Wall clock time and date at job start Tue Mar 9 2021 13:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86297 * 109.47325 * 2 1 4 4 C 1.86307 * 109.47190 * 239.99569 * 2 1 3 5 5 C 1.86302 * 109.47104 * 120.00185 * 2 1 3 6 6 C 1.53000 * 109.47339 * 59.99512 * 5 2 1 7 7 C 1.53003 * 109.46990 * 179.97438 * 6 5 2 8 8 N 1.46499 * 109.46708 * 180.02562 * 7 6 5 9 9 C 1.34784 * 119.99893 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99649 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99774 * 179.72962 * 9 8 7 12 12 O 1.42905 * 109.47007 * 179.97438 * 11 9 8 13 13 C 1.35894 * 117.00317 * 179.97438 * 12 11 9 14 14 C 1.38711 * 120.05265 * 359.72319 * 13 12 11 15 15 C 1.38169 * 119.94107 * 179.72136 * 14 13 12 16 16 C 1.38245 * 120.05776 * 0.57882 * 15 14 13 17 17 C 1.38292 * 120.10793 * 359.67480 * 16 15 14 18 18 C 1.50700 * 119.96783 * 180.02562 * 17 16 15 19 19 O 1.42901 * 109.46778 * 245.02301 * 18 17 16 20 20 Si 1.86294 * 109.47580 * 5.02409 * 18 17 16 21 21 H 1.48497 * 109.47014 * 59.99678 * 20 18 17 22 22 H 1.48496 * 109.47357 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47138 * 300.00130 * 20 18 17 24 24 C 1.38127 * 120.05577 * 0.04783 * 17 16 15 25 25 H 1.09000 * 109.47096 * 299.99831 * 1 2 3 26 26 H 1.08995 * 109.46986 * 60.00007 * 1 2 3 27 27 H 1.08998 * 109.47393 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47036 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47083 * 299.99934 * 3 2 1 30 30 H 1.09000 * 109.46896 * 60.00046 * 3 2 1 31 31 H 1.08998 * 109.47083 * 300.00349 * 4 2 1 32 32 H 1.09005 * 109.46768 * 60.00399 * 4 2 1 33 33 H 1.08999 * 109.46743 * 179.97438 * 4 2 1 34 34 H 1.09005 * 109.47130 * 299.99484 * 5 2 1 35 35 H 1.08999 * 109.47295 * 180.02562 * 5 2 1 36 36 H 1.09000 * 109.46641 * 60.00150 * 6 5 2 37 37 H 1.08994 * 109.47288 * 300.00451 * 6 5 2 38 38 H 1.08998 * 109.46692 * 60.00542 * 7 6 5 39 39 H 1.08994 * 109.47584 * 300.00406 * 7 6 5 40 40 H 0.97005 * 120.00261 * 0.02562 * 8 7 6 41 41 H 1.09001 * 109.46809 * 299.99238 * 11 9 8 42 42 H 1.08993 * 109.47525 * 59.99679 * 11 9 8 43 43 H 1.08003 * 120.03224 * 0.02562 * 14 13 12 44 44 H 1.08009 * 119.97201 * 180.27523 * 15 14 13 45 45 H 1.07999 * 119.94829 * 179.70019 * 16 15 14 46 46 H 1.08994 * 109.46685 * 125.02938 * 18 17 16 47 47 H 0.96694 * 114.00144 * 60.00374 * 19 18 17 48 48 H 1.07995 * 120.02340 * 179.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8784 -1.5211 5 6 2.4839 -0.8783 1.5211 6 6 1.9739 -2.3208 1.5212 7 6 2.4844 -3.0422 2.7701 8 7 1.9965 -4.4235 2.7698 9 6 2.3222 -5.2535 3.7806 10 8 3.0188 -4.8565 4.6906 11 6 1.8152 -6.6726 3.7834 12 8 2.2931 -7.3469 4.9493 13 6 1.9238 -8.6452 5.1060 14 6 1.1135 -9.2560 4.1603 15 6 0.7441 -10.5779 4.3190 16 6 1.1716 -11.2883 5.4253 17 6 1.9752 -10.6800 6.3722 18 6 2.4399 -11.4575 7.5767 19 8 1.8736 -10.8880 8.7586 20 14 1.8940 -13.2317 7.4192 21 1 2.4824 -13.8234 6.1908 22 1 2.3524 -13.9979 8.6057 23 1 0.4125 -13.2881 7.3350 24 6 2.3519 -9.3604 6.2152 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.5740 1.7563 -0.0005 29 1 2.1207 2.2702 -0.8900 30 1 2.1207 2.2702 0.8900 31 1 2.1206 -1.9060 -1.5211 32 1 2.1207 -0.3645 -2.4111 33 1 3.5740 -0.8779 -1.5213 34 1 2.1207 -0.3644 2.4112 35 1 3.5739 -0.8779 1.5214 36 1 2.3372 -2.8346 0.6312 37 1 0.8839 -2.3207 1.5212 38 1 2.1214 -2.5284 3.6603 39 1 3.5744 -3.0422 2.7697 40 1 1.4390 -4.7409 2.0422 41 1 0.7252 -6.6690 3.7865 42 1 2.1744 -7.1885 2.8930 43 1 0.7756 -8.7003 3.2981 44 1 0.1169 -11.0553 3.5806 45 1 0.8779 -12.3200 5.5501 46 1 3.5273 -11.4160 7.6384 47 1 0.9068 -10.8914 8.7725 48 1 2.9792 -8.8858 6.9552 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9704008_4860298.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:29 Heat of formation + Delta-G solvation = -133.872935 kcal Electronic energy + Delta-G solvation = -24215.902938 eV Core-core repulsion = 20587.242568 eV Total energy + Delta-G solvation = -3628.660370 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.167 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.51561 -40.51595 -38.96155 -37.25206 -36.74416 -33.75380 -32.49101 -31.67815 -29.81501 -29.38547 -28.50495 -28.49575 -26.96387 -26.28609 -23.71040 -22.72964 -22.50500 -21.37241 -19.32149 -18.49508 -17.86384 -17.54721 -17.26014 -17.01373 -16.59723 -16.54984 -16.14121 -15.57541 -15.24822 -14.98842 -14.96953 -14.48675 -14.34934 -14.27201 -14.16179 -14.01382 -13.94936 -13.71547 -13.47659 -13.38314 -13.19977 -13.18114 -13.16314 -13.01876 -12.69417 -12.56767 -12.23256 -12.12160 -11.96236 -11.93158 -11.54579 -11.00173 -10.87883 -10.87590 -10.58865 -10.46202 -10.17921 -9.93880 -9.27266 0.18916 0.39040 1.12531 1.43192 1.44892 1.51152 1.52404 1.72930 1.79741 1.80524 1.91396 2.52924 2.60895 2.65746 3.45142 3.50013 3.64118 3.75348 3.86687 3.87193 3.94384 3.98689 3.99933 4.15794 4.17178 4.36338 4.53870 4.56967 4.59424 4.63996 4.65199 4.66814 4.68213 4.70111 4.70190 4.70615 4.90090 4.96125 5.05363 5.21559 5.22952 5.33064 5.33571 5.41885 5.42718 5.47279 5.48553 5.63876 6.24317 6.39014 6.55630 7.10805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.012 2.988 3 C -0.453 4.453 4 C -0.451 4.451 5 C -0.412 4.412 6 C -0.121 4.121 7 C 0.120 3.880 8 N -0.730 5.730 9 C 0.513 3.487 10 O -0.512 6.512 11 C 0.041 3.959 12 O -0.288 6.288 13 C 0.129 3.871 14 C -0.206 4.206 15 C -0.072 4.072 16 C -0.163 4.163 17 C -0.080 4.080 18 C -0.083 4.083 19 O -0.536 6.536 20 Si 0.956 3.044 21 H -0.250 1.250 22 H -0.254 1.254 23 H -0.252 1.252 24 C -0.117 4.117 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.402 0.598 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.123 0.877 46 H 0.120 0.880 47 H 0.377 0.623 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 -0.256 -5.932 7.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.208 2.792 3 C -0.560 4.560 4 C -0.559 4.559 5 C -0.498 4.498 6 C -0.158 4.158 7 C -0.003 4.003 8 N -0.384 5.384 9 C 0.298 3.702 10 O -0.386 6.386 11 C -0.038 4.038 12 O -0.200 6.200 13 C 0.084 3.916 14 C -0.225 4.225 15 C -0.090 4.090 16 C -0.181 4.181 17 C -0.081 4.081 18 C -0.194 4.194 19 O -0.341 6.341 20 Si 0.778 3.222 21 H -0.174 1.174 22 H -0.178 1.178 23 H -0.176 1.176 24 C -0.136 4.136 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.236 0.764 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.141 0.859 46 H 0.138 0.862 47 H 0.224 0.776 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.723 -0.621 -5.026 5.749 hybrid contribution -0.857 0.284 -0.839 1.232 sum -3.579 -0.337 -5.865 6.879 Atomic orbital electron populations 1.26169 1.20930 1.04313 1.04450 0.79159 0.66903 0.66782 0.66319 1.26145 1.06299 1.19108 1.04450 1.26171 1.06281 1.07950 1.15457 1.26150 1.06246 1.01190 1.16191 1.21427 1.01340 0.95802 0.97279 1.21557 0.99724 0.79896 0.99143 1.45887 1.54528 1.12794 1.25190 1.20039 0.81057 0.86613 0.82517 1.90794 1.36224 1.76575 1.35014 1.22472 1.00418 0.91589 0.89358 1.86177 1.70151 1.21716 1.41969 1.19056 0.94525 0.83164 0.94874 1.21294 1.03348 0.97054 1.00817 1.20883 0.97877 0.93302 0.96960 1.20991 1.00959 1.00242 0.95901 1.20126 0.97242 0.94171 0.96515 1.25059 1.03086 1.07166 0.84052 1.86541 1.25413 1.84375 1.37760 0.85599 0.80763 0.74718 0.81078 1.17367 1.17786 1.17554 1.20278 1.03026 0.93326 0.96981 0.91269 0.91298 0.91348 0.91255 0.91268 0.91251 0.91346 0.91303 0.91269 0.90201 0.90200 0.90987 0.90977 0.91188 0.91198 0.76394 0.88757 0.88779 0.85229 0.85190 0.85934 0.86186 0.77614 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.19 8.65 101.05 0.87 2.07 16 2 Si 1.01 -3.89 12.19 -169.99 -2.07 -5.97 16 3 C -0.45 0.92 8.65 101.05 0.87 1.79 16 4 C -0.45 1.19 8.65 101.05 0.87 2.07 16 5 C -0.41 1.28 4.45 37.16 0.17 1.45 16 6 C -0.12 0.40 4.70 -26.73 -0.13 0.27 16 7 C 0.12 -0.10 5.67 -4.04 -0.02 -0.12 16 8 N -0.73 1.04 5.56 -60.30 -0.33 0.71 16 9 C 0.51 0.97 7.91 -10.98 -0.09 0.89 16 10 O -0.51 -3.68 16.50 -14.35 -0.24 -3.92 16 11 C 0.04 -0.02 5.22 36.00 0.19 0.16 16 12 O -0.29 -0.97 9.67 -39.31 -0.38 -1.35 16 13 C 0.13 0.29 6.69 -39.22 -0.26 0.03 16 14 C -0.21 0.00 9.04 -39.43 -0.36 -0.35 16 15 C -0.07 0.02 10.04 -39.60 -0.40 -0.37 16 16 C -0.16 -0.05 8.67 -39.56 -0.34 -0.39 16 17 C -0.08 -0.09 5.35 -104.64 -0.56 -0.65 16 18 C -0.08 -0.01 2.80 36.01 0.10 0.09 16 19 O -0.54 -0.52 12.83 -35.23 -0.45 -0.97 16 20 Si 0.96 -0.50 25.14 -169.99 -4.27 -4.78 16 21 H -0.25 0.00 7.11 56.52 0.40 0.40 16 22 H -0.25 -0.24 7.11 56.52 0.40 0.16 16 23 H -0.25 0.14 7.04 56.52 0.40 0.54 16 24 C -0.12 -0.29 9.62 -39.43 -0.38 -0.67 16 25 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 26 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 27 H 0.07 -0.20 7.79 -51.93 -0.40 -0.61 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 31 H 0.07 -0.20 7.79 -51.93 -0.40 -0.61 16 32 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 33 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 34 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 35 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 36 H 0.07 -0.30 7.79 -51.93 -0.40 -0.71 16 37 H 0.07 -0.30 7.79 -51.93 -0.40 -0.71 16 38 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 39 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 40 H 0.40 -1.97 8.47 -40.82 -0.35 -2.32 16 41 H 0.09 -0.30 7.65 -51.93 -0.40 -0.70 16 42 H 0.09 -0.30 7.67 -51.93 -0.40 -0.70 16 43 H 0.13 -0.35 6.30 -52.48 -0.33 -0.69 16 44 H 0.13 -0.34 8.06 -52.48 -0.42 -0.77 16 45 H 0.12 -0.13 4.86 -52.49 -0.25 -0.38 16 46 H 0.12 -0.07 7.96 -51.93 -0.41 -0.48 16 47 H 0.38 -0.88 8.70 45.56 0.40 -0.48 16 48 H 0.14 0.40 8.06 -52.49 -0.42 -0.03 16 LS Contribution 396.10 15.07 5.97 5.97 Total: 0.00 -9.26 396.10 -8.81 -18.07 By element: Atomic # 1 Polarization: -6.45 SS G_CDS: -7.57 Total: -14.02 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 0.54 Total: 6.26 kcal Atomic # 7 Polarization: 1.04 SS G_CDS: -0.33 Total: 0.71 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -1.07 Total: -6.24 kcal Atomic # 14 Polarization: -4.40 SS G_CDS: -6.35 Total: -10.74 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -9.26 -8.81 -18.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_4860298.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.804 kcal (2) G-P(sol) polarization free energy of solvation -9.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds