Wall clock time and date at job start Tue Mar 9 2021 13:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86297 * 109.47511 * 2 1 4 4 C 1.86301 * 109.47231 * 239.99830 * 2 1 3 5 5 C 1.86302 * 109.47198 * 120.00141 * 2 1 3 6 6 C 1.53002 * 109.47258 * 59.99483 * 5 2 1 7 7 C 1.52998 * 109.46842 * 180.02562 * 6 5 2 8 8 N 1.46507 * 109.46826 * 180.02562 * 7 6 5 9 9 C 1.34774 * 119.99975 * 180.02562 * 8 7 6 10 10 O 1.21277 * 119.99884 * 359.97438 * 9 8 7 11 11 C 1.50696 * 119.99994 * 179.97438 * 9 8 7 12 12 O 1.42899 * 109.47561 * 180.02562 * 11 9 8 13 13 C 1.35894 * 117.00434 * 180.02562 * 12 11 9 14 14 C 1.38709 * 120.05744 * 359.97438 * 13 12 11 15 15 C 1.38159 * 119.94698 * 180.02562 * 14 13 12 16 16 C 1.38241 * 120.05581 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.94735 * 179.97438 * 16 15 14 18 18 O 1.42895 * 109.47147 * 245.00352 * 17 16 15 19 19 Si 1.86299 * 109.46748 * 4.99994 * 17 16 15 20 20 H 1.48503 * 109.47188 * 60.00070 * 19 17 16 21 21 H 1.48506 * 109.47139 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47505 * 299.99883 * 19 17 16 23 23 C 1.38293 * 120.11270 * 0.27563 * 16 15 14 24 24 C 1.38126 * 120.05159 * 359.45046 * 23 16 15 25 25 N 1.48002 * 120.02520 * 180.29946 * 24 23 16 26 26 O 1.21798 * 120.00044 * 0.24677 * 25 24 23 27 27 O 1.21801 * 119.99648 * 180.25377 * 25 24 23 28 28 H 1.09006 * 109.46901 * 300.00266 * 1 2 3 29 29 H 1.08995 * 109.47001 * 59.99834 * 1 2 3 30 30 H 1.08994 * 109.47183 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47210 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46892 * 300.00047 * 3 2 1 33 33 H 1.09000 * 109.47295 * 59.99495 * 3 2 1 34 34 H 1.09005 * 109.47194 * 300.00420 * 4 2 1 35 35 H 1.09000 * 109.47243 * 59.99623 * 4 2 1 36 36 H 1.08992 * 109.47382 * 180.02562 * 4 2 1 37 37 H 1.09006 * 109.46862 * 299.99617 * 5 2 1 38 38 H 1.08996 * 109.47615 * 180.02562 * 5 2 1 39 39 H 1.09003 * 109.46573 * 60.00205 * 6 5 2 40 40 H 1.09000 * 109.47137 * 300.00037 * 6 5 2 41 41 H 1.08996 * 109.47743 * 60.00277 * 7 6 5 42 42 H 1.09000 * 109.47092 * 299.99828 * 7 6 5 43 43 H 0.96996 * 119.99778 * 359.97438 * 8 7 6 44 44 H 1.08998 * 109.47376 * 59.99560 * 11 9 8 45 45 H 1.09005 * 109.46967 * 300.00150 * 11 9 8 46 46 H 1.08008 * 120.02343 * 359.97438 * 14 13 12 47 47 H 1.08008 * 119.97393 * 179.97438 * 15 14 13 48 48 H 1.09000 * 109.47318 * 124.99465 * 17 16 15 49 49 H 0.96695 * 114.00385 * 59.99326 * 18 17 16 50 50 H 1.08002 * 119.97160 * 179.70751 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8783 1.5211 6 6 1.9739 -2.3208 1.5212 7 6 2.4835 -3.0417 2.7707 8 7 1.9955 -4.4232 2.7705 9 6 2.3204 -5.2528 3.7818 10 8 3.0170 -4.8558 4.6917 11 6 1.8180 -6.6735 3.7818 12 8 2.2930 -7.3468 4.9494 13 6 1.9280 -8.6467 5.1034 14 6 1.1289 -9.2616 4.1509 15 6 0.7589 -10.5831 4.3101 16 6 1.1848 -11.2928 5.4173 17 6 0.7791 -12.7341 5.5888 18 8 -0.0555 -12.8601 6.7418 19 14 -0.1564 -13.2995 4.0803 20 1 0.7109 -13.1686 2.8820 21 1 -0.5556 -14.7199 4.2489 22 1 -1.3698 -12.4611 3.9071 23 6 1.9773 -10.6807 6.3711 24 6 2.3546 -9.3613 6.2137 25 7 3.2083 -8.7087 7.2315 26 8 3.5820 -9.3364 8.2061 27 8 3.5369 -7.5439 7.0945 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.5741 1.7563 -0.0005 32 1 2.1208 2.2702 -0.8900 33 1 2.1207 2.2703 0.8899 34 1 2.1206 -1.9060 -1.5211 35 1 2.1207 -0.3645 -2.4111 36 1 3.5739 -0.8787 -1.5209 37 1 2.1207 -0.3644 2.4111 38 1 3.5740 -0.8779 1.5214 39 1 2.3373 -2.8346 0.6312 40 1 0.8839 -2.3207 1.5212 41 1 2.1199 -2.5278 3.6605 42 1 3.5735 -3.0418 2.7711 43 1 1.4381 -4.7405 2.0429 44 1 2.1819 -7.1876 2.8922 45 1 0.7280 -6.6735 3.7810 46 1 0.7956 -8.7073 3.2858 47 1 0.1363 -11.0622 3.5688 48 1 1.6697 -13.3496 5.7158 49 1 -0.8683 -12.3382 6.6980 50 1 2.3048 -11.2359 7.2376 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704008_4549638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:08 Heat of formation + Delta-G solvation = -126.491299 kcal Electronic energy + Delta-G solvation = -30625.414341 eV Core-core repulsion = 26166.057627 eV Total energy + Delta-G solvation = -4459.356714 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 370.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.29861 -41.78463 -40.72705 -39.43307 -37.59288 -37.39197 -36.76240 -33.74549 -33.41513 -32.25553 -30.16176 -29.33055 -28.29096 -28.24969 -27.83011 -26.87282 -26.16227 -24.04449 -22.83305 -22.47763 -21.58507 -20.52558 -19.78758 -19.22379 -18.64372 -18.51556 -18.15981 -17.65818 -17.21792 -16.84291 -16.55776 -16.29928 -16.07247 -15.70917 -15.38476 -15.31842 -15.04259 -14.23710 -14.10103 -14.06778 -14.01012 -13.91532 -13.80437 -13.75618 -13.40377 -13.30240 -13.23088 -13.01550 -12.99894 -12.94925 -12.70618 -12.47381 -12.39072 -12.30473 -12.27087 -12.19856 -12.07812 -11.72171 -11.68756 -11.12693 -10.85029 -10.68139 -10.63118 -10.51759 -10.39468 -10.19926 -9.80882 -1.32519 -0.25395 0.14242 0.34449 1.14743 1.22232 1.44632 1.48327 1.55582 1.98625 1.99228 2.02267 2.03603 2.10144 2.37635 2.78544 3.11333 3.22533 3.39258 3.54146 3.61805 3.68618 3.77913 3.90464 3.97901 4.14555 4.16920 4.28864 4.38330 4.39134 4.56655 4.62011 4.70234 4.79943 4.80673 4.83138 4.83864 4.90016 4.91267 4.92661 4.92732 5.06565 5.09189 5.18786 5.29106 5.32340 5.53647 5.62457 5.70454 5.72699 5.74222 6.41882 6.45950 6.68817 7.15759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.091 2.909 3 C -0.478 4.478 4 C -0.465 4.465 5 C -0.425 4.425 6 C -0.116 4.116 7 C 0.117 3.883 8 N -0.708 5.708 9 C 0.503 3.497 10 O -0.571 6.571 11 C 0.025 3.975 12 O -0.292 6.292 13 C 0.192 3.808 14 C -0.189 4.189 15 C -0.018 4.018 16 C -0.150 4.150 17 C -0.087 4.087 18 O -0.555 6.555 19 Si 0.986 3.014 20 H -0.241 1.241 21 H -0.280 1.280 22 H -0.230 1.230 23 C 0.002 3.998 24 C -0.104 4.104 25 N 0.034 4.966 26 O -0.195 6.195 27 O -0.179 6.179 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.423 0.577 44 H 0.144 0.856 45 H 0.144 0.856 46 H 0.204 0.796 47 H 0.178 0.822 48 H 0.125 0.875 49 H 0.392 0.608 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.076 -2.434 -13.289 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.282 2.718 3 C -0.583 4.583 4 C -0.571 4.571 5 C -0.510 4.510 6 C -0.153 4.153 7 C -0.006 4.006 8 N -0.363 5.363 9 C 0.289 3.711 10 O -0.448 6.448 11 C -0.052 4.052 12 O -0.202 6.202 13 C 0.143 3.857 14 C -0.208 4.208 15 C -0.035 4.035 16 C -0.151 4.151 17 C -0.196 4.196 18 O -0.362 6.362 19 Si 0.807 3.193 20 H -0.165 1.165 21 H -0.205 1.205 22 H -0.153 1.153 23 C -0.017 4.017 24 C -0.189 4.189 25 N 0.544 4.456 26 O -0.405 6.405 27 O -0.391 6.391 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.262 0.738 44 H 0.162 0.838 45 H 0.162 0.838 46 H 0.221 0.779 47 H 0.195 0.805 48 H 0.143 0.857 49 H 0.241 0.759 50 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.796 -2.933 -13.496 16.374 hybrid contribution 0.452 0.938 0.904 1.379 sum -8.344 -1.996 -12.592 15.237 Atomic orbital electron populations 1.26329 1.21914 1.04807 1.04072 0.77952 0.65191 0.64096 0.64607 1.26478 1.06226 1.21509 1.04045 1.26331 1.06152 1.08739 1.15905 1.26334 1.06138 1.01766 1.16736 1.21460 1.02354 0.95165 0.96363 1.21547 0.98777 0.80454 0.99856 1.45720 1.53781 1.12075 1.24772 1.20573 0.80445 0.87876 0.82241 1.90846 1.38850 1.77730 1.37416 1.23127 1.03288 0.90167 0.88599 1.86474 1.69318 1.20287 1.44142 1.18960 0.91311 0.83865 0.91609 1.21758 1.01304 0.96906 1.00814 1.21739 0.93411 0.93040 0.95339 1.20472 1.00652 0.98702 0.95292 1.25295 1.00835 0.92776 1.00665 1.86551 1.36762 1.71982 1.40902 0.85198 0.79811 0.79890 0.74391 1.16464 1.20546 1.15277 1.20895 0.91957 0.89276 0.99584 1.20896 1.08693 0.96207 0.93092 1.43894 0.99553 1.00846 1.01281 1.94497 1.58942 1.65113 1.21924 1.94690 1.60519 1.00706 1.83192 0.91672 0.91702 0.90393 0.91714 0.91635 0.91710 0.90398 0.91704 0.91675 0.90703 0.90705 0.89203 0.89203 0.93092 0.93108 0.73821 0.83832 0.83812 0.77938 0.80540 0.85675 0.75890 0.82570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 3.26 8.65 113.37 0.98 4.24 16 2 Si 1.09 -9.65 12.19 68.60 0.84 -8.81 16 3 C -0.48 1.78 8.65 113.37 0.98 2.77 16 4 C -0.46 3.25 8.65 113.37 0.98 4.23 16 5 C -0.43 2.95 4.45 71.98 0.32 3.27 16 6 C -0.12 1.01 4.70 30.59 0.14 1.15 16 7 C 0.12 -0.24 5.67 86.38 0.49 0.25 16 8 N -0.71 3.95 5.56 -463.07 -2.57 1.38 16 9 C 0.50 1.10 7.91 87.66 0.69 1.79 16 10 O -0.57 -9.47 16.50 16.01 0.26 -9.20 16 11 C 0.03 -0.17 5.22 71.23 0.37 0.21 16 12 O -0.29 -1.54 7.68 -63.34 -0.49 -2.03 16 13 C 0.19 0.22 6.67 22.51 0.15 0.37 16 14 C -0.19 1.86 9.04 22.36 0.20 2.06 16 15 C -0.02 0.19 8.66 22.25 0.19 0.38 16 16 C -0.15 0.84 5.35 -19.85 -0.11 0.73 16 17 C -0.09 0.62 2.80 71.24 0.20 0.82 16 18 O -0.55 2.21 12.83 -148.98 -1.91 0.30 16 19 Si 0.99 -9.62 25.13 68.60 1.72 -7.89 16 20 H -0.24 2.50 7.11 99.48 0.71 3.20 16 21 H -0.28 1.05 7.11 99.48 0.71 1.75 16 22 H -0.23 2.88 7.04 99.48 0.70 3.58 16 23 C 0.00 0.00 9.18 22.26 0.20 0.21 16 24 C -0.10 -0.74 6.87 36.48 0.25 -0.49 16 25 N 0.03 0.57 4.45 -46.24 -0.21 0.37 16 26 O -0.20 -3.60 18.45 18.89 0.35 -3.25 16 27 O -0.18 -3.98 17.24 25.61 0.44 -3.54 16 28 H 0.06 -0.38 7.96 -2.38 -0.02 -0.40 16 29 H 0.06 -0.37 7.96 -2.39 -0.02 -0.39 16 30 H 0.08 -0.68 7.79 -2.39 -0.02 -0.70 16 31 H 0.06 -0.19 7.96 -2.39 -0.02 -0.21 16 32 H 0.06 -0.20 7.96 -2.38 -0.02 -0.22 16 33 H 0.06 -0.19 7.96 -2.39 -0.02 -0.21 16 34 H 0.08 -0.68 7.79 -2.38 -0.02 -0.70 16 35 H 0.06 -0.37 7.96 -2.39 -0.02 -0.39 16 36 H 0.06 -0.38 7.96 -2.39 -0.02 -0.39 16 37 H 0.07 -0.42 7.96 -2.38 -0.02 -0.44 16 38 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 39 H 0.09 -1.07 7.79 -2.39 -0.02 -1.09 16 40 H 0.09 -1.07 7.79 -2.39 -0.02 -1.09 16 41 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 43 H 0.42 -6.36 8.47 -92.71 -0.79 -7.14 16 44 H 0.14 -2.22 7.66 -2.39 -0.02 -2.24 16 45 H 0.14 -2.23 7.66 -2.38 -0.02 -2.25 16 46 H 0.20 -4.01 6.30 -2.91 -0.02 -4.02 16 47 H 0.18 -3.00 4.86 -2.91 -0.01 -3.01 16 48 H 0.13 -0.95 7.96 -2.39 -0.02 -0.96 16 49 H 0.39 -4.39 8.70 -74.06 -0.64 -5.04 16 50 H 0.16 0.41 7.61 -2.91 -0.02 0.39 16 Total: 0.00 -37.73 422.11 4.78 -32.95 By element: Atomic # 1 Polarization: -22.54 SS G_CDS: 0.29 Total: -22.25 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: 6.05 Total: 21.99 kcal Atomic # 7 Polarization: 4.53 SS G_CDS: -2.78 Total: 1.75 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -1.34 Total: -17.73 kcal Atomic # 14 Polarization: -19.27 SS G_CDS: 2.56 Total: -16.71 kcal Total: -37.73 4.78 -32.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_4549638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.545 kcal (2) G-P(sol) polarization free energy of solvation -37.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds