Wall clock time and date at job start Tue Mar 9 2021 13:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86306 * 109.47114 * 2 1 4 4 C 1.86296 * 109.47186 * 239.99904 * 2 1 3 5 5 C 1.86294 * 109.47062 * 119.99825 * 2 1 3 6 6 C 1.52998 * 109.47138 * 59.99856 * 5 2 1 7 7 C 1.53005 * 109.47204 * 179.97438 * 6 5 2 8 8 N 1.46501 * 109.46985 * 180.02562 * 7 6 5 9 9 C 1.34774 * 120.00005 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99778 * 0.02562 * 9 8 7 11 11 C 1.50704 * 120.00211 * 180.02562 * 9 8 7 12 12 O 1.42900 * 109.46992 * 180.02562 * 11 9 8 13 13 C 1.35914 * 116.99871 * 180.02562 * 12 11 9 14 14 C 1.38678 * 120.06015 * 359.97438 * 13 12 11 15 15 C 1.38181 * 119.95680 * 179.97438 * 14 13 12 16 16 C 1.38241 * 120.07059 * 0.03195 * 15 14 13 17 17 C 1.50706 * 119.93825 * 179.97438 * 16 15 14 18 18 O 1.42895 * 109.46938 * 299.99525 * 17 16 15 19 19 Si 1.86299 * 109.46748 * 179.97438 * 17 16 15 20 20 H 1.48505 * 109.47505 * 299.99883 * 19 17 16 21 21 H 1.48503 * 109.47188 * 60.00070 * 19 17 16 22 22 H 1.48506 * 109.47139 * 179.97438 * 19 17 16 23 23 C 1.38279 * 120.12009 * 0.24319 * 16 15 14 24 24 C 1.38197 * 120.04539 * 359.46139 * 23 16 15 25 25 Br 1.89099 * 120.04178 * 180.25362 * 24 23 16 26 26 H 1.09002 * 109.46835 * 300.00378 * 1 2 3 27 27 H 1.09002 * 109.46983 * 60.00090 * 1 2 3 28 28 H 1.08999 * 109.47255 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46984 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46657 * 299.99827 * 3 2 1 31 31 H 1.08994 * 109.47088 * 59.99665 * 3 2 1 32 32 H 1.08999 * 109.47191 * 300.00244 * 4 2 1 33 33 H 1.09002 * 109.47155 * 60.00111 * 4 2 1 34 34 H 1.08993 * 109.47344 * 179.97438 * 4 2 1 35 35 H 1.08999 * 109.47438 * 300.00045 * 5 2 1 36 36 H 1.08998 * 109.47276 * 180.02562 * 5 2 1 37 37 H 1.09002 * 109.47305 * 59.99868 * 6 5 2 38 38 H 1.08998 * 109.47270 * 300.00289 * 6 5 2 39 39 H 1.08994 * 109.46953 * 60.00429 * 7 6 5 40 40 H 1.09001 * 109.46746 * 299.99832 * 7 6 5 41 41 H 0.97000 * 120.00017 * 0.02562 * 8 7 6 42 42 H 1.08994 * 109.46996 * 60.00301 * 11 9 8 43 43 H 1.09001 * 109.46965 * 299.99543 * 11 9 8 44 44 H 1.07999 * 120.02210 * 359.96235 * 14 13 12 45 45 H 1.07999 * 119.96701 * 180.02562 * 15 14 13 46 46 H 1.09000 * 109.47161 * 59.99791 * 17 16 15 47 47 H 0.96709 * 113.99981 * 180.02562 * 18 17 16 48 48 H 1.07998 * 119.98018 * 179.72434 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4840 -0.8782 1.5211 6 6 1.9740 -2.3206 1.5212 7 6 2.4845 -3.0421 2.7702 8 7 1.9966 -4.4234 2.7699 9 6 2.3231 -5.2536 3.7801 10 8 3.0205 -4.8569 4.6897 11 6 1.8217 -6.6748 3.7795 12 8 2.2984 -7.3485 4.9461 13 6 1.9346 -8.6490 5.0996 14 6 1.1350 -9.2636 4.1476 15 6 0.7668 -10.5861 4.3055 16 6 1.1940 -11.2968 5.4116 17 6 0.7901 -12.7388 5.5811 18 8 -0.6347 -12.8305 5.6401 19 14 1.5219 -13.4072 7.1586 20 1 3.0026 -13.3118 7.0969 21 1 1.0224 -12.6145 8.3108 22 1 1.1234 -14.8280 7.3260 23 6 1.9866 -10.6853 6.3656 24 6 2.3629 -9.3647 6.2095 25 35 3.4527 -8.5308 7.5105 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.5741 1.7565 -0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1207 2.2703 0.8899 32 1 2.1207 -1.9059 -1.5211 33 1 2.1207 -0.3644 -2.4111 34 1 3.5740 -0.8778 -1.5213 35 1 2.1207 -0.3643 2.4111 36 1 3.5740 -0.8778 1.5214 37 1 2.3373 -2.8345 0.6312 38 1 0.8840 -2.3206 1.5211 39 1 2.1215 -2.5284 3.6603 40 1 3.5745 -3.0421 2.7696 41 1 1.4392 -4.7408 2.0422 42 1 2.1851 -7.1879 2.8892 43 1 0.7317 -6.6755 3.7800 44 1 0.8002 -8.7090 3.2835 45 1 0.1445 -11.0650 3.5641 46 1 1.1571 -13.3207 4.7356 47 1 -0.9666 -13.7323 5.7492 48 1 2.3154 -11.2414 7.2311 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704008_6201210.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:18:40 Heat of formation + Delta-G solvation = -122.966280 kcal Electronic energy + Delta-G solvation = -26264.695876 eV Core-core repulsion = 22296.690451 eV Total energy + Delta-G solvation = -3968.005425 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 403.077 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.66994 -40.62711 -39.06586 -37.29460 -36.74966 -33.72962 -33.47099 -32.24145 -30.58860 -29.80525 -29.29539 -28.28997 -28.24994 -26.73300 -26.01305 -23.99077 -22.48688 -22.27793 -21.50046 -19.56770 -18.59928 -18.27830 -17.58176 -17.24630 -16.99771 -16.64225 -16.49911 -16.24498 -15.54629 -15.36360 -15.07686 -14.64437 -14.52734 -14.19798 -14.12732 -14.05686 -13.95353 -13.87315 -13.76164 -13.74275 -13.40251 -13.28732 -13.01386 -13.00343 -12.95003 -12.51982 -12.47664 -12.30423 -12.20153 -12.08513 -11.87585 -11.75669 -11.69100 -11.26044 -11.09903 -10.68015 -10.63185 -10.39497 -10.32945 -10.19437 -10.01459 -9.30236 -0.04795 0.07047 0.58835 1.14968 1.39435 1.43061 1.45306 1.46213 1.90015 1.99596 2.04313 2.09729 2.38006 2.54208 2.78777 3.35839 3.51030 3.67878 3.84097 3.85256 4.04563 4.05557 4.06735 4.15011 4.17017 4.32746 4.38499 4.41166 4.66637 4.70071 4.78947 4.79605 4.83412 4.83815 4.89903 4.91138 4.92554 4.92714 5.04088 5.08974 5.28747 5.30568 5.32253 5.46189 5.53528 5.62504 5.70597 5.72640 6.05610 6.46813 6.84305 7.14673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.089 2.911 3 C -0.476 4.476 4 C -0.465 4.465 5 C -0.424 4.424 6 C -0.117 4.117 7 C 0.118 3.882 8 N -0.710 5.710 9 C 0.507 3.493 10 O -0.574 6.574 11 C 0.033 3.967 12 O -0.306 6.306 13 C 0.148 3.852 14 C -0.193 4.193 15 C -0.028 4.028 16 C -0.116 4.116 17 C -0.061 4.061 18 O -0.558 6.558 19 Si 0.945 3.055 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.245 1.245 23 C -0.071 4.071 24 C -0.141 4.141 25 Br -0.053 7.053 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.422 0.578 42 H 0.133 0.867 43 H 0.131 0.869 44 H 0.178 0.822 45 H 0.165 0.835 46 H 0.110 0.890 47 H 0.400 0.600 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.277 -3.110 -9.501 11.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.280 2.720 3 C -0.581 4.581 4 C -0.571 4.571 5 C -0.509 4.509 6 C -0.154 4.154 7 C -0.006 4.006 8 N -0.365 5.365 9 C 0.293 3.707 10 O -0.452 6.452 11 C -0.044 4.044 12 O -0.218 6.218 13 C 0.100 3.900 14 C -0.212 4.212 15 C -0.046 4.046 16 C -0.117 4.117 17 C -0.173 4.173 18 O -0.368 6.368 19 Si 0.771 3.229 20 H -0.186 1.186 21 H -0.202 1.202 22 H -0.169 1.169 23 C -0.091 4.091 24 C -0.221 4.221 25 Br 0.032 6.968 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.260 0.740 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.195 0.805 45 H 0.183 0.817 46 H 0.128 0.872 47 H 0.251 0.749 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.826 -2.062 -7.523 8.689 hybrid contribution -0.313 -0.345 -0.324 0.568 sum -4.139 -2.408 -7.848 9.193 Atomic orbital electron populations 1.26338 1.21987 1.04758 1.04083 0.77981 0.65178 0.64215 0.64650 1.26455 1.06245 1.21349 1.04074 1.26331 1.06179 1.08703 1.15924 1.26322 1.06165 1.01655 1.16735 1.21465 1.02313 0.95252 0.96419 1.21549 0.98798 0.80388 0.99837 1.45755 1.53713 1.12135 1.24881 1.20578 0.80191 0.87806 0.82094 1.90786 1.39084 1.77882 1.37468 1.22865 1.02508 0.89903 0.89149 1.86240 1.70583 1.21173 1.43817 1.18782 0.94121 0.83507 0.93576 1.21665 1.01739 0.97067 1.00730 1.21262 0.94607 0.92652 0.96121 1.19436 1.00111 0.96333 0.95852 1.24396 0.86733 0.95622 1.10505 1.86444 1.18183 1.35433 1.96724 0.85764 0.79585 0.79942 0.77573 1.18565 1.20164 1.16896 1.20876 0.97335 0.92028 0.98852 1.21069 1.07711 0.96130 0.97220 1.96744 1.66242 1.81132 1.52651 0.91647 0.91690 0.90501 0.91652 0.91613 0.91668 0.90485 0.91688 0.91621 0.90650 0.90616 0.89288 0.89328 0.93021 0.92971 0.73957 0.84954 0.85178 0.80456 0.81737 0.87221 0.74878 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.89 8.65 113.37 0.98 3.87 16 2 Si 1.09 -8.98 12.19 68.60 0.84 -8.15 16 3 C -0.48 1.66 8.65 113.37 0.98 2.64 16 4 C -0.46 2.94 8.65 113.37 0.98 3.92 16 5 C -0.42 2.72 4.45 71.98 0.32 3.04 16 6 C -0.12 0.90 4.70 30.60 0.14 1.05 16 7 C 0.12 -0.15 5.67 86.38 0.49 0.34 16 8 N -0.71 2.79 5.56 -463.05 -2.57 0.22 16 9 C 0.51 1.80 7.91 87.66 0.69 2.49 16 10 O -0.57 -9.33 16.50 15.99 0.26 -9.06 16 11 C 0.03 -0.11 5.22 71.24 0.37 0.26 16 12 O -0.31 -2.06 9.01 -73.54 -0.66 -2.72 16 13 C 0.15 0.69 6.68 22.52 0.15 0.84 16 14 C -0.19 0.56 9.04 22.36 0.20 0.76 16 15 C -0.03 0.08 9.60 22.26 0.21 0.29 16 16 C -0.12 -0.11 5.42 -19.85 -0.11 -0.22 16 17 C -0.06 0.21 2.81 71.24 0.20 0.41 16 18 O -0.56 1.89 12.74 -148.98 -1.90 -0.01 16 19 Si 0.95 -0.52 25.07 68.60 1.72 1.19 16 20 H -0.26 -0.46 7.11 99.48 0.71 0.25 16 21 H -0.28 -1.29 7.11 99.48 0.71 -0.59 16 22 H -0.25 0.44 7.11 99.48 0.71 1.15 16 23 C -0.07 -0.39 8.40 22.27 0.19 -0.20 16 24 C -0.14 -1.16 6.24 22.40 0.14 -1.02 16 25 Br -0.05 -0.61 33.16 -20.37 -0.68 -1.28 16 26 H 0.06 -0.33 7.96 -2.39 -0.02 -0.35 16 27 H 0.06 -0.33 7.96 -2.39 -0.02 -0.35 16 28 H 0.08 -0.59 7.79 -2.39 -0.02 -0.61 16 29 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 30 H 0.06 -0.19 7.96 -2.39 -0.02 -0.21 16 31 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 32 H 0.08 -0.60 7.79 -2.39 -0.02 -0.62 16 33 H 0.06 -0.34 7.96 -2.39 -0.02 -0.35 16 34 H 0.06 -0.35 7.96 -2.39 -0.02 -0.36 16 35 H 0.07 -0.40 7.96 -2.39 -0.02 -0.41 16 36 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 37 H 0.09 -0.95 7.79 -2.39 -0.02 -0.97 16 38 H 0.09 -0.94 7.79 -2.39 -0.02 -0.96 16 39 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.42 -5.32 8.47 -92.71 -0.79 -6.10 16 42 H 0.13 -1.42 7.66 -2.39 -0.02 -1.44 16 43 H 0.13 -1.34 7.66 -2.39 -0.02 -1.35 16 44 H 0.18 -2.01 6.30 -2.91 -0.02 -2.03 16 45 H 0.17 -1.31 8.06 -2.91 -0.02 -1.34 16 46 H 0.11 -0.99 7.96 -2.39 -0.02 -1.01 16 47 H 0.40 -4.83 8.74 -74.05 -0.65 -5.48 16 48 H 0.13 0.66 4.87 -2.91 -0.01 0.64 16 Total: 0.00 -27.68 416.50 3.25 -24.43 By element: Atomic # 1 Polarization: -23.40 SS G_CDS: 0.29 Total: -23.11 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 5.95 Total: 18.49 kcal Atomic # 7 Polarization: 2.79 SS G_CDS: -2.57 Total: 0.22 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -2.30 Total: -11.79 kcal Atomic # 14 Polarization: -9.51 SS G_CDS: 2.56 Total: -6.95 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -0.68 Total: -1.28 kcal Total: -27.68 3.25 -24.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_6201210.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.534 kcal (2) G-P(sol) polarization free energy of solvation -27.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds