Wall clock time and date at job start Tue Mar 9 2021 13:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86297 * 109.47511 * 2 1 4 4 C 1.86301 * 109.47231 * 239.99830 * 2 1 3 5 5 C 1.86302 * 109.47198 * 120.00141 * 2 1 3 6 6 C 1.53002 * 109.47258 * 59.99483 * 5 2 1 7 7 C 1.52998 * 109.46842 * 180.02562 * 6 5 2 8 8 N 1.46507 * 109.46826 * 180.02562 * 7 6 5 9 9 C 1.34774 * 119.99975 * 180.02562 * 8 7 6 10 10 O 1.21277 * 119.99884 * 359.97438 * 9 8 7 11 11 C 1.50696 * 119.99994 * 179.97438 * 9 8 7 12 12 O 1.42899 * 109.47561 * 180.02562 * 11 9 8 13 13 C 1.35894 * 117.00434 * 180.02562 * 12 11 9 14 14 C 1.38709 * 120.05744 * 359.97438 * 13 12 11 15 15 C 1.38159 * 119.94698 * 180.02562 * 14 13 12 16 16 C 1.38241 * 120.05581 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.94735 * 179.97438 * 16 15 14 18 18 O 1.42895 * 109.47147 * 245.00352 * 17 16 15 19 19 Si 1.86299 * 109.46748 * 4.99994 * 17 16 15 20 20 H 1.48503 * 109.47188 * 60.00070 * 19 17 16 21 21 H 1.48506 * 109.47139 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47505 * 299.99883 * 19 17 16 23 23 C 1.38293 * 120.11270 * 0.27563 * 16 15 14 24 24 C 1.38126 * 120.05159 * 359.45046 * 23 16 15 25 25 N 1.48002 * 120.02520 * 180.29946 * 24 23 16 26 26 O 1.21798 * 120.00044 * 0.24677 * 25 24 23 27 27 O 1.21801 * 119.99648 * 180.25377 * 25 24 23 28 28 H 1.09006 * 109.46901 * 300.00266 * 1 2 3 29 29 H 1.08995 * 109.47001 * 59.99834 * 1 2 3 30 30 H 1.08994 * 109.47183 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47210 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46892 * 300.00047 * 3 2 1 33 33 H 1.09000 * 109.47295 * 59.99495 * 3 2 1 34 34 H 1.09005 * 109.47194 * 300.00420 * 4 2 1 35 35 H 1.09000 * 109.47243 * 59.99623 * 4 2 1 36 36 H 1.08992 * 109.47382 * 180.02562 * 4 2 1 37 37 H 1.09006 * 109.46862 * 299.99617 * 5 2 1 38 38 H 1.08996 * 109.47615 * 180.02562 * 5 2 1 39 39 H 1.09003 * 109.46573 * 60.00205 * 6 5 2 40 40 H 1.09000 * 109.47137 * 300.00037 * 6 5 2 41 41 H 1.08996 * 109.47743 * 60.00277 * 7 6 5 42 42 H 1.09000 * 109.47092 * 299.99828 * 7 6 5 43 43 H 0.96996 * 119.99778 * 359.97438 * 8 7 6 44 44 H 1.08998 * 109.47376 * 59.99560 * 11 9 8 45 45 H 1.09005 * 109.46967 * 300.00150 * 11 9 8 46 46 H 1.08008 * 120.02343 * 359.97438 * 14 13 12 47 47 H 1.08008 * 119.97393 * 179.97438 * 15 14 13 48 48 H 1.09000 * 109.47318 * 124.99465 * 17 16 15 49 49 H 0.96695 * 114.00385 * 59.99326 * 18 17 16 50 50 H 1.08002 * 119.97160 * 179.70751 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8783 1.5211 6 6 1.9739 -2.3208 1.5212 7 6 2.4835 -3.0417 2.7707 8 7 1.9955 -4.4232 2.7705 9 6 2.3204 -5.2528 3.7818 10 8 3.0170 -4.8558 4.6917 11 6 1.8180 -6.6735 3.7818 12 8 2.2930 -7.3468 4.9494 13 6 1.9280 -8.6467 5.1034 14 6 1.1289 -9.2616 4.1509 15 6 0.7589 -10.5831 4.3101 16 6 1.1848 -11.2928 5.4173 17 6 0.7791 -12.7341 5.5888 18 8 -0.0555 -12.8601 6.7418 19 14 -0.1564 -13.2995 4.0803 20 1 0.7109 -13.1686 2.8820 21 1 -0.5556 -14.7199 4.2489 22 1 -1.3698 -12.4611 3.9071 23 6 1.9773 -10.6807 6.3711 24 6 2.3546 -9.3613 6.2137 25 7 3.2083 -8.7087 7.2315 26 8 3.5820 -9.3364 8.2061 27 8 3.5369 -7.5439 7.0945 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.5741 1.7563 -0.0005 32 1 2.1208 2.2702 -0.8900 33 1 2.1207 2.2703 0.8899 34 1 2.1206 -1.9060 -1.5211 35 1 2.1207 -0.3645 -2.4111 36 1 3.5739 -0.8787 -1.5209 37 1 2.1207 -0.3644 2.4111 38 1 3.5740 -0.8779 1.5214 39 1 2.3373 -2.8346 0.6312 40 1 0.8839 -2.3207 1.5212 41 1 2.1199 -2.5278 3.6605 42 1 3.5735 -3.0418 2.7711 43 1 1.4381 -4.7405 2.0429 44 1 2.1819 -7.1876 2.8922 45 1 0.7280 -6.6735 3.7810 46 1 0.7956 -8.7073 3.2858 47 1 0.1363 -11.0622 3.5688 48 1 1.6697 -13.3496 5.7158 49 1 -0.8683 -12.3382 6.6980 50 1 2.3048 -11.2359 7.2376 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9704008_4549638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:09 Heat of formation + Delta-G solvation = -126.347985 kcal Electronic energy + Delta-G solvation = -30625.408126 eV Core-core repulsion = 26166.057627 eV Total energy + Delta-G solvation = -4459.350499 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 370.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.01493 -41.74676 -40.72364 -39.50061 -37.57472 -37.12821 -36.79605 -33.84476 -33.45726 -32.39319 -30.31579 -29.56197 -28.52607 -28.51053 -27.60345 -27.01192 -26.35109 -24.06017 -22.82904 -22.66175 -21.63776 -20.46638 -19.46418 -19.24955 -18.54732 -18.34186 -18.30436 -17.71458 -17.24773 -16.94842 -16.69879 -16.52211 -16.26484 -15.85168 -15.55055 -15.42492 -15.15967 -14.43997 -14.30001 -14.28155 -14.16891 -14.06244 -14.00873 -13.97398 -13.51358 -13.49759 -13.31869 -13.23017 -13.20187 -13.18255 -12.71632 -12.58202 -12.55139 -12.37746 -12.18972 -11.97835 -11.95954 -11.84031 -11.72351 -11.06372 -10.93332 -10.90189 -10.89507 -10.75218 -10.61621 -10.22120 -9.91624 -1.13393 -0.38356 0.38278 0.52886 0.87603 1.09120 1.15863 1.24044 1.43715 1.67621 1.69092 1.77375 1.78804 1.92754 2.24710 2.54068 2.97593 3.01916 3.19460 3.26789 3.40068 3.52460 3.56839 3.62185 3.69897 3.90893 3.96252 4.12825 4.15105 4.17332 4.34480 4.42017 4.55274 4.57135 4.61823 4.64876 4.66119 4.66198 4.68129 4.69103 4.69121 4.87614 4.92778 5.03132 5.18598 5.29476 5.40185 5.44648 5.45134 5.47350 5.71036 6.26618 6.29307 6.94705 7.04936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.013 2.987 3 C -0.453 4.453 4 C -0.452 4.452 5 C -0.413 4.413 6 C -0.120 4.120 7 C 0.120 3.880 8 N -0.729 5.729 9 C 0.511 3.489 10 O -0.496 6.496 11 C 0.030 3.970 12 O -0.253 6.253 13 C 0.200 3.800 14 C -0.209 4.209 15 C -0.033 4.033 16 C -0.158 4.158 17 C -0.078 4.078 18 O -0.534 6.534 19 Si 0.948 3.052 20 H -0.247 1.247 21 H -0.245 1.245 22 H -0.249 1.249 23 C 0.012 3.988 24 C -0.075 4.075 25 N 0.028 4.972 26 O -0.175 6.175 27 O -0.119 6.119 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.401 0.599 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.156 0.844 47 H 0.143 0.857 48 H 0.125 0.875 49 H 0.378 0.622 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.292 -0.948 -9.717 11.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.209 2.791 3 C -0.560 4.560 4 C -0.559 4.559 5 C -0.498 4.498 6 C -0.158 4.158 7 C -0.003 4.003 8 N -0.384 5.384 9 C 0.294 3.706 10 O -0.369 6.369 11 C -0.048 4.048 12 O -0.162 6.162 13 C 0.150 3.850 14 C -0.228 4.228 15 C -0.051 4.051 16 C -0.160 4.160 17 C -0.189 4.189 18 O -0.339 6.339 19 Si 0.769 3.231 20 H -0.170 1.170 21 H -0.169 1.169 22 H -0.173 1.173 23 C -0.006 4.006 24 C -0.160 4.160 25 N 0.548 4.452 26 O -0.384 6.384 27 O -0.342 6.342 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.235 0.765 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.173 0.827 47 H 0.160 0.840 48 H 0.143 0.857 49 H 0.225 0.775 50 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.007 -1.553 -9.877 11.664 hybrid contribution -0.340 0.564 -0.143 0.674 sum -6.347 -0.989 -10.020 11.902 Atomic orbital electron populations 1.26172 1.20960 1.04277 1.04461 0.79148 0.66861 0.66797 0.66293 1.26149 1.06319 1.19108 1.04456 1.26173 1.06298 1.07917 1.15482 1.26150 1.06291 1.01150 1.16206 1.21426 1.01307 0.95841 0.97240 1.21575 0.99822 0.79690 0.99191 1.45859 1.54657 1.12868 1.25021 1.19806 0.81568 0.86252 0.82930 1.90870 1.35333 1.76138 1.34515 1.22746 1.00925 0.92597 0.88548 1.86506 1.68411 1.19395 1.41913 1.18694 0.90694 0.84107 0.91471 1.21246 1.03702 0.96817 1.01044 1.21306 0.94637 0.93315 0.95861 1.20284 1.01797 0.98292 0.95581 1.25021 1.00383 0.93414 1.00045 1.86577 1.35800 1.71471 1.40024 0.85710 0.79790 0.81914 0.75642 1.17035 1.16871 1.17253 1.20852 0.90902 0.90113 0.98772 1.20603 1.07402 0.95064 0.92916 1.43335 0.99744 1.01196 1.00883 1.94554 1.58182 1.65347 1.20364 1.94704 1.58064 0.99221 1.82214 0.91259 0.91305 0.91381 0.91240 0.91277 0.91239 0.91384 0.91306 0.91257 0.90160 0.90156 0.91006 0.91013 0.91075 0.91082 0.76485 0.88063 0.88081 0.82675 0.83961 0.85678 0.77453 0.81620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.33 8.65 101.05 0.87 2.20 16 2 Si 1.01 -4.18 12.19 -169.99 -2.07 -6.25 16 3 C -0.45 1.00 8.65 101.05 0.87 1.87 16 4 C -0.45 1.33 8.65 101.05 0.87 2.20 16 5 C -0.41 1.42 4.45 37.16 0.17 1.58 16 6 C -0.12 0.46 4.70 -26.73 -0.13 0.33 16 7 C 0.12 -0.16 5.67 -4.04 -0.02 -0.19 16 8 N -0.73 1.71 5.56 -60.29 -0.33 1.38 16 9 C 0.51 0.49 7.91 -10.99 -0.09 0.40 16 10 O -0.50 -3.35 16.50 -14.35 -0.24 -3.59 16 11 C 0.03 -0.07 5.22 36.00 0.19 0.12 16 12 O -0.25 -0.62 7.68 -49.76 -0.38 -1.00 16 13 C 0.20 0.18 6.67 -39.22 -0.26 -0.08 16 14 C -0.21 0.61 9.04 -39.44 -0.36 0.25 16 15 C -0.03 0.11 8.66 -39.61 -0.34 -0.23 16 16 C -0.16 0.32 5.35 -104.60 -0.56 -0.24 16 17 C -0.08 0.23 2.80 36.01 0.10 0.33 16 18 O -0.53 0.92 12.83 -35.23 -0.45 0.46 16 19 Si 0.95 -3.31 25.13 -169.99 -4.27 -7.58 16 20 H -0.25 0.79 7.11 56.52 0.40 1.19 16 21 H -0.25 0.37 7.11 56.52 0.40 0.77 16 22 H -0.25 0.96 7.04 56.52 0.40 1.36 16 23 C 0.01 0.00 9.18 -39.60 -0.36 -0.36 16 24 C -0.08 -0.21 6.87 -79.81 -0.55 -0.76 16 25 N 0.03 0.19 4.45 34.03 0.15 0.34 16 26 O -0.18 -1.27 18.45 -29.46 -0.54 -1.81 16 27 O -0.12 -1.04 17.24 -36.49 -0.63 -1.67 16 28 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 29 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 30 H 0.07 -0.22 7.79 -51.93 -0.40 -0.63 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 33 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 34 H 0.07 -0.22 7.79 -51.93 -0.40 -0.63 16 35 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 36 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 37 H 0.08 -0.25 7.96 -51.93 -0.41 -0.66 16 38 H 0.08 -0.25 7.96 -51.93 -0.41 -0.66 16 39 H 0.07 -0.34 7.79 -51.93 -0.40 -0.74 16 40 H 0.07 -0.34 7.79 -51.93 -0.40 -0.74 16 41 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 42 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 43 H 0.40 -2.42 8.47 -40.82 -0.35 -2.77 16 44 H 0.10 -0.56 7.66 -51.93 -0.40 -0.96 16 45 H 0.10 -0.56 7.66 -51.93 -0.40 -0.96 16 46 H 0.16 -1.01 6.30 -52.48 -0.33 -1.34 16 47 H 0.14 -0.78 4.86 -52.48 -0.25 -1.04 16 48 H 0.13 -0.45 7.96 -51.93 -0.41 -0.87 16 49 H 0.38 -1.91 8.70 45.56 0.40 -1.51 16 50 H 0.17 0.02 7.61 -52.49 -0.40 -0.38 16 LS Contribution 422.11 15.07 6.36 6.36 Total: 0.00 -12.22 422.11 -9.13 -21.35 By element: Atomic # 1 Polarization: -8.29 SS G_CDS: -7.13 Total: -15.41 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 0.41 Total: 7.42 kcal Atomic # 7 Polarization: 1.90 SS G_CDS: -0.18 Total: 1.72 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -2.24 Total: -7.60 kcal Atomic # 14 Polarization: -7.49 SS G_CDS: -6.34 Total: -13.83 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -12.22 -9.13 -21.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_4549638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.001 kcal (2) G-P(sol) polarization free energy of solvation -12.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds