Wall clock time and date at job start Tue Mar 9 2021 13:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86301 * 109.47106 * 2 1 4 4 C 1.86295 * 109.47206 * 239.99688 * 2 1 3 5 5 C 1.86300 * 109.46878 * 119.99701 * 2 1 3 6 6 C 1.52997 * 109.47013 * 60.00319 * 5 2 1 7 7 C 1.53006 * 109.47127 * 180.02562 * 6 5 2 8 8 N 1.46504 * 109.46883 * 180.02562 * 7 6 5 9 9 C 1.34775 * 119.99531 * 179.97438 * 8 7 6 10 10 O 1.21612 * 120.00327 * 0.02562 * 9 8 7 11 11 C 1.47378 * 119.99868 * 179.97438 * 9 8 7 12 12 C 1.36418 * 127.19230 * 359.69099 * 11 9 8 13 13 O 1.33649 * 108.39371 * 179.88903 * 12 11 9 14 14 C 1.34215 * 110.91441 * 0.38695 * 13 12 11 15 15 C 1.50696 * 125.44088 * 179.75847 * 14 13 12 16 16 O 1.42897 * 109.47253 * 245.00163 * 15 14 13 17 17 Si 1.86311 * 109.47035 * 5.00303 * 15 14 13 18 18 H 1.48499 * 109.46928 * 59.99850 * 17 15 14 19 19 H 1.48496 * 109.46669 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46722 * 299.99678 * 17 15 14 21 21 C 1.34174 * 109.12030 * 359.76270 * 14 13 12 22 22 H 1.09001 * 109.47467 * 300.00590 * 1 2 3 23 23 H 1.09002 * 109.46890 * 60.00120 * 1 2 3 24 24 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46900 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47148 * 299.99722 * 3 2 1 27 27 H 1.09004 * 109.47198 * 59.99853 * 3 2 1 28 28 H 1.09000 * 109.47314 * 300.00273 * 4 2 1 29 29 H 1.09002 * 109.47039 * 60.00283 * 4 2 1 30 30 H 1.08998 * 109.47003 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.47484 * 300.00371 * 5 2 1 32 32 H 1.09001 * 109.47083 * 179.97438 * 5 2 1 33 33 H 1.09001 * 109.47502 * 60.00186 * 6 5 2 34 34 H 1.09001 * 109.47289 * 299.99983 * 6 5 2 35 35 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 36 36 H 1.08993 * 109.46955 * 60.00011 * 7 6 5 37 37 H 0.96992 * 119.99966 * 359.97438 * 8 7 6 38 38 H 1.07994 * 125.79858 * 0.02562 * 12 11 9 39 39 H 1.09003 * 109.47215 * 124.99735 * 15 14 13 40 40 H 0.96703 * 113.99943 * 60.00465 * 16 15 14 41 41 H 1.08006 * 127.02268 * 180.02562 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5210 5 6 2.4839 -0.8782 1.5212 6 6 1.9739 -2.3206 1.5212 7 6 2.4834 -3.0417 2.7709 8 7 1.9955 -4.4231 2.7705 9 6 2.3212 -5.2530 3.7813 10 8 3.0195 -4.8549 4.6939 11 6 1.8300 -6.6425 3.7813 12 6 1.0381 -7.2372 2.8431 13 8 0.8233 -8.5032 3.2137 14 6 1.4394 -8.7736 4.3750 15 6 1.4097 -10.0986 5.0921 16 8 0.7325 -9.9490 6.3415 17 14 0.5121 -11.3514 4.0452 18 1 1.2159 -11.5068 2.7469 19 1 0.4834 -12.6572 4.7517 20 1 -0.8779 -10.8886 3.8026 21 6 2.0859 -7.6756 4.7956 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.5740 1.7564 0.0005 26 1 2.1207 2.2703 -0.8900 27 1 2.1206 2.2703 0.8900 28 1 2.1207 -1.9059 -1.5210 29 1 2.1207 -0.3645 -2.4111 30 1 3.5740 -0.8779 -1.5212 31 1 2.1206 -0.3644 2.4112 32 1 3.5739 -0.8786 1.5210 33 1 2.3373 -2.8346 0.6313 34 1 0.8839 -2.3207 1.5211 35 1 3.5734 -3.0417 2.7713 36 1 2.1196 -2.5277 3.6605 37 1 1.4382 -4.7404 2.0428 38 1 0.6523 -6.7657 1.9514 39 1 2.4300 -10.4383 5.2702 40 1 -0.1830 -9.6486 6.2592 41 1 2.6745 -7.5721 5.6952 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9704008_13456056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:40 Heat of formation + Delta-G solvation = -110.987896 kcal Electronic energy + Delta-G solvation = -19810.101286 eV Core-core repulsion = 16621.734664 eV Total energy + Delta-G solvation = -3188.366622 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.72602 -40.37899 -38.05058 -36.74960 -34.18841 -33.38534 -31.73958 -29.61006 -28.49306 -28.48820 -27.46447 -26.47955 -24.29313 -22.61443 -22.23990 -20.74318 -19.36444 -17.96307 -17.56563 -17.25637 -16.87175 -16.74753 -16.25286 -15.83653 -15.30878 -15.00508 -14.68771 -14.29022 -14.24168 -14.11864 -13.99220 -13.98476 -13.67096 -13.52413 -13.41889 -13.19920 -13.15548 -13.14189 -12.91354 -12.66145 -12.22827 -12.08791 -11.91614 -11.09520 -10.88063 -10.86483 -10.86292 -10.67167 -10.56834 -10.10713 -9.80693 0.23222 0.89386 0.99232 1.37299 1.41988 1.69879 1.72779 1.79975 1.81859 1.86778 2.15260 2.38866 2.57236 3.19572 3.40081 3.59367 3.88834 3.96084 4.03285 4.18137 4.31954 4.41774 4.59084 4.60197 4.61517 4.65304 4.68001 4.69364 4.70976 4.71271 4.72622 4.78014 4.96021 5.08422 5.22973 5.26922 5.38898 5.45367 5.48419 5.49456 5.82431 6.34572 6.46148 7.23635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.013 2.987 3 C -0.453 4.453 4 C -0.451 4.451 5 C -0.412 4.412 6 C -0.121 4.121 7 C 0.119 3.881 8 N -0.730 5.730 9 C 0.586 3.414 10 O -0.531 6.531 11 C -0.236 4.236 12 C 0.030 3.970 13 O -0.171 6.171 14 C -0.061 4.061 15 C -0.041 4.041 16 O -0.529 6.529 17 Si 0.960 3.040 18 H -0.247 1.247 19 H -0.245 1.245 20 H -0.249 1.249 21 C -0.120 4.120 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.397 0.603 38 H 0.213 0.787 39 H 0.137 0.863 40 H 0.381 0.619 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.831 0.010 -4.591 5.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.209 2.791 3 C -0.560 4.560 4 C -0.559 4.559 5 C -0.497 4.497 6 C -0.159 4.159 7 C -0.004 4.004 8 N -0.382 5.382 9 C 0.373 3.627 10 O -0.408 6.408 11 C -0.241 4.241 12 C -0.040 4.040 13 O -0.067 6.067 14 C -0.109 4.109 15 C -0.151 4.151 16 O -0.334 6.334 17 Si 0.780 3.220 18 H -0.171 1.171 19 H -0.168 1.168 20 H -0.172 1.172 21 C -0.140 4.140 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.231 0.769 38 H 0.230 0.770 39 H 0.155 0.845 40 H 0.229 0.771 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.331 -0.719 -4.316 4.958 hybrid contribution -0.385 0.758 -0.311 0.905 sum -2.715 0.039 -4.627 5.365 Atomic orbital electron populations 1.26170 1.20944 1.04303 1.04432 0.79152 0.66888 0.66749 0.66334 1.26149 1.06292 1.19135 1.04432 1.26170 1.06280 1.07949 1.15453 1.26145 1.06227 1.01213 1.16154 1.21429 1.01293 0.95818 0.97334 1.21538 0.99684 0.80117 0.99022 1.45894 1.54349 1.12848 1.25121 1.17269 0.79834 0.83689 0.81916 1.90823 1.37592 1.76770 1.35639 1.21567 1.07293 0.96046 0.99200 1.24450 0.98241 0.81827 0.99525 1.83681 1.59463 1.28709 1.34885 1.22784 1.01114 0.99378 0.87639 1.24424 1.04865 0.95521 0.90320 1.86589 1.30052 1.89890 1.26861 0.85487 0.80179 0.78082 0.78239 1.17067 1.16840 1.17168 1.22551 1.01291 0.90086 1.00054 0.91273 0.91322 0.91354 0.91264 0.91281 0.91265 0.91350 0.91321 0.91275 0.90212 0.90214 0.91036 0.91046 0.91249 0.91242 0.76859 0.77010 0.84531 0.77101 0.81878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.14 8.65 101.05 0.87 2.02 16 2 Si 1.01 -3.78 12.19 -169.99 -2.07 -5.86 16 3 C -0.45 0.87 8.65 101.05 0.87 1.75 16 4 C -0.45 1.14 8.65 101.05 0.87 2.02 16 5 C -0.41 1.21 4.45 37.16 0.17 1.37 16 6 C -0.12 0.36 4.70 -26.73 -0.13 0.23 16 7 C 0.12 -0.04 5.67 -4.04 -0.02 -0.06 16 8 N -0.73 0.33 5.55 -61.39 -0.34 -0.01 16 9 C 0.59 1.84 7.81 -12.54 -0.10 1.74 16 10 O -0.53 -4.02 16.98 5.27 0.09 -3.93 16 11 C -0.24 -0.37 6.31 -103.27 -0.65 -1.02 16 12 C 0.03 -0.04 11.61 30.08 0.35 0.31 16 13 O -0.17 -0.01 8.90 7.66 0.07 0.05 16 14 C -0.06 -0.03 6.18 -35.74 -0.22 -0.25 16 15 C -0.04 0.04 2.97 36.00 0.11 0.15 16 16 O -0.53 0.18 12.88 -35.23 -0.45 -0.27 16 17 Si 0.96 -1.17 27.38 -169.99 -4.65 -5.82 16 18 H -0.25 0.04 7.11 56.52 0.40 0.44 16 19 H -0.25 0.06 7.11 56.52 0.40 0.46 16 20 H -0.25 0.13 7.11 56.52 0.40 0.53 16 21 C -0.12 -0.25 10.90 -37.45 -0.41 -0.66 16 22 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 23 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 24 H 0.07 -0.19 7.79 -51.93 -0.40 -0.60 16 25 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 26 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.19 7.79 -51.93 -0.40 -0.60 16 29 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 30 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 31 H 0.08 -0.21 7.96 -51.93 -0.41 -0.63 16 32 H 0.08 -0.21 7.96 -51.93 -0.41 -0.63 16 33 H 0.07 -0.28 7.79 -51.93 -0.40 -0.68 16 34 H 0.07 -0.28 7.79 -51.93 -0.40 -0.68 16 35 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 36 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.40 -1.56 7.44 -40.82 -0.30 -1.86 16 38 H 0.21 -1.29 7.47 -52.49 -0.39 -1.68 16 39 H 0.14 -0.32 7.96 -51.93 -0.41 -0.73 16 40 H 0.38 -1.36 8.70 45.56 0.40 -0.97 16 41 H 0.16 0.40 8.06 -52.48 -0.42 -0.03 16 LS Contribution 350.53 15.07 5.28 5.28 Total: 0.00 -8.68 350.53 -6.48 -15.16 By element: Atomic # 1 Polarization: -6.08 SS G_CDS: -6.12 Total: -12.19 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 1.72 Total: 7.59 kcal Atomic # 7 Polarization: 0.33 SS G_CDS: -0.34 Total: -0.01 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.30 Total: -4.15 kcal Atomic # 14 Polarization: -4.95 SS G_CDS: -6.73 Total: -11.68 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -8.68 -6.48 -15.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_13456056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.830 kcal (2) G-P(sol) polarization free energy of solvation -8.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds