Wall clock time and date at job start Tue Mar 9 2021 13:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86300 * 109.47459 * 2 1 4 4 C 1.86300 * 109.46878 * 239.99917 * 2 1 3 5 5 C 1.86301 * 109.47106 * 120.00216 * 2 1 3 6 6 C 1.53000 * 109.46997 * 60.00000 * 5 2 1 7 7 C 1.53005 * 109.46632 * 180.02562 * 6 5 2 8 8 N 1.46505 * 109.46784 * 179.97438 * 7 6 5 9 9 C 1.34777 * 120.00115 * 179.97438 * 8 7 6 10 10 O 1.21288 * 119.99593 * 0.02562 * 9 8 7 11 11 C 1.50697 * 120.00369 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.47466 * 180.02562 * 11 9 8 13 13 O 1.42898 * 109.47319 * 180.02562 * 12 11 9 14 14 C 1.35900 * 117.00172 * 179.97438 * 13 12 11 15 15 C 1.38710 * 120.05544 * 359.72769 * 14 13 12 16 16 C 1.38159 * 119.94311 * 179.72143 * 15 14 13 17 17 C 1.38250 * 120.05742 * 0.57011 * 16 15 14 18 18 C 1.38280 * 120.10833 * 359.68104 * 17 16 15 19 19 C 1.50697 * 119.97205 * 180.02562 * 18 17 16 20 20 O 1.42902 * 109.47393 * 245.02079 * 19 18 17 21 21 Si 1.86306 * 109.47148 * 5.02162 * 19 18 17 22 22 H 1.48495 * 109.47180 * 179.97438 * 21 19 18 23 23 H 1.48491 * 109.46932 * 300.00295 * 21 19 18 24 24 H 1.48504 * 109.46673 * 59.99962 * 21 19 18 25 25 C 1.38129 * 120.05716 * 0.04353 * 18 17 16 26 26 H 1.09002 * 109.46890 * 299.99904 * 1 2 3 27 27 H 1.09000 * 109.47207 * 59.99758 * 1 2 3 28 28 H 1.09004 * 109.47212 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.46912 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47108 * 300.00303 * 3 2 1 31 31 H 1.09002 * 109.46724 * 59.99677 * 3 2 1 32 32 H 1.09000 * 109.47413 * 299.99608 * 4 2 1 33 33 H 1.08996 * 109.47015 * 60.00644 * 4 2 1 34 34 H 1.09001 * 109.47083 * 179.97438 * 4 2 1 35 35 H 1.09002 * 109.47148 * 299.99722 * 5 2 1 36 36 H 1.09001 * 109.47357 * 179.97438 * 5 2 1 37 37 H 1.08992 * 109.47399 * 59.99867 * 6 5 2 38 38 H 1.09001 * 109.47194 * 299.99695 * 6 5 2 39 39 H 1.09002 * 109.47193 * 60.00246 * 7 6 5 40 40 H 1.08992 * 109.47333 * 299.99245 * 7 6 5 41 41 H 0.97003 * 120.00244 * 359.97438 * 8 7 6 42 42 H 1.09002 * 109.47120 * 59.99760 * 11 9 8 43 43 H 1.08998 * 109.46862 * 300.00562 * 11 9 8 44 44 H 1.09002 * 109.47153 * 59.99773 * 12 11 9 45 45 H 1.09001 * 109.46832 * 299.99964 * 12 11 9 46 46 H 1.08006 * 120.02494 * 359.97438 * 15 14 13 47 47 H 1.08006 * 119.97038 * 180.27439 * 16 15 14 48 48 H 1.08000 * 119.94133 * 179.70045 * 17 16 15 49 49 H 1.09005 * 109.47122 * 125.02014 * 19 18 17 50 50 H 0.96703 * 113.99614 * 179.97438 * 20 19 18 51 51 H 1.07998 * 120.02418 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4840 -0.8783 1.5211 6 6 1.9740 -2.3208 1.5210 7 6 2.4835 -3.0418 2.7706 8 7 1.9947 -4.4229 2.7709 9 6 2.3201 -5.2528 3.7817 10 8 3.0174 -4.8561 4.6914 11 6 1.8178 -6.6736 3.7818 12 6 2.3272 -7.3947 5.0313 13 8 1.8513 -8.7421 5.0310 14 6 2.2164 -9.5256 6.0797 15 6 3.0208 -9.0100 7.0852 16 6 3.3859 -9.8069 8.1531 17 6 2.9599 -11.1207 8.2142 18 6 2.1622 -11.6387 7.2104 19 6 1.6992 -13.0710 7.2803 20 8 2.2719 -13.8102 6.1997 21 14 2.2379 -13.8195 8.8991 22 1 1.7811 -15.2308 8.9683 23 1 3.7188 -13.7726 8.9975 24 1 1.6425 -13.0514 10.0220 25 6 1.7898 -10.8444 6.1434 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.5740 1.7563 -0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1207 2.2702 0.8900 32 1 2.1206 -1.9059 -1.5211 33 1 2.1207 -0.3644 -2.4111 34 1 3.5739 -0.8779 -1.5214 35 1 2.1207 -0.3645 2.4111 36 1 3.5740 -0.8787 1.5209 37 1 2.3372 -2.8346 0.6311 38 1 0.8840 -2.3208 1.5211 39 1 2.1198 -2.5279 3.6604 40 1 3.5734 -3.0419 2.7710 41 1 1.4367 -4.7401 2.0435 42 1 2.1812 -7.1875 2.8918 43 1 0.7278 -6.6735 3.7816 44 1 1.9634 -6.8807 5.9211 45 1 3.4172 -7.3947 5.0318 46 1 3.3581 -7.9852 7.0354 47 1 4.0085 -9.4045 8.9386 48 1 3.2504 -11.7434 9.0474 49 1 0.6121 -13.1054 7.2081 50 1 2.0167 -14.7427 6.1823 51 1 1.1665 -11.2493 5.3600 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704008_4549614.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:29 Heat of formation + Delta-G solvation = -138.597247 kcal Electronic energy + Delta-G solvation = -25735.174036 eV Core-core repulsion = 21950.771185 eV Total energy + Delta-G solvation = -3784.402851 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.182 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.39923 -40.75183 -39.06333 -37.33001 -36.81241 -33.85995 -32.95687 -32.60406 -30.87115 -29.41365 -28.30135 -28.26486 -27.42612 -26.75494 -24.77720 -23.70902 -22.47097 -21.97499 -21.21326 -19.17067 -18.46686 -17.88792 -17.54927 -17.41218 -17.22624 -16.79807 -16.63744 -15.85316 -15.68345 -15.59837 -14.93603 -14.72848 -14.52778 -14.30530 -14.18984 -14.14737 -14.05308 -13.89348 -13.77000 -13.48796 -13.38393 -13.29211 -13.04824 -13.03706 -12.96274 -12.91429 -12.89604 -12.48433 -12.37068 -12.10540 -11.88694 -11.82775 -11.70068 -11.64644 -11.16361 -10.68864 -10.64495 -10.40026 -10.36792 -10.15676 -9.92222 -9.29962 0.17130 0.35282 1.15558 1.47790 1.51308 1.53005 1.69694 1.92221 1.99470 2.03952 2.08062 2.52752 2.61099 2.78076 3.44639 3.55768 3.79285 3.84997 3.87900 3.96117 4.04264 4.12940 4.18144 4.22226 4.24084 4.35254 4.39447 4.48445 4.61832 4.65558 4.71398 4.75673 4.79332 4.83169 4.83781 4.88456 4.89825 4.91021 4.91134 4.95554 5.08673 5.21407 5.27898 5.33416 5.36904 5.41567 5.52684 5.62046 5.65811 5.69318 5.71028 6.30427 6.47078 6.82472 7.15768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.087 2.913 3 C -0.474 4.474 4 C -0.466 4.466 5 C -0.422 4.422 6 C -0.119 4.119 7 C 0.116 3.884 8 N -0.717 5.717 9 C 0.515 3.485 10 O -0.589 6.589 11 C -0.132 4.132 12 C 0.073 3.927 13 O -0.321 6.321 14 C 0.118 3.882 15 C -0.213 4.213 16 C -0.077 4.077 17 C -0.173 4.173 18 C -0.049 4.049 19 C -0.085 4.085 20 O -0.562 6.562 21 Si 0.984 3.016 22 H -0.252 1.252 23 H -0.270 1.270 24 H -0.258 1.258 25 C -0.136 4.136 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.420 0.580 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.138 0.862 47 H 0.150 0.850 48 H 0.132 0.868 49 H 0.098 0.902 50 H 0.399 0.601 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.738 -0.202 -3.358 5.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.278 2.722 3 C -0.580 4.580 4 C -0.572 4.572 5 C -0.507 4.507 6 C -0.156 4.156 7 C -0.008 4.008 8 N -0.369 5.369 9 C 0.303 3.697 10 O -0.469 6.469 11 C -0.171 4.171 12 C -0.002 4.002 13 O -0.235 6.235 14 C 0.073 3.927 15 C -0.231 4.231 16 C -0.095 4.095 17 C -0.191 4.191 18 C -0.049 4.049 19 C -0.195 4.195 20 O -0.372 6.372 21 Si 0.808 3.192 22 H -0.176 1.176 23 H -0.195 1.195 24 H -0.182 1.182 25 C -0.154 4.154 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.257 0.743 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.156 0.844 47 H 0.168 0.832 48 H 0.150 0.850 49 H 0.116 0.884 50 H 0.250 0.750 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.846 0.271 -2.243 3.634 hybrid contribution -0.200 0.024 -0.366 0.418 sum -3.046 0.296 -2.609 4.021 Atomic orbital electron populations 1.26344 1.22081 1.04657 1.04114 0.78008 0.65150 0.64359 0.64680 1.26427 1.06272 1.21127 1.04124 1.26347 1.06202 1.08617 1.16054 1.26299 1.06176 1.01529 1.16696 1.21461 1.02184 0.95408 0.96557 1.21540 0.98785 0.80753 0.99683 1.45954 1.53411 1.12359 1.25185 1.20691 0.79478 0.88050 0.81526 1.90735 1.40081 1.78461 1.37662 1.21436 1.05092 0.90793 0.99810 1.22446 0.99230 0.79329 0.99238 1.85948 1.71300 1.23751 1.42464 1.19133 0.94939 0.91137 0.87499 1.21529 1.03131 1.02028 0.96431 1.21178 0.97760 0.93058 0.97492 1.21161 1.00739 0.97016 1.00213 1.19357 0.96711 0.94668 0.94194 1.24853 1.01631 0.91197 1.01807 1.86471 1.73943 1.27172 1.49575 0.85205 0.79722 0.79420 0.74830 1.17639 1.19539 1.18193 1.20357 1.04197 0.90822 1.00048 0.91556 0.91698 0.90689 0.91578 0.91618 0.91560 0.90697 0.91699 0.91583 0.90497 0.90526 0.89629 0.89599 0.92840 0.92882 0.74292 0.85484 0.85344 0.91654 0.91894 0.84429 0.83223 0.85011 0.88431 0.75036 0.84483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.60 8.65 113.37 0.98 3.58 16 2 Si 1.09 -8.46 12.19 68.60 0.84 -7.63 16 3 C -0.47 1.65 8.65 113.37 0.98 2.63 16 4 C -0.47 2.56 8.65 113.37 0.98 3.54 16 5 C -0.42 2.61 4.45 71.98 0.32 2.94 16 6 C -0.12 0.82 4.70 30.60 0.14 0.96 16 7 C 0.12 -0.14 5.67 86.38 0.49 0.35 16 8 N -0.72 2.19 5.56 -463.05 -2.57 -0.38 16 9 C 0.52 1.23 7.83 87.66 0.69 1.92 16 10 O -0.59 -7.08 15.98 -3.05 -0.05 -7.13 16 11 C -0.13 0.36 6.07 29.85 0.18 0.54 16 12 C 0.07 0.22 4.03 71.98 0.29 0.51 16 13 O -0.32 -1.91 10.14 -92.43 -0.94 -2.84 16 14 C 0.12 0.89 6.69 22.50 0.15 1.04 16 15 C -0.21 -1.29 9.04 22.36 0.20 -1.09 16 16 C -0.08 -0.34 10.04 22.25 0.22 -0.12 16 17 C -0.17 -0.87 8.67 22.28 0.19 -0.67 16 18 C -0.05 -0.27 5.38 -19.88 -0.11 -0.38 16 19 C -0.09 -0.03 2.79 71.23 0.20 0.16 16 20 O -0.56 -0.74 12.81 -148.98 -1.91 -2.65 16 21 Si 0.98 -0.58 25.14 68.60 1.72 1.14 16 22 H -0.25 0.38 7.11 99.48 0.71 1.09 16 23 H -0.27 -0.82 7.04 99.48 0.70 -0.12 16 24 H -0.26 -0.17 7.11 99.48 0.71 0.54 16 25 C -0.14 -0.95 9.62 22.37 0.22 -0.73 16 26 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 27 H 0.06 -0.29 7.96 -2.39 -0.02 -0.31 16 28 H 0.07 -0.50 7.79 -2.38 -0.02 -0.52 16 29 H 0.06 -0.19 7.96 -2.39 -0.02 -0.21 16 30 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 31 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 32 H 0.07 -0.49 7.79 -2.39 -0.02 -0.51 16 33 H 0.06 -0.28 7.96 -2.39 -0.02 -0.30 16 34 H 0.06 -0.30 7.96 -2.39 -0.02 -0.32 16 35 H 0.08 -0.42 7.96 -2.39 -0.02 -0.43 16 36 H 0.08 -0.41 7.96 -2.39 -0.02 -0.43 16 37 H 0.09 -0.79 7.79 -2.39 -0.02 -0.81 16 38 H 0.09 -0.80 7.79 -2.39 -0.02 -0.82 16 39 H 0.05 0.10 8.14 -2.39 -0.02 0.09 16 40 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.42 -4.20 8.47 -92.71 -0.79 -4.98 16 42 H 0.13 -0.82 8.14 -2.39 -0.02 -0.84 16 43 H 0.13 -0.88 8.14 -2.39 -0.02 -0.90 16 44 H 0.07 0.28 7.63 -2.39 -0.02 0.26 16 45 H 0.06 0.30 7.61 -2.39 -0.02 0.28 16 46 H 0.14 0.58 6.30 -2.91 -0.02 0.56 16 47 H 0.15 -0.08 8.06 -2.91 -0.02 -0.10 16 48 H 0.13 0.27 4.86 -2.91 -0.01 0.25 16 49 H 0.10 -0.38 7.96 -2.38 -0.02 -0.40 16 50 H 0.40 -3.29 8.74 -74.06 -0.65 -3.94 16 51 H 0.14 0.73 8.06 -2.91 -0.02 0.71 16 Total: 0.00 -20.59 417.10 3.45 -17.14 By element: Atomic # 1 Polarization: -13.06 SS G_CDS: 0.22 Total: -12.84 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 6.13 Total: 15.19 kcal Atomic # 7 Polarization: 2.19 SS G_CDS: -2.57 Total: -0.38 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -2.89 Total: -12.62 kcal Atomic # 14 Polarization: -9.05 SS G_CDS: 2.56 Total: -6.48 kcal Total: -20.59 3.45 -17.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_4549614.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.455 kcal (2) G-P(sol) polarization free energy of solvation -20.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds