Wall clock time and date at job start Tue Mar 9 2021 13:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86295 * 109.47207 * 2 1 4 4 C 1.86303 * 109.47020 * 240.00449 * 2 1 3 5 5 C 1.86298 * 109.46875 * 120.00326 * 2 1 3 6 6 C 1.53002 * 109.47335 * 60.00229 * 5 2 1 7 7 C 1.52994 * 109.47103 * 179.97438 * 6 5 2 8 8 N 1.46500 * 109.47229 * 179.97438 * 7 6 5 9 9 C 1.34770 * 120.00669 * 180.02562 * 8 7 6 10 10 O 1.21278 * 119.99650 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.00465 * 180.02562 * 9 8 7 12 12 C 1.53542 * 109.82270 * 81.79309 * 11 9 8 13 13 C 1.53042 * 108.56200 * 180.48993 * 12 11 9 14 14 C 1.50202 * 110.24994 * 310.23459 * 13 12 11 15 15 C 1.50707 * 118.54967 * 200.27871 * 14 13 12 16 16 O 1.42897 * 109.46897 * 70.21223 * 15 14 13 17 17 Si 1.86300 * 109.47051 * 190.21493 * 15 14 13 18 18 H 1.48504 * 109.47106 * 60.00103 * 17 15 14 19 19 H 1.48504 * 109.46849 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47349 * 299.99707 * 17 15 14 21 21 C 1.31115 * 122.90854 * 20.50484 * 14 13 12 22 22 N 1.38930 * 121.84506 * 359.08766 * 21 14 13 23 23 H 1.09005 * 109.47451 * 299.99956 * 1 2 3 24 24 H 1.08999 * 109.47179 * 59.99786 * 1 2 3 25 25 H 1.08998 * 109.47581 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47275 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47678 * 300.00458 * 3 2 1 28 28 H 1.09003 * 109.47086 * 60.00193 * 3 2 1 29 29 H 1.09011 * 109.46795 * 300.00097 * 4 2 1 30 30 H 1.08999 * 109.47336 * 59.99861 * 4 2 1 31 31 H 1.08996 * 109.47276 * 180.02562 * 4 2 1 32 32 H 1.08996 * 109.47374 * 299.99926 * 5 2 1 33 33 H 1.09008 * 109.46593 * 179.97438 * 5 2 1 34 34 H 1.08996 * 109.47137 * 59.99551 * 6 5 2 35 35 H 1.09006 * 109.46534 * 299.99752 * 6 5 2 36 36 H 1.08996 * 109.47268 * 59.99904 * 7 6 5 37 37 H 1.08996 * 109.47361 * 299.99432 * 7 6 5 38 38 H 0.97009 * 120.00073 * 359.97438 * 8 7 6 39 39 H 1.08993 * 109.86533 * 320.89477 * 11 9 8 40 40 H 1.08999 * 109.61814 * 300.21378 * 12 11 9 41 41 H 1.08995 * 109.62134 * 60.76333 * 12 11 9 42 42 H 1.08996 * 109.32573 * 70.68634 * 13 12 11 43 43 H 1.09003 * 109.32566 * 190.33796 * 13 12 11 44 44 H 1.09001 * 109.46980 * 310.21434 * 15 14 13 45 45 H 0.96701 * 114.00204 * 60.00951 * 16 15 14 46 46 H 1.08002 * 119.08189 * 179.37269 * 21 14 13 47 47 H 0.96997 * 120.55929 * 193.55616 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8781 -1.5212 5 6 2.4839 -0.8783 1.5211 6 6 1.9739 -2.3208 1.5210 7 6 2.4844 -3.0423 2.7699 8 7 1.9956 -4.4233 2.7701 9 6 2.3210 -5.2533 3.7809 10 8 3.0189 -4.8569 4.6901 11 6 1.8187 -6.6741 3.7808 12 6 2.7153 -7.5433 2.8875 13 6 2.1732 -8.9744 2.8985 14 6 1.9420 -9.4320 4.3104 15 6 1.8615 -10.9118 4.5839 16 8 3.1550 -11.4971 4.4219 17 14 1.2680 -11.1896 6.3278 18 1 -0.0762 -10.5813 6.4960 19 1 1.1882 -12.6478 6.5971 20 1 2.2185 -10.5612 7.2802 21 6 1.8028 -8.6008 5.3148 22 7 1.8788 -7.2242 5.1430 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 3.5740 1.7564 0.0005 27 1 2.1206 2.2703 -0.8899 28 1 2.1207 2.2702 0.8900 29 1 2.1205 -1.9059 -1.5213 30 1 2.1206 -0.3643 -2.4112 31 1 3.5739 -0.8785 -1.5210 32 1 2.1206 -0.3646 2.4111 33 1 3.5740 -0.8787 1.5208 34 1 2.3372 -2.8346 0.6310 35 1 0.8839 -2.3208 1.5210 36 1 2.1214 -2.5287 3.6601 37 1 3.5744 -3.0424 2.7694 38 1 1.4371 -4.7403 2.0431 39 1 0.7924 -6.7040 3.4151 40 1 2.7036 -7.1552 1.8690 41 1 3.7346 -7.5350 3.2735 42 1 1.2341 -9.0087 2.3462 43 1 2.8958 -9.6376 2.4230 44 1 1.1639 -11.3731 3.8848 45 1 3.8281 -11.1338 5.0137 46 1 1.6287 -8.9974 6.3041 47 1 1.9697 -6.6360 5.9089 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9704008_15413834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:55 Heat of formation + Delta-G solvation = -110.422182 kcal Electronic energy + Delta-G solvation = -22347.280425 eV Core-core repulsion = 19073.807899 eV Total energy + Delta-G solvation = -3273.472526 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.33710 -39.54249 -37.41049 -36.76216 -33.91414 -33.19061 -32.73026 -29.63703 -28.50361 -28.50073 -28.12455 -26.32317 -25.29875 -23.59404 -22.64428 -21.57002 -19.36795 -19.18353 -18.00597 -17.33494 -16.92203 -16.61499 -16.24920 -15.81045 -15.63490 -15.27848 -15.11544 -14.77525 -14.39657 -14.30995 -14.26956 -14.11747 -13.99832 -13.98773 -13.49960 -13.46937 -13.21128 -13.19101 -13.16581 -13.14607 -12.89727 -12.69037 -12.25979 -12.09045 -11.94527 -11.90301 -11.60014 -11.22628 -10.96678 -10.87499 -10.86735 -10.56633 -10.18070 -10.12179 -8.46115 1.27414 1.34765 1.46713 1.49885 1.56267 1.66883 1.78247 1.80561 1.94895 1.98624 2.54916 2.63345 3.49503 3.68902 3.73064 3.81422 3.92297 3.99205 4.00064 4.16682 4.30296 4.36527 4.55704 4.57837 4.59461 4.64172 4.66902 4.67210 4.68406 4.69657 4.69937 4.70557 4.78876 4.89095 5.04065 5.04965 5.18511 5.22199 5.28606 5.34313 5.42444 5.47624 5.48290 5.57599 6.20869 6.39400 6.74023 6.82771 7.08868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.013 2.987 3 C -0.453 4.453 4 C -0.451 4.451 5 C -0.412 4.412 6 C -0.121 4.121 7 C 0.118 3.882 8 N -0.727 5.727 9 C 0.510 3.490 10 O -0.532 6.532 11 C 0.136 3.864 12 C -0.126 4.126 13 C -0.053 4.053 14 C -0.279 4.279 15 C -0.056 4.056 16 O -0.545 6.545 17 Si 0.938 3.062 18 H -0.253 1.253 19 H -0.257 1.257 20 H -0.256 1.256 21 C 0.131 3.869 22 N -0.732 5.732 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.403 0.597 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.108 0.892 45 H 0.373 0.627 46 H 0.127 0.873 47 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.387 2.085 -3.213 4.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.209 2.791 3 C -0.560 4.560 4 C -0.559 4.559 5 C -0.497 4.497 6 C -0.159 4.159 7 C -0.005 4.005 8 N -0.380 5.380 9 C 0.295 3.705 10 O -0.407 6.407 11 C 0.026 3.974 12 C -0.165 4.165 13 C -0.090 4.090 14 C -0.289 4.289 15 C -0.168 4.168 16 O -0.349 6.349 17 Si 0.762 3.238 18 H -0.177 1.177 19 H -0.181 1.181 20 H -0.180 1.180 21 C 0.011 3.989 22 N -0.365 5.365 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.237 0.763 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.126 0.874 45 H 0.220 0.780 46 H 0.144 0.856 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.496 1.937 -2.261 3.885 hybrid contribution 0.151 0.586 -0.012 0.605 sum -2.346 2.523 -2.273 4.128 Atomic orbital electron populations 1.26173 1.20941 1.04326 1.04431 0.79145 0.66888 0.66730 0.66323 1.26151 1.06285 1.19145 1.04437 1.26171 1.06265 1.07975 1.15450 1.26147 1.06192 1.01237 1.16160 1.21425 1.01330 0.95782 0.97328 1.21543 0.99627 0.80290 0.99043 1.46015 1.53879 1.12720 1.25359 1.20617 0.80475 0.87243 0.82141 1.90738 1.37152 1.77036 1.35807 1.21010 1.00322 0.90161 0.85871 1.21864 0.99635 0.95946 0.99012 1.19955 1.01069 0.94288 0.93715 1.20937 1.16930 0.94882 0.96187 1.24604 0.89114 0.91656 1.11414 1.86485 1.19163 1.64318 1.64973 0.85900 0.80568 0.80949 0.76346 1.17685 1.18071 1.18009 1.20430 0.96933 0.83498 0.98081 1.44248 1.81722 1.04340 1.06217 0.91301 0.91300 0.91331 0.91270 0.91259 0.91286 0.91323 0.91297 0.91283 0.90271 0.90249 0.90972 0.91004 0.91365 0.91324 0.76296 0.89205 0.90318 0.90530 0.91509 0.90135 0.87419 0.78019 0.85607 0.75497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.19 8.65 101.05 0.87 2.06 16 2 Si 1.01 -3.94 12.19 -169.99 -2.07 -6.01 16 3 C -0.45 0.94 8.65 101.05 0.87 1.81 16 4 C -0.45 1.19 8.65 101.05 0.87 2.06 16 5 C -0.41 1.32 4.45 37.16 0.17 1.48 16 6 C -0.12 0.40 4.70 -26.73 -0.13 0.27 16 7 C 0.12 -0.12 5.67 -4.04 -0.02 -0.14 16 8 N -0.73 1.11 5.56 -60.30 -0.33 0.78 16 9 C 0.51 0.57 7.08 -10.99 -0.08 0.49 16 10 O -0.53 -2.78 16.10 5.56 0.09 -2.69 16 11 C 0.14 -0.06 3.36 -68.51 -0.23 -0.29 16 12 C -0.13 0.10 5.47 -26.43 -0.14 -0.04 16 13 C -0.05 0.02 5.85 -28.10 -0.16 -0.14 16 14 C -0.28 -0.08 5.37 -101.33 -0.54 -0.62 16 15 C -0.06 0.00 2.81 36.01 0.10 0.10 16 16 O -0.54 -0.59 12.88 -35.23 -0.45 -1.04 16 17 Si 0.94 -0.06 25.20 -169.99 -4.28 -4.35 16 18 H -0.25 -0.14 7.11 56.52 0.40 0.27 16 19 H -0.26 -0.42 7.11 56.52 0.40 -0.02 16 20 H -0.26 -0.03 6.88 56.52 0.39 0.35 16 21 C 0.13 0.06 9.62 -16.08 -0.15 -0.09 16 22 N -0.73 -0.55 5.46 -55.34 -0.30 -0.85 16 23 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 24 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 25 H 0.07 -0.20 7.79 -51.93 -0.40 -0.60 16 26 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.20 7.79 -51.92 -0.40 -0.60 16 30 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 31 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 32 H 0.08 -0.23 7.96 -51.93 -0.41 -0.65 16 33 H 0.08 -0.23 7.96 -51.92 -0.41 -0.65 16 34 H 0.07 -0.30 7.79 -51.93 -0.40 -0.70 16 35 H 0.07 -0.29 7.79 -51.93 -0.40 -0.70 16 36 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 37 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 38 H 0.40 -1.77 8.47 -40.82 -0.35 -2.11 16 39 H 0.09 -0.19 8.14 -51.93 -0.42 -0.61 16 40 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 41 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 42 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 43 H 0.08 0.02 8.14 -51.93 -0.42 -0.41 16 44 H 0.11 -0.06 7.96 -51.93 -0.41 -0.47 16 45 H 0.37 -0.68 8.70 45.56 0.40 -0.28 16 46 H 0.13 -0.06 4.33 -52.49 -0.23 -0.29 16 47 H 0.41 0.42 8.12 -40.82 -0.33 0.09 16 LS Contribution 376.24 15.07 5.67 5.67 Total: 0.00 -6.82 376.24 -8.29 -15.11 By element: Atomic # 1 Polarization: -5.53 SS G_CDS: -8.03 Total: -13.56 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 1.43 Total: 6.94 kcal Atomic # 7 Polarization: 0.56 SS G_CDS: -0.64 Total: -0.07 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: -0.36 Total: -3.73 kcal Atomic # 14 Polarization: -4.00 SS G_CDS: -6.36 Total: -10.35 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -6.82 -8.29 -15.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_15413834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.314 kcal (2) G-P(sol) polarization free energy of solvation -6.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds