Wall clock time and date at job start Tue Mar 9 2021 13:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86299 * 109.47569 * 2 1 4 4 C 1.86305 * 109.46932 * 239.99919 * 2 1 3 5 5 C 1.86301 * 109.46881 * 120.00561 * 2 1 3 6 6 C 1.52999 * 109.47545 * 59.99667 * 5 2 1 7 7 C 1.53001 * 109.46911 * 180.02562 * 6 5 2 8 8 N 1.46506 * 109.46715 * 180.02562 * 7 6 5 9 9 C 1.34771 * 119.99917 * 179.97438 * 8 7 6 10 10 O 1.21660 * 119.99864 * 359.97438 * 9 8 7 11 11 C 1.47046 * 120.00291 * 180.02562 * 9 8 7 12 12 C 1.36220 * 123.49611 * 179.97438 * 11 9 8 13 13 Cl 1.73603 * 124.60287 * 0.02813 * 12 11 9 14 14 S 1.70444 * 110.79318 * 180.02562 * 12 11 9 15 15 C 1.75495 * 92.46407 * 359.97438 * 14 12 11 16 16 C 1.50701 * 124.68648 * 180.02562 * 15 14 12 17 17 O 1.42903 * 109.46878 * 245.02345 * 16 15 14 18 18 Si 1.86300 * 109.46948 * 5.02563 * 16 15 14 19 19 H 1.48503 * 109.46942 * 299.99736 * 18 16 15 20 20 H 1.48503 * 109.47262 * 60.00072 * 18 16 15 21 21 H 1.48500 * 109.46912 * 180.02562 * 18 16 15 22 22 C 1.32698 * 110.63018 * 0.26650 * 15 14 12 23 23 H 1.09004 * 109.47015 * 300.00438 * 1 2 3 24 24 H 1.09005 * 109.47058 * 59.99940 * 1 2 3 25 25 H 1.08999 * 109.47674 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47308 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.46609 * 300.00146 * 3 2 1 28 28 H 1.09003 * 109.46816 * 59.99932 * 3 2 1 29 29 H 1.08999 * 109.46957 * 300.00458 * 4 2 1 30 30 H 1.09005 * 109.47134 * 60.00187 * 4 2 1 31 31 H 1.09001 * 109.47147 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.46480 * 299.99328 * 5 2 1 33 33 H 1.09003 * 109.46897 * 180.02562 * 5 2 1 34 34 H 1.08990 * 109.47135 * 59.99834 * 6 5 2 35 35 H 1.09001 * 109.46958 * 300.00023 * 6 5 2 36 36 H 1.08994 * 109.47316 * 60.00207 * 7 6 5 37 37 H 1.09001 * 109.47065 * 299.99635 * 7 6 5 38 38 H 0.96999 * 119.99655 * 359.97438 * 8 7 6 39 39 H 1.09001 * 109.46927 * 125.02280 * 16 15 14 40 40 H 0.96700 * 113.99509 * 179.97438 * 17 16 15 41 41 H 1.07999 * 123.45322 * 179.70231 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5212 5 6 2.4839 -0.8784 1.5211 6 6 1.9739 -2.3209 1.5211 7 6 2.4833 -3.0419 2.7706 8 7 1.9954 -4.4233 2.7703 9 6 2.3211 -5.2533 3.7810 10 8 3.0206 -4.8554 4.6934 11 6 1.8319 -6.6400 3.7804 12 6 2.1174 -7.5383 4.7638 13 17 3.0917 -7.1959 6.1593 14 16 1.3881 -9.0440 4.4382 15 6 0.6772 -8.4618 2.9430 16 6 -0.1797 -9.2906 2.0212 17 8 0.4904 -9.4580 0.7702 18 14 -0.4852 -10.9596 2.7904 19 1 0.8122 -11.6474 3.0119 20 1 -1.1815 -10.7856 4.0905 21 1 -1.3291 -11.7765 1.8817 22 6 1.0028 -7.1925 2.7337 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.5740 1.7563 -0.0005 27 1 2.1207 2.2702 -0.8900 28 1 2.1208 2.2702 0.8900 29 1 2.1205 -1.9059 -1.5212 30 1 2.1206 -0.3644 -2.4112 31 1 3.5739 -0.8787 -1.5210 32 1 2.1206 -0.3645 2.4111 33 1 3.5739 -0.8780 1.5213 34 1 2.3371 -2.8346 0.6311 35 1 0.8838 -2.3208 1.5211 36 1 2.1197 -2.5280 3.6604 37 1 3.5734 -3.0420 2.7710 38 1 1.4380 -4.7406 2.0426 39 1 -1.1320 -8.7857 1.8586 40 1 -0.0043 -9.9831 0.1262 41 1 0.6794 -6.6295 1.8707 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704008_13431040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:35 Heat of formation + Delta-G solvation = -92.837762 kcal Electronic energy + Delta-G solvation = -21646.108310 eV Core-core repulsion = 18222.799623 eV Total energy + Delta-G solvation = -3423.308687 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 335.069 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.05645 -38.82947 -38.02417 -37.05396 -36.73074 -33.47717 -31.78711 -29.41352 -28.28344 -28.23633 -27.69042 -26.76008 -24.78577 -22.47748 -21.92311 -20.61514 -19.26526 -18.45688 -17.99562 -16.98560 -16.80128 -16.48400 -15.81580 -15.65465 -15.27515 -14.77911 -14.59664 -14.46777 -14.34896 -14.12834 -14.02250 -13.91998 -13.74652 -13.38385 -13.26741 -13.02177 -12.99561 -12.94785 -12.93582 -12.59568 -12.50565 -12.41589 -12.25040 -12.07802 -11.95642 -11.67186 -11.02349 -10.66550 -10.61741 -10.40970 -10.37187 -10.20591 -9.88752 -9.69094 -0.67104 -0.27247 0.42041 0.71652 0.97846 1.09121 1.41659 1.46082 1.90476 1.96327 2.05143 2.11099 2.15982 2.26024 2.80107 3.24422 3.66233 3.84803 3.93946 4.15888 4.18873 4.37416 4.41449 4.50086 4.72823 4.77077 4.81715 4.84940 4.85646 4.91238 4.92471 4.93737 4.94012 4.96508 5.11228 5.30624 5.36585 5.55208 5.64025 5.71937 5.73859 6.46930 6.82106 7.14150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.089 2.911 3 C -0.475 4.475 4 C -0.466 4.466 5 C -0.423 4.423 6 C -0.118 4.118 7 C 0.119 3.881 8 N -0.709 5.709 9 C 0.567 3.433 10 O -0.563 6.563 11 C -0.164 4.164 12 C -0.137 4.137 13 Cl 0.004 6.996 14 S 0.226 5.774 15 C -0.188 4.188 16 C -0.029 4.029 17 O -0.556 6.556 18 Si 0.889 3.111 19 H -0.255 1.255 20 H -0.241 1.241 21 H -0.211 1.211 22 C -0.065 4.065 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.416 0.584 39 H 0.125 0.875 40 H 0.405 0.595 41 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.443 -1.684 -6.822 9.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.280 2.720 3 C -0.580 4.580 4 C -0.572 4.572 5 C -0.507 4.507 6 C -0.155 4.155 7 C -0.004 4.004 8 N -0.361 5.361 9 C 0.353 3.647 10 O -0.443 6.443 11 C -0.183 4.183 12 C -0.283 4.283 13 Cl 0.033 6.967 14 S 0.491 5.509 15 C -0.306 4.306 16 C -0.143 4.143 17 O -0.366 6.366 18 Si 0.710 3.290 19 H -0.179 1.179 20 H -0.164 1.164 21 H -0.132 1.132 22 C -0.094 4.094 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.254 0.746 39 H 0.143 0.857 40 H 0.257 0.743 41 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -5.582 -3.204 -4.619 7.922 hybrid contribution 0.100 1.477 -0.811 1.688 sum -5.482 -1.727 -5.430 7.907 Atomic orbital electron populations 1.26329 1.21940 1.04728 1.04112 0.77979 0.65224 0.64227 0.64580 1.26438 1.06238 1.21230 1.04104 1.26347 1.06156 1.08661 1.16046 1.26318 1.06166 1.01432 1.16818 1.21464 1.02278 0.95400 0.96394 1.21570 0.98838 0.80112 0.99926 1.45793 1.53361 1.12352 1.24619 1.17685 0.79985 0.84698 0.82377 1.90854 1.39053 1.77381 1.37060 1.20410 1.05691 0.95237 0.97004 1.25585 1.04345 1.01973 0.96444 1.98418 1.67205 1.94735 1.36362 1.83394 1.43203 1.06573 1.17696 1.23890 1.07683 0.98635 1.00354 1.23886 0.96372 1.06581 0.87441 1.86469 1.48922 1.77356 1.23835 0.86320 0.82410 0.77750 0.82488 1.17884 1.16419 1.13227 1.21201 0.95987 0.94162 0.98009 0.91580 0.91658 0.90578 0.91650 0.91600 0.91595 0.90639 0.91658 0.91668 0.90488 0.90593 0.89591 0.89413 0.92626 0.92826 0.74638 0.85727 0.74347 0.79294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.63 8.65 113.37 0.98 3.61 16 2 Si 1.09 -8.24 12.19 68.60 0.84 -7.41 16 3 C -0.47 1.50 8.65 113.37 0.98 2.48 16 4 C -0.47 2.48 8.65 113.37 0.98 3.46 16 5 C -0.42 2.35 4.45 71.98 0.32 2.67 16 6 C -0.12 0.70 4.70 30.59 0.14 0.85 16 7 C 0.12 0.08 5.67 86.38 0.49 0.57 16 8 N -0.71 -0.38 5.53 -466.72 -2.58 -2.96 16 9 C 0.57 4.66 7.79 86.55 0.67 5.34 16 10 O -0.56 -9.27 14.91 -4.22 -0.06 -9.34 16 11 C -0.16 -0.87 5.98 -19.84 -0.12 -0.99 16 12 C -0.14 -1.01 6.87 67.35 0.46 -0.55 16 13 Cl 0.00 0.04 27.20 -2.72 -0.07 -0.03 16 14 S 0.23 0.56 20.19 -56.49 -1.14 -0.58 16 15 C -0.19 0.25 5.69 24.51 0.14 0.39 16 16 C -0.03 0.20 2.93 71.24 0.21 0.41 16 17 O -0.56 3.60 12.86 -148.98 -1.92 1.69 16 18 Si 0.89 -4.28 26.20 68.60 1.80 -2.48 16 19 H -0.25 0.06 7.11 99.48 0.71 0.77 16 20 H -0.24 0.71 7.11 99.48 0.71 1.42 16 21 H -0.21 1.41 7.11 99.48 0.71 2.12 16 22 C -0.07 0.10 9.75 22.70 0.22 0.33 16 23 H 0.06 -0.31 7.96 -2.39 -0.02 -0.33 16 24 H 0.06 -0.30 7.96 -2.38 -0.02 -0.32 16 25 H 0.08 -0.53 7.79 -2.39 -0.02 -0.55 16 26 H 0.06 -0.16 7.96 -2.39 -0.02 -0.18 16 27 H 0.06 -0.17 7.96 -2.39 -0.02 -0.19 16 28 H 0.06 -0.17 7.96 -2.39 -0.02 -0.19 16 29 H 0.07 -0.49 7.79 -2.39 -0.02 -0.51 16 30 H 0.06 -0.29 7.96 -2.38 -0.02 -0.30 16 31 H 0.06 -0.28 7.96 -2.39 -0.02 -0.30 16 32 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 33 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 34 H 0.09 -0.72 7.79 -2.39 -0.02 -0.74 16 35 H 0.09 -0.78 7.79 -2.39 -0.02 -0.79 16 36 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.42 -2.74 7.02 -92.71 -0.65 -3.39 16 39 H 0.13 -1.62 7.96 -2.39 -0.02 -1.64 16 40 H 0.40 -6.28 8.74 -74.06 -0.65 -6.93 16 41 H 0.19 -1.64 7.10 -2.91 -0.02 -1.66 16 Total: 0.00 -19.48 370.13 2.84 -16.64 By element: Atomic # 1 Polarization: -14.61 SS G_CDS: 0.50 Total: -14.11 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: 5.48 Total: 18.58 kcal Atomic # 7 Polarization: -0.38 SS G_CDS: -2.58 Total: -2.96 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -1.98 Total: -7.65 kcal Atomic # 14 Polarization: -12.52 SS G_CDS: 2.63 Total: -9.89 kcal Atomic # 16 Polarization: 0.56 SS G_CDS: -1.14 Total: -0.58 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -0.07 Total: -0.03 kcal Total: -19.48 2.84 -16.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_13431040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.195 kcal (2) G-P(sol) polarization free energy of solvation -19.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds