Wall clock time and date at job start Tue Mar 9 2021 13:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86308 * 1 3 3 C 1.86293 * 109.46967 * 2 1 4 4 C 1.86299 * 109.46993 * 239.99911 * 2 1 3 5 5 C 1.86305 * 109.46989 * 119.99886 * 2 1 3 6 6 C 1.52995 * 109.47022 * 60.00098 * 5 2 1 7 7 C 1.53003 * 109.47198 * 179.97438 * 6 5 2 8 8 N 1.46498 * 109.47231 * 179.97438 * 7 6 5 9 9 C 1.34775 * 120.00094 * 179.97438 * 8 7 6 10 10 O 1.21281 * 119.99682 * 0.02562 * 9 8 7 11 11 C 1.50694 * 120.00369 * 179.97438 * 9 8 7 12 12 O 1.42899 * 109.47517 * 180.02562 * 11 9 8 13 13 C 1.35893 * 117.00392 * 180.02562 * 12 11 9 14 14 C 1.38736 * 120.05957 * 180.02562 * 13 12 11 15 15 C 1.38138 * 119.94337 * 180.30421 * 14 13 12 16 16 C 1.38270 * 120.05794 * 359.46080 * 15 14 13 17 17 C 1.50697 * 119.94421 * 180.26220 * 16 15 14 18 18 O 1.42906 * 109.46937 * 245.25362 * 17 16 15 19 19 Si 1.86302 * 109.47317 * 5.25234 * 17 16 15 20 20 H 1.48501 * 109.46902 * 60.00145 * 19 17 16 21 21 H 1.48499 * 109.47319 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47238 * 300.00423 * 19 17 16 23 23 C 1.38259 * 120.10998 * 0.51383 * 16 15 14 24 24 C 1.38146 * 120.05869 * 359.76954 * 23 16 15 25 25 H 1.08999 * 109.46517 * 300.00260 * 1 2 3 26 26 H 1.08998 * 109.46783 * 59.99924 * 1 2 3 27 27 H 1.09000 * 109.46631 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46911 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47431 * 299.99679 * 3 2 1 30 30 H 1.08999 * 109.47715 * 60.00473 * 3 2 1 31 31 H 1.09006 * 109.47019 * 300.00068 * 4 2 1 32 32 H 1.09003 * 109.47442 * 60.00034 * 4 2 1 33 33 H 1.09001 * 109.47142 * 179.97438 * 4 2 1 34 34 H 1.08994 * 109.47169 * 299.99729 * 5 2 1 35 35 H 1.09001 * 109.46897 * 179.97438 * 5 2 1 36 36 H 1.09007 * 109.47517 * 59.99696 * 6 5 2 37 37 H 1.09001 * 109.47102 * 299.99651 * 6 5 2 38 38 H 1.09002 * 109.46751 * 59.99972 * 7 6 5 39 39 H 1.09001 * 109.46991 * 299.99942 * 7 6 5 40 40 H 0.96997 * 120.00266 * 0.02562 * 8 7 6 41 41 H 1.09002 * 109.46946 * 60.00402 * 11 9 8 42 42 H 1.09001 * 109.47141 * 300.00160 * 11 9 8 43 43 H 1.08002 * 120.02291 * 0.02562 * 14 13 12 44 44 H 1.08004 * 119.96766 * 179.69880 * 15 14 13 45 45 H 1.09001 * 109.47205 * 125.25472 * 17 16 15 46 46 H 0.96700 * 113.99400 * 60.00283 * 18 17 16 47 47 H 1.08006 * 119.97187 * 179.74376 * 23 16 15 48 48 H 1.07993 * 120.03340 * 179.97438 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4841 -0.8782 1.5212 6 6 1.9741 -2.3207 1.5212 7 6 2.4845 -3.0421 2.7701 8 7 1.9957 -4.4232 2.7704 9 6 2.3220 -5.2533 3.7808 10 8 3.0200 -4.8568 4.6900 11 6 1.8187 -6.6737 3.7814 12 8 2.2956 -7.3476 4.9479 13 6 1.9302 -8.6473 5.1023 14 6 2.3571 -9.3621 6.2121 15 6 1.9894 -10.6850 6.3635 16 6 1.1873 -11.2937 5.4159 17 6 0.7828 -12.7353 5.5867 18 8 1.3609 -13.5192 4.5409 19 14 1.3858 -13.3583 7.2356 20 1 0.7851 -12.5436 8.3223 21 1 0.9867 -14.7787 7.4042 22 1 2.8655 -13.2489 7.2952 23 6 0.7600 -10.5834 4.3093 24 6 1.1298 -9.2619 4.1502 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 3.5740 1.7564 -0.0005 29 1 2.1207 2.2702 -0.8900 30 1 2.1208 2.2703 0.8900 31 1 2.1207 -1.9060 -1.5211 32 1 2.1207 -0.3645 -2.4112 33 1 3.5740 -0.8779 -1.5214 34 1 2.1208 -0.3644 2.4111 35 1 3.5741 -0.8786 1.5210 36 1 2.3374 -2.8346 0.6311 37 1 0.8841 -2.3207 1.5212 38 1 2.1215 -2.5284 3.6603 39 1 3.5746 -3.0421 2.7697 40 1 1.4378 -4.7403 2.0431 41 1 2.1806 -7.1878 2.8910 42 1 0.7287 -6.6730 3.7828 43 1 2.9802 -8.8858 6.9546 44 1 2.3256 -11.2432 7.2248 45 1 -0.3033 -12.8155 5.5430 46 1 2.3273 -13.4946 4.5193 47 1 0.1369 -11.0623 3.5684 48 1 0.7961 -8.7076 3.2855 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9704008_2989410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:17 Heat of formation + Delta-G solvation = -134.340342 kcal Electronic energy + Delta-G solvation = -24142.213781 eV Core-core repulsion = 20513.533143 eV Total energy + Delta-G solvation = -3628.680638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.167 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.52671 -40.52491 -39.01996 -37.19088 -36.74269 -33.76471 -32.21586 -31.97682 -29.99075 -29.48440 -28.50574 -28.49845 -26.73365 -26.03440 -24.01825 -22.66971 -22.38716 -21.47858 -19.51246 -18.49541 -18.14946 -17.56078 -17.14942 -16.73168 -16.60285 -16.46007 -16.11053 -15.50048 -15.27076 -15.10615 -14.96921 -14.40859 -14.38487 -14.27895 -14.16809 -14.03146 -14.00248 -13.72629 -13.47816 -13.40355 -13.33117 -13.19692 -13.18087 -13.16438 -12.69830 -12.26227 -12.22628 -12.17078 -12.04884 -11.93728 -11.54895 -11.01398 -10.88310 -10.87783 -10.59298 -10.41322 -10.19117 -10.06107 -9.21838 0.23671 0.33727 1.16159 1.42222 1.43447 1.49639 1.52191 1.72487 1.79468 1.80264 1.91965 2.52136 2.59730 2.64971 3.45568 3.48741 3.69405 3.73581 3.86121 3.86536 3.89027 3.93688 3.99049 4.16173 4.22500 4.36737 4.56235 4.56450 4.59035 4.62287 4.63841 4.66617 4.68075 4.69766 4.69882 4.70318 4.89208 4.97168 5.04723 5.16251 5.21483 5.28031 5.32360 5.42176 5.46675 5.47172 5.48301 5.64051 6.22211 6.37160 6.54575 7.09299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.012 2.988 3 C -0.453 4.453 4 C -0.451 4.451 5 C -0.412 4.412 6 C -0.121 4.121 7 C 0.120 3.880 8 N -0.729 5.729 9 C 0.514 3.486 10 O -0.513 6.513 11 C 0.040 3.960 12 O -0.288 6.288 13 C 0.134 3.866 14 C -0.141 4.141 15 C -0.084 4.084 16 C -0.158 4.158 17 C -0.075 4.075 18 O -0.540 6.540 19 Si 0.946 3.054 20 H -0.250 1.250 21 H -0.254 1.254 22 H -0.251 1.251 23 C -0.048 4.048 24 C -0.210 4.210 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.402 0.598 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.137 0.863 44 H 0.128 0.872 45 H 0.117 0.883 46 H 0.376 0.624 47 H 0.132 0.868 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.342 0.925 -4.357 5.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.208 2.792 3 C -0.560 4.560 4 C -0.559 4.559 5 C -0.498 4.498 6 C -0.159 4.159 7 C -0.003 4.003 8 N -0.384 5.384 9 C 0.298 3.702 10 O -0.387 6.387 11 C -0.039 4.039 12 O -0.201 6.201 13 C 0.088 3.912 14 C -0.159 4.159 15 C -0.102 4.102 16 C -0.159 4.159 17 C -0.186 4.186 18 O -0.345 6.345 19 Si 0.769 3.231 20 H -0.173 1.173 21 H -0.178 1.178 22 H -0.175 1.175 23 C -0.066 4.066 24 C -0.229 4.229 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.236 0.764 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.155 0.845 44 H 0.145 0.855 45 H 0.135 0.865 46 H 0.223 0.777 47 H 0.149 0.851 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.024 0.913 -2.849 3.612 hybrid contribution -0.011 0.238 -0.881 0.912 sum -2.036 1.151 -3.730 4.402 Atomic orbital electron populations 1.26170 1.20924 1.04317 1.04451 0.79160 0.66911 0.66778 0.66318 1.26146 1.06297 1.19110 1.04452 1.26172 1.06278 1.07958 1.15457 1.26147 1.06238 1.01187 1.16195 1.21430 1.01354 0.95803 0.97278 1.21560 0.99712 0.79896 0.99151 1.45884 1.54451 1.12823 1.25206 1.20034 0.81035 0.86616 0.82511 1.90789 1.36199 1.76647 1.35083 1.22480 1.00492 0.91558 0.89332 1.86166 1.70308 1.21656 1.41934 1.19076 0.94271 0.83035 0.94775 1.20384 1.03946 0.93857 0.97746 1.20885 0.96622 0.94297 0.98372 1.20215 1.01696 0.97101 0.96860 1.24892 1.02910 0.88610 1.02172 1.86512 1.25260 1.69566 1.53176 0.85730 0.80793 0.80786 0.75753 1.17325 1.17797 1.17518 1.20798 0.96916 0.92562 0.96323 1.21304 1.03770 0.97036 1.00776 0.91274 0.91293 0.91342 0.91258 0.91262 0.91255 0.91339 0.91296 0.91271 0.90202 0.90204 0.90971 0.90968 0.91198 0.91192 0.76367 0.88710 0.88712 0.84525 0.85461 0.86539 0.77655 0.85058 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.20 8.65 101.05 0.87 2.08 16 2 Si 1.01 -3.93 12.19 -169.99 -2.07 -6.00 16 3 C -0.45 0.93 8.65 101.05 0.87 1.81 16 4 C -0.45 1.20 8.65 101.05 0.87 2.08 16 5 C -0.41 1.31 4.45 37.15 0.17 1.47 16 6 C -0.12 0.40 4.70 -26.73 -0.13 0.28 16 7 C 0.12 -0.11 5.67 -4.04 -0.02 -0.13 16 8 N -0.73 1.11 5.56 -60.30 -0.33 0.78 16 9 C 0.51 0.89 7.91 -10.99 -0.09 0.80 16 10 O -0.51 -3.56 16.50 -14.35 -0.24 -3.80 16 11 C 0.04 -0.03 5.22 36.00 0.19 0.16 16 12 O -0.29 -0.88 9.67 -39.31 -0.38 -1.26 16 13 C 0.13 0.26 6.69 -39.21 -0.26 0.00 16 14 C -0.14 -0.25 9.99 -39.43 -0.39 -0.65 16 15 C -0.08 -0.06 8.66 -39.61 -0.34 -0.41 16 16 C -0.16 -0.06 5.35 -104.60 -0.56 -0.62 16 17 C -0.08 0.04 2.80 36.00 0.10 0.14 16 18 O -0.54 -0.09 12.83 -35.23 -0.45 -0.54 16 19 Si 0.95 -0.50 25.14 -169.99 -4.27 -4.77 16 20 H -0.25 -0.04 7.11 56.52 0.40 0.36 16 21 H -0.25 -0.24 7.11 56.52 0.40 0.16 16 22 H -0.25 0.09 7.03 56.52 0.40 0.49 16 23 C -0.05 -0.01 9.68 -39.61 -0.38 -0.39 16 24 C -0.21 -0.01 9.04 -39.43 -0.36 -0.37 16 25 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 26 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 27 H 0.07 -0.20 7.79 -51.93 -0.40 -0.61 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 31 H 0.07 -0.20 7.79 -51.93 -0.40 -0.61 16 32 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 33 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 34 H 0.08 -0.23 7.96 -51.93 -0.41 -0.65 16 35 H 0.08 -0.23 7.96 -51.93 -0.41 -0.65 16 36 H 0.07 -0.31 7.79 -51.92 -0.40 -0.71 16 37 H 0.07 -0.31 7.79 -51.93 -0.40 -0.71 16 38 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 39 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 40 H 0.40 -2.00 8.47 -40.82 -0.35 -2.34 16 41 H 0.10 -0.31 7.66 -51.93 -0.40 -0.71 16 42 H 0.10 -0.31 7.67 -51.93 -0.40 -0.71 16 43 H 0.14 0.16 8.06 -52.49 -0.42 -0.27 16 44 H 0.13 -0.08 4.86 -52.48 -0.25 -0.33 16 45 H 0.12 -0.16 7.96 -51.93 -0.41 -0.58 16 46 H 0.38 -1.08 8.70 45.56 0.40 -0.69 16 47 H 0.13 -0.14 8.06 -52.48 -0.42 -0.56 16 48 H 0.13 -0.33 6.30 -52.49 -0.33 -0.66 16 LS Contribution 396.09 15.07 5.97 5.97 Total: 0.00 -9.03 396.09 -8.81 -17.84 By element: Atomic # 1 Polarization: -6.89 SS G_CDS: -7.58 Total: -14.46 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 0.54 Total: 6.25 kcal Atomic # 7 Polarization: 1.11 SS G_CDS: -0.33 Total: 0.78 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -1.07 Total: -5.60 kcal Atomic # 14 Polarization: -4.42 SS G_CDS: -6.35 Total: -10.77 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -9.03 -8.81 -17.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_2989410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.502 kcal (2) G-P(sol) polarization free energy of solvation -9.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds