Wall clock time and date at job start Tue Mar 9 2021 13:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86297 * 109.47325 * 2 1 4 4 C 1.86307 * 109.47190 * 239.99569 * 2 1 3 5 5 C 1.86302 * 109.47104 * 120.00185 * 2 1 3 6 6 C 1.53000 * 109.47339 * 59.99512 * 5 2 1 7 7 C 1.53003 * 109.46990 * 179.97438 * 6 5 2 8 8 N 1.46499 * 109.46708 * 180.02562 * 7 6 5 9 9 C 1.34784 * 119.99893 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99649 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99774 * 179.72962 * 9 8 7 12 12 O 1.42905 * 109.47007 * 179.97438 * 11 9 8 13 13 C 1.35894 * 117.00317 * 179.97438 * 12 11 9 14 14 C 1.38711 * 120.05265 * 359.72319 * 13 12 11 15 15 C 1.38169 * 119.94107 * 179.72136 * 14 13 12 16 16 C 1.38245 * 120.05776 * 0.57882 * 15 14 13 17 17 C 1.38292 * 120.10793 * 359.67480 * 16 15 14 18 18 C 1.50700 * 119.96783 * 180.02562 * 17 16 15 19 19 O 1.42901 * 109.46778 * 245.02301 * 18 17 16 20 20 Si 1.86294 * 109.47580 * 5.02409 * 18 17 16 21 21 H 1.48497 * 109.47014 * 59.99678 * 20 18 17 22 22 H 1.48496 * 109.47357 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47138 * 300.00130 * 20 18 17 24 24 C 1.38127 * 120.05577 * 0.04783 * 17 16 15 25 25 H 1.09000 * 109.47096 * 299.99831 * 1 2 3 26 26 H 1.08995 * 109.46986 * 60.00007 * 1 2 3 27 27 H 1.08998 * 109.47393 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47036 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47083 * 299.99934 * 3 2 1 30 30 H 1.09000 * 109.46896 * 60.00046 * 3 2 1 31 31 H 1.08998 * 109.47083 * 300.00349 * 4 2 1 32 32 H 1.09005 * 109.46768 * 60.00399 * 4 2 1 33 33 H 1.08999 * 109.46743 * 179.97438 * 4 2 1 34 34 H 1.09005 * 109.47130 * 299.99484 * 5 2 1 35 35 H 1.08999 * 109.47295 * 180.02562 * 5 2 1 36 36 H 1.09000 * 109.46641 * 60.00150 * 6 5 2 37 37 H 1.08994 * 109.47288 * 300.00451 * 6 5 2 38 38 H 1.08998 * 109.46692 * 60.00542 * 7 6 5 39 39 H 1.08994 * 109.47584 * 300.00406 * 7 6 5 40 40 H 0.97005 * 120.00261 * 0.02562 * 8 7 6 41 41 H 1.09001 * 109.46809 * 299.99238 * 11 9 8 42 42 H 1.08993 * 109.47525 * 59.99679 * 11 9 8 43 43 H 1.08003 * 120.03224 * 0.02562 * 14 13 12 44 44 H 1.08009 * 119.97201 * 180.27523 * 15 14 13 45 45 H 1.07999 * 119.94829 * 179.70019 * 16 15 14 46 46 H 1.08994 * 109.46685 * 125.02938 * 18 17 16 47 47 H 0.96694 * 114.00144 * 60.00374 * 19 18 17 48 48 H 1.07995 * 120.02340 * 179.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8784 -1.5211 5 6 2.4839 -0.8783 1.5211 6 6 1.9739 -2.3208 1.5212 7 6 2.4844 -3.0422 2.7701 8 7 1.9965 -4.4235 2.7698 9 6 2.3222 -5.2535 3.7806 10 8 3.0188 -4.8565 4.6906 11 6 1.8152 -6.6726 3.7834 12 8 2.2931 -7.3469 4.9493 13 6 1.9238 -8.6452 5.1060 14 6 1.1135 -9.2560 4.1603 15 6 0.7441 -10.5779 4.3190 16 6 1.1716 -11.2883 5.4253 17 6 1.9752 -10.6800 6.3722 18 6 2.4399 -11.4575 7.5767 19 8 1.8736 -10.8880 8.7586 20 14 1.8940 -13.2317 7.4192 21 1 2.4824 -13.8234 6.1908 22 1 2.3524 -13.9979 8.6057 23 1 0.4125 -13.2881 7.3350 24 6 2.3519 -9.3604 6.2152 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.5740 1.7563 -0.0005 29 1 2.1207 2.2702 -0.8900 30 1 2.1207 2.2702 0.8900 31 1 2.1206 -1.9060 -1.5211 32 1 2.1207 -0.3645 -2.4111 33 1 3.5740 -0.8779 -1.5213 34 1 2.1207 -0.3644 2.4112 35 1 3.5739 -0.8779 1.5214 36 1 2.3372 -2.8346 0.6312 37 1 0.8839 -2.3207 1.5212 38 1 2.1214 -2.5284 3.6603 39 1 3.5744 -3.0422 2.7697 40 1 1.4390 -4.7409 2.0422 41 1 0.7252 -6.6690 3.7865 42 1 2.1744 -7.1885 2.8930 43 1 0.7756 -8.7003 3.2981 44 1 0.1169 -11.0553 3.5806 45 1 0.8779 -12.3200 5.5501 46 1 3.5273 -11.4160 7.6384 47 1 0.9068 -10.8914 8.7725 48 1 2.9792 -8.8858 6.9552 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704008_4860298.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:28 Heat of formation + Delta-G solvation = -131.157219 kcal Electronic energy + Delta-G solvation = -24215.785176 eV Core-core repulsion = 20587.242568 eV Total energy + Delta-G solvation = -3628.542608 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.167 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.56201 -40.60116 -39.00567 -37.26640 -36.77228 -33.69264 -32.48103 -31.66973 -29.72091 -29.24465 -28.29361 -28.25678 -26.93925 -26.20999 -23.71342 -22.62653 -22.47755 -21.39376 -19.32866 -18.51666 -17.87852 -17.54878 -17.28940 -17.05378 -16.53485 -16.49276 -16.13946 -15.59428 -15.28887 -14.98388 -14.95761 -14.42551 -14.22335 -14.07084 -14.01771 -14.00074 -13.76945 -13.59682 -13.33552 -13.29699 -13.03944 -13.01757 -12.96933 -12.95525 -12.60369 -12.48621 -12.18970 -12.07036 -11.96066 -11.70475 -11.54475 -11.12402 -10.68574 -10.63815 -10.46844 -10.40150 -10.22675 -9.93996 -9.30359 0.19359 0.36623 1.15218 1.41221 1.47840 1.48827 1.55016 1.92432 1.99563 2.04238 2.09084 2.61141 2.65451 2.78382 3.50855 3.55794 3.69105 3.84251 3.98774 4.04611 4.08207 4.13602 4.14963 4.21137 4.36271 4.37745 4.55013 4.66514 4.68846 4.78254 4.83130 4.83237 4.89305 4.90437 4.91765 4.91920 4.97322 5.07568 5.22394 5.27522 5.29906 5.34028 5.42423 5.52596 5.62016 5.67293 5.70021 5.71936 6.26474 6.46224 6.68528 7.10911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.090 2.910 3 C -0.476 4.476 4 C -0.465 4.465 5 C -0.424 4.424 6 C -0.117 4.117 7 C 0.117 3.883 8 N -0.710 5.710 9 C 0.507 3.493 10 O -0.578 6.578 11 C 0.038 3.962 12 O -0.323 6.323 13 C 0.114 3.886 14 C -0.202 4.202 15 C -0.071 4.071 16 C -0.171 4.171 17 C -0.084 4.084 18 C -0.091 4.091 19 O -0.555 6.555 20 Si 0.997 3.003 21 H -0.253 1.253 22 H -0.278 1.278 23 H -0.245 1.245 24 C -0.145 4.145 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.422 0.578 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.137 0.863 46 H 0.118 0.882 47 H 0.389 0.611 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.567 -1.414 -8.089 9.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.280 2.720 3 C -0.581 4.581 4 C -0.572 4.572 5 C -0.509 4.509 6 C -0.155 4.155 7 C -0.007 4.007 8 N -0.364 5.364 9 C 0.294 3.706 10 O -0.457 6.457 11 C -0.039 4.039 12 O -0.236 6.236 13 C 0.069 3.931 14 C -0.221 4.221 15 C -0.089 4.089 16 C -0.189 4.189 17 C -0.084 4.084 18 C -0.200 4.200 19 O -0.362 6.362 20 Si 0.820 3.180 21 H -0.177 1.177 22 H -0.203 1.203 23 H -0.168 1.168 24 C -0.164 4.164 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.260 0.740 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.179 0.821 44 H 0.177 0.823 45 H 0.155 0.845 46 H 0.136 0.864 47 H 0.238 0.762 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.582 -1.755 -7.239 8.745 hybrid contribution -0.279 0.706 -0.181 0.780 sum -4.860 -1.049 -7.420 8.932 Atomic orbital electron populations 1.26337 1.21996 1.04742 1.04102 0.77971 0.65165 0.64228 0.64602 1.26451 1.06252 1.21305 1.04093 1.26339 1.06183 1.08683 1.15971 1.26326 1.06184 1.01585 1.16779 1.21466 1.02322 0.95298 0.96368 1.21569 0.98838 0.80334 0.99920 1.45773 1.53634 1.12184 1.24837 1.20641 0.80095 0.87875 0.82028 1.90764 1.39397 1.77933 1.37631 1.22738 1.02134 0.89721 0.89345 1.86129 1.71112 1.22501 1.43898 1.19224 0.95441 0.82960 0.95498 1.21621 1.02130 0.97379 1.00934 1.21293 0.97420 0.93163 0.97033 1.21244 1.00631 1.01020 0.95961 1.20214 0.97469 0.93668 0.97076 1.25260 1.03191 1.08006 0.83587 1.86500 1.26734 1.84683 1.38287 0.85014 0.80679 0.72747 0.79556 1.17714 1.20348 1.16798 1.20320 1.04167 0.94363 0.97548 0.91619 0.91679 0.90538 0.91640 0.91608 0.91636 0.90537 0.91684 0.91621 0.90592 0.90592 0.89329 0.89315 0.92924 0.92932 0.73957 0.85584 0.85594 0.82096 0.82252 0.84536 0.86428 0.76173 0.86476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.90 8.65 113.37 0.98 3.88 16 2 Si 1.09 -9.00 12.19 68.60 0.84 -8.16 16 3 C -0.48 1.70 8.65 113.37 0.98 2.68 16 4 C -0.47 2.90 8.65 113.37 0.98 3.88 16 5 C -0.42 2.72 4.45 71.98 0.32 3.04 16 6 C -0.12 0.88 4.70 30.60 0.14 1.03 16 7 C 0.12 -0.12 5.67 86.38 0.49 0.37 16 8 N -0.71 2.36 5.56 -463.06 -2.57 -0.22 16 9 C 0.51 2.24 7.91 87.65 0.69 2.93 16 10 O -0.58 -9.82 16.50 16.00 0.26 -9.56 16 11 C 0.04 -0.08 5.22 71.24 0.37 0.29 16 12 O -0.32 -2.53 9.67 -73.32 -0.71 -3.24 16 13 C 0.11 0.57 6.69 22.51 0.15 0.72 16 14 C -0.20 0.37 9.04 22.37 0.20 0.57 16 15 C -0.07 0.21 10.04 22.25 0.22 0.43 16 16 C -0.17 0.06 8.67 22.28 0.19 0.26 16 17 C -0.08 -0.25 5.35 -19.88 -0.11 -0.35 16 18 C -0.09 -0.12 2.80 71.24 0.20 0.08 16 19 O -0.55 -1.87 12.83 -148.98 -1.91 -3.79 16 20 Si 1.00 -1.18 25.14 68.60 1.72 0.54 16 21 H -0.25 0.19 7.11 99.48 0.71 0.90 16 22 H -0.28 -0.74 7.11 99.48 0.71 -0.03 16 23 H -0.24 0.60 7.04 99.48 0.70 1.30 16 24 C -0.15 -1.00 9.62 22.37 0.22 -0.79 16 25 H 0.06 -0.34 7.96 -2.39 -0.02 -0.36 16 26 H 0.06 -0.33 7.96 -2.39 -0.02 -0.35 16 27 H 0.08 -0.59 7.79 -2.39 -0.02 -0.61 16 28 H 0.06 -0.19 7.96 -2.39 -0.02 -0.21 16 29 H 0.06 -0.19 7.96 -2.39 -0.02 -0.21 16 30 H 0.06 -0.19 7.96 -2.39 -0.02 -0.21 16 31 H 0.08 -0.59 7.79 -2.39 -0.02 -0.60 16 32 H 0.06 -0.33 7.96 -2.38 -0.02 -0.35 16 33 H 0.06 -0.34 7.96 -2.39 -0.02 -0.36 16 34 H 0.08 -0.41 7.96 -2.38 -0.02 -0.43 16 35 H 0.08 -0.41 7.96 -2.39 -0.02 -0.43 16 36 H 0.09 -0.93 7.79 -2.39 -0.02 -0.95 16 37 H 0.09 -0.93 7.79 -2.39 -0.02 -0.95 16 38 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.42 -5.03 8.47 -92.70 -0.79 -5.81 16 41 H 0.13 -1.10 7.65 -2.39 -0.02 -1.12 16 42 H 0.13 -1.11 7.67 -2.39 -0.02 -1.12 16 43 H 0.16 -1.46 6.30 -2.91 -0.02 -1.47 16 44 H 0.16 -1.43 8.06 -2.91 -0.02 -1.45 16 45 H 0.14 -0.51 4.86 -2.91 -0.01 -0.52 16 46 H 0.12 0.10 7.96 -2.39 -0.02 0.08 16 47 H 0.39 -1.42 8.70 -74.06 -0.64 -2.07 16 48 H 0.12 1.13 8.06 -2.91 -0.02 1.11 16 Total: 0.00 -25.32 396.10 3.94 -21.38 By element: Atomic # 1 Polarization: -16.24 SS G_CDS: 0.26 Total: -15.98 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 6.04 Total: 19.02 kcal Atomic # 7 Polarization: 2.36 SS G_CDS: -2.57 Total: -0.22 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -2.36 Total: -16.59 kcal Atomic # 14 Polarization: -10.18 SS G_CDS: 2.56 Total: -7.62 kcal Total: -25.32 3.94 -21.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_4860298.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.777 kcal (2) G-P(sol) polarization free energy of solvation -25.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds