 3.5739 -0.8780 1.5213 34 1 2.3371 -2.8346 0.6311 35 1 0.8838 -2.3208 1.5211 36 1 2.1197 -2.5280 3.6604 37 1 3.5734 -3.0420 2.7710 38 1 1.4380 -4.7406 2.0426 39 1 -1.1320 -8.7857 1.8586 40 1 -0.0043 -9.9831 0.1262 41 1 0.6794 -6.6295 1.8707 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9704008_13431040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:36 Heat of formation + Delta-G solvation = -97.100999 kcal Electronic energy + Delta-G solvation = -21646.293178 eV Core-core repulsion = 18222.799623 eV Total energy + Delta-G solvation = -3423.493554 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 335.069 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.87060 -38.85797 -37.90888 -37.07866 -36.63342 -33.48486 -31.79459 -29.59035 -28.45894 -28.45375 -27.66127 -26.84068 -24.76358 -22.52390 -21.93557 -20.52013 -19.21773 -18.66291 -17.93084 -16.83213 -16.75998 -16.57590 -15.87943 -15.61789 -15.25224 -14.88753 -14.53792 -14.45039 -14.39458 -14.24254 -14.12620 -14.01518 -13.95031 -13.42661 -13.41259 -13.14377 -13.12898 -13.11728 -13.03183 -12.63380 -12.57383 -12.40041 -12.34531 -12.04113 -11.90407 -11.84906 -10.88563 -10.82558 -10.78962 -10.60252 -10.48527 -10.04908 -9.83635 -9.61564 -0.54897 -0.20114 0.44012 0.74271 0.91391 1.12106 1.27603 1.31033 1.73332 1.74710 1.83867 1.85533 2.30512 2.36548 2.61342 3.09458 3.50692 3.87624 3.91661 4.02235 4.09842 4.16532 4.24387 4.46100 4.65334 4.65837 4.69508 4.71518 4.72493 4.72985 4.74012 4.74412 4.77927 4.93599 5.02365 5.14436 5.32036 5.44272 5.51338 5.52104 5.52933 6.34502 6.53026 7.29103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.012 2.988 3 C -0.453 4.453 4 C -0.451 4.451 5 C -0.411 4.411 6 C -0.121 4.121 7 C 0.120 3.880 8 N -0.726 5.726 9 C 0.575 3.425 10 O -0.519 6.519 11 C -0.158 4.158 12 C -0.113 4.113 13 Cl 0.027 6.973 14 S 0.226 5.774 15 C -0.191 4.191 16 C -0.039 4.039 17 O -0.541 6.541 18 Si 0.879 3.121 19 H -0.226 1.226 20 H -0.229 1.229 21 H -0.224 1.224 22 C -0.068 4.068 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.400 0.600 39 H 0.091 0.909 40 H 0.385 0.615 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.797 -1.388 -4.753 6.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.208 2.792 3 C -0.560 4.560 4 C -0.558 4.558 5 C -0.497 4.497 6 C -0.159 4.159 7 C -0.003 4.003 8 N -0.378 5.378 9 C 0.359 3.641 10 O -0.396 6.396 11 C -0.177 4.177 12 C -0.260 4.260 13 Cl 0.056 6.944 14 S 0.491 5.509 15 C -0.308 4.308 16 C -0.152 4.152 17 O -0.347 6.347 18 Si 0.698 3.302 19 H -0.149 1.149 20 H -0.152 1.152 21 H -0.146 1.146 22 C -0.098 4.098 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.234 0.766 39 H 0.109 0.891 40 H 0.233 0.767 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.900 -2.899 -2.498 5.464 hybrid contribution -0.404 1.415 -1.415 2.041 sum -4.304 -1.485 -3.912 6.003 Atomic orbital electron populations 1.26167 1.20934 1.04326 1.04394 0.79169 0.66918 0.66727 0.66412 1.26146 1.06284 1.19149 1.04404 1.26169 1.06272 1.07990 1.15410 1.26140 1.06203 1.01263 1.16080 1.21423 1.01290 0.95744 0.97429 1.21523 0.99647 0.80176 0.98936 1.45875 1.54160 1.12647 1.25128 1.17378 0.80370 0.83958 0.82345 1.90880 1.36921 1.76505 1.35251 1.20234 1.05288 0.95843 0.96288 1.25366 1.03448 1.00640 0.96542 1.98438 1.66394 1.94469 1.35084 1.83388 1.43463 1.07513 1.16512 1.23533 1.08078 0.98350 1.00797 1.23941 0.95803 1.07558 0.87869 1.86517 1.47867 1.76767 1.23590 0.86448 0.83906 0.77138 0.82721 1.14897 1.15183 1.14586 1.20977 0.96753 0.94057 0.97979 0.91295 0.91341 0.91317 0.91273 0.91302 0.91278 0.91306 0.91345 0.91284 0.90255 0.90242 0.91024 0.91058 0.91273 0.91283 0.76558 0.89128 0.76657 0.82412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.01 8.65 101.05 0.87 1.88 16 2 Si 1.01 -3.41 12.19 -169.99 -2.07 -5.48 16 3 C -0.45 0.75 8.65 101.05 0.87 1.63 16 4 C -0.45 0.96 8.65 101.05 0.87 1.84 16 5 C -0.41 1.04 4.45 37.16 0.17 1.20 16 6 C -0.12 0.29 4.70 -26.73 -0.13 0.16 16 7 C 0.12 0.02 5.67 -4.04 -0.02 0.00 16 8 N -0.73 -0.32 5.53 -61.50 -0.34 -0.66 16 9 C 0.57 2.13 7.79 -12.69 -0.10 2.03 16 10 O -0.52 -3.72 14.91 5.22 0.08 -3.65 16 11 C -0.16 -0.40 5.98 -104.58 -0.63 -1.02 16 12 C -0.11 -0.35 6.87 30.01 0.21 -0.14 16 13 Cl 0.03 0.12 27.20 -51.86 -1.41 -1.30 16 14 S 0.23 0.22 20.19 -107.50 -2.17 -1.96 16 15 C -0.19 0.01 5.69 -36.19 -0.21 -0.20 16 16 C -0.04 0.09 2.93 36.01 0.11 0.20 16 17 O -0.54 1.07 12.86 -35.23 -0.45 0.61 16 18 Si 0.88 -1.76 26.20 -169.99 -4.45 -6.21 16 19 H -0.23 0.12 7.11 56.52 0.40 0.52 16 20 H -0.23 0.32 7.11 56.52 0.40 0.72 16 21 H -0.22 0.55 7.11 56.52 0.40 0.95 16 22 C -0.07 0.00 9.75 -39.00 -0.38 -0.38 16 23 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 24 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 25 H 0.07 -0.17 7.79 -51.93 -0.40 -0.57 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 29 H 0.07 -0.16 7.79 -51.93 -0.40 -0.56 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 31 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 32 H 0.08 -0.18 7.96 -51.93 -0.41 -0.60 16 33 H 0.08 -0.18 7.96 -51.93 -0.41 -0.59 16 34 H 0.07 -0.22 7.79 -51.93 -0.40 -0.63 16 35 H 0.07 -0.23 7.79 -51.93 -0.40 -0.64 16 36 H 0.07 0.09 8.14 -51.93 -0.42 -0.34 16 37 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 38 H 0.40 -0.96 7.02 -40.82 -0.29 -1.24 16 39 H 0.09 -0.42 7.96 -51.93 -0.41 -0.83 16 40 H 0.39 -2.46 8.74 45.56 0.40 -2.06 16 41 H 0.16 -0.43 7.10 -52.49 -0.37 -0.81 16 LS Contribution 370.13 15.07 5.58 5.58 Total: 0.00 -7.32 370.13 -9.26 -16.58 By element: Atomic # 1 Polarization: -5.06 SS G_CDS: -5.65 Total: -10.71 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 1.64 Total: 7.20 kcal Atomic # 7 Polarization: -0.32 SS G_CDS: -0.34 Total: -0.66 kcal Atomic # 8 Polarization: -2.66 SS G_CDS: -0.38 Total: -3.03 kcal Atomic # 14 Polarization: -5.17 SS G_CDS: -6.53 Total: -11.69 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -2.17 Total: -1.96 kcal Atomic # 17 Polarization: 0.12 SS G_CDS: -1.41 Total: -1.30 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -7.32 -9.26 -16.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_13431040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.521 kcal (2) G-P(sol) polarization free energy of solvation -7.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds