Wall clock time and date at job start Tue Mar 9 2021 13:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35964 * 117.00394 * 2 1 4 4 C 1.39443 * 120.12665 * 180.02562 * 3 2 1 5 5 O 1.34782 * 133.24611 * 0.04428 * 4 3 2 6 6 C 1.34929 * 110.84502 * 179.97438 * 5 4 3 7 7 C 1.46991 * 125.13536 * 179.97438 * 6 5 4 8 8 O 1.21661 * 119.99524 * 180.02562 * 7 6 5 9 9 N 1.34769 * 120.00427 * 0.04020 * 7 6 5 10 10 C 1.46504 * 120.00240 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.47250 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47182 * 180.02562 * 11 10 9 13 13 Si 1.86299 * 109.47337 * 180.02562 * 12 11 10 14 14 C 1.86297 * 109.47154 * 59.99324 * 13 12 11 15 15 C 1.86298 * 109.47158 * 179.97438 * 13 12 11 16 16 C 1.86305 * 109.46557 * 299.99604 * 13 12 11 17 17 C 1.35805 * 109.71677 * 0.02562 * 6 5 4 18 18 C 1.40606 * 119.13893 * 180.02562 * 4 3 2 19 19 C 1.39783 * 120.11899 * 0.03210 * 18 4 3 20 20 C 1.50699 * 120.09067 * 180.02562 * 19 18 4 21 21 O 1.42904 * 109.47388 * 74.98011 * 20 19 18 22 22 Si 1.86301 * 109.46972 * 194.97502 * 20 19 18 23 23 H 1.48507 * 109.47066 * 59.99883 * 22 20 19 24 24 H 1.48501 * 109.47351 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47110 * 300.00206 * 22 20 19 26 26 C 1.36627 * 119.81258 * 359.97438 * 19 18 4 27 27 C 1.38268 * 120.11530 * 0.37965 * 3 2 1 28 28 H 1.08998 * 109.47283 * 59.99835 * 1 2 3 29 29 H 1.09000 * 109.47205 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46972 * 299.99570 * 1 2 3 31 31 H 0.97002 * 120.00266 * 0.02562 * 9 7 6 32 32 H 1.09001 * 109.47131 * 300.00288 * 10 9 7 33 33 H 1.08999 * 109.46904 * 59.99620 * 10 9 7 34 34 H 1.09001 * 109.47147 * 300.00105 * 11 10 9 35 35 H 1.08994 * 109.47333 * 60.00232 * 11 10 9 36 36 H 1.09009 * 109.46734 * 299.99637 * 12 11 10 37 37 H 1.08999 * 109.47219 * 59.99295 * 12 11 10 38 38 H 1.09001 * 109.46874 * 60.00365 * 14 13 12 39 39 H 1.08998 * 109.46886 * 179.97438 * 14 13 12 40 40 H 1.08999 * 109.47312 * 300.00029 * 14 13 12 41 41 H 1.09008 * 109.46921 * 59.99598 * 15 13 12 42 42 H 1.08998 * 109.47305 * 179.97438 * 15 13 12 43 43 H 1.09001 * 109.47208 * 299.99842 * 15 13 12 44 44 H 1.08999 * 109.47062 * 60.00496 * 16 13 12 45 45 H 1.09005 * 109.46870 * 179.97438 * 16 13 12 46 46 H 1.08995 * 109.47327 * 299.99602 * 16 13 12 47 47 H 1.08003 * 126.95435 * 180.02562 * 17 6 5 48 48 H 1.08997 * 109.47848 * 314.97475 * 20 19 18 49 49 H 0.96698 * 114.00100 * 59.99619 * 21 20 19 50 50 H 1.08002 * 119.75001 * 179.97438 * 26 19 18 51 51 H 1.07992 * 119.66401 * 359.93616 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4386 1.2874 -0.0005 5 8 4.4142 0.3574 -0.0019 6 6 5.6318 0.9387 -0.0024 7 6 6.9132 0.2185 -0.0033 8 8 7.9596 0.8390 -0.0033 9 7 6.9288 -1.1291 -0.0045 10 6 8.2059 -1.8469 -0.0048 11 6 7.9437 -3.3542 -0.0068 12 6 9.2775 -4.1039 -0.0065 13 14 8.9584 -5.9394 -0.0097 14 6 7.9883 -6.3983 -1.5325 15 6 10.5824 -6.8521 -0.0101 16 6 7.9851 -6.4030 1.5098 17 6 5.4944 2.2898 -0.0009 18 6 4.0554 2.5509 0.0000 19 6 3.2765 3.7116 0.0018 20 6 3.9381 5.0656 0.0018 21 8 4.4593 5.3412 -1.3000 22 14 2.6868 6.3682 0.4581 23 1 2.1451 6.0819 1.8109 24 1 3.3389 7.7024 0.4588 25 1 1.5791 6.3586 -0.5308 26 6 1.9136 3.6151 0.0024 27 6 1.2957 2.3726 0.0079 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 6.0944 -1.6239 -0.0051 32 1 8.7746 -1.5762 -0.8944 33 1 8.7742 -1.5777 0.8855 34 1 7.3748 -3.6253 0.8826 35 1 7.3757 -3.6231 -0.8973 36 1 9.8468 -3.8329 -0.8958 37 1 9.8453 -3.8350 0.8843 38 1 8.5577 -6.1270 -2.4215 39 1 7.8019 -7.4722 -1.5346 40 1 7.0380 -5.8643 -1.5327 41 1 11.1504 -6.5835 0.8807 42 1 10.3957 -7.9260 -0.0116 43 1 11.1515 -6.5807 -0.8993 44 1 7.0349 -5.8689 1.5095 45 1 7.7979 -7.4768 1.5077 46 1 8.5527 -6.1345 2.4007 47 1 6.2873 3.0231 -0.0012 48 1 4.7512 5.0728 0.7277 49 1 3.7899 5.3507 -1.9977 50 1 1.3128 4.5125 0.0042 51 1 0.2175 2.3120 0.0131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704008_6672420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:19:14 Heat of formation + Delta-G solvation = -121.509939 kcal Electronic energy + Delta-G solvation = -30162.322982 eV Core-core repulsion = 25959.064238 eV Total energy + Delta-G solvation = -4203.258743 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.166 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.78012 -41.02209 -40.42388 -39.09471 -37.02952 -36.95506 -33.70161 -33.67238 -31.94454 -31.03793 -29.43311 -28.65688 -28.29480 -28.27439 -27.22665 -26.23410 -24.48899 -24.04980 -22.53291 -21.96277 -21.68359 -19.79050 -19.01925 -18.57184 -17.92411 -17.81557 -17.21574 -17.04326 -16.86017 -16.41211 -16.21776 -15.85366 -15.73857 -15.42786 -15.03093 -14.73397 -14.55874 -14.28327 -14.22226 -14.05900 -13.99635 -13.79794 -13.59602 -13.48045 -13.47271 -13.30153 -13.29149 -13.03971 -13.02811 -12.96430 -12.53255 -12.47789 -12.30820 -12.09639 -12.07503 -11.73826 -11.71553 -11.61469 -11.04279 -10.69231 -10.65062 -10.42999 -10.41854 -10.37544 -9.85619 -9.02997 -0.69730 0.05990 0.59051 1.12951 1.19203 1.46268 1.56863 1.84750 1.86940 1.94695 2.02527 2.07271 2.07358 2.12596 2.36663 2.77048 3.17203 3.42049 3.59435 3.67026 3.79520 3.85186 3.94528 4.09525 4.10055 4.16251 4.29970 4.34813 4.39627 4.42500 4.52104 4.68399 4.73105 4.74459 4.81670 4.83381 4.83801 4.83931 4.87922 4.88993 4.89269 4.89905 5.01313 5.03131 5.12890 5.18862 5.25439 5.32634 5.51375 5.55759 5.62600 5.68804 5.69891 6.16939 6.27360 6.71847 6.80244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.332 6.332 3 C 0.137 3.863 4 C 0.021 3.979 5 O -0.181 6.181 6 C -0.034 4.034 7 C 0.598 3.402 8 O -0.548 6.548 9 N -0.705 5.705 10 C 0.114 3.886 11 C -0.121 4.121 12 C -0.421 4.421 13 Si 1.090 2.910 14 C -0.468 4.468 15 C -0.472 4.472 16 C -0.468 4.468 17 C -0.110 4.110 18 C -0.094 4.094 19 C -0.103 4.103 20 C -0.087 4.087 21 O -0.552 6.552 22 Si 0.990 3.010 23 H -0.253 1.253 24 H -0.276 1.276 25 H -0.232 1.232 26 C -0.098 4.098 27 C -0.166 4.166 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.418 0.582 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.175 0.825 48 H 0.114 0.886 49 H 0.389 0.611 50 H 0.161 0.839 51 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.243 -2.014 0.081 7.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.246 6.246 3 C 0.091 3.909 4 C -0.027 4.027 5 O -0.083 6.083 6 C -0.084 4.084 7 C 0.384 3.616 8 O -0.428 6.428 9 N -0.355 5.355 10 C -0.008 4.008 11 C -0.158 4.158 12 C -0.505 4.505 13 Si 1.281 2.719 14 C -0.574 4.574 15 C -0.577 4.577 16 C -0.574 4.574 17 C -0.131 4.131 18 C -0.095 4.095 19 C -0.104 4.104 20 C -0.196 4.196 21 O -0.359 6.359 22 Si 0.812 3.188 23 H -0.177 1.177 24 H -0.202 1.202 25 H -0.155 1.155 26 C -0.116 4.116 27 C -0.185 4.185 28 H 0.093 0.907 29 H 0.135 0.865 30 H 0.093 0.907 31 H 0.254 0.746 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.192 0.808 48 H 0.132 0.868 49 H 0.238 0.762 50 H 0.178 0.822 51 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -6.493 -1.467 0.626 6.686 hybrid contribution -0.276 -0.565 -0.377 0.734 sum -6.769 -2.032 0.249 7.072 Atomic orbital electron populations 1.23484 0.75349 1.06055 1.03091 1.86143 1.24277 1.25752 1.88452 1.17956 0.86121 0.86810 1.00019 1.19216 0.88227 0.87192 1.08045 1.84010 1.12691 1.35034 1.76527 1.21957 0.83972 0.92806 1.09702 1.16719 0.85019 0.82898 0.77005 1.90892 1.31474 1.68346 1.52072 1.45980 1.11893 1.04942 1.72706 1.21753 0.83970 0.92793 1.02317 1.21482 0.99023 0.91184 1.04122 1.26296 0.99183 1.19606 1.05460 0.77964 0.64700 0.64223 0.65049 1.26375 1.09357 1.05288 1.16378 1.26391 1.18434 1.08611 1.04279 1.26372 1.09383 1.05313 1.16309 1.22879 0.95365 0.94410 1.00460 1.19562 0.92370 0.92708 1.04906 1.19656 0.93376 0.94394 1.02982 1.25209 1.07413 0.97702 0.89305 1.86523 1.39272 1.93345 1.16752 0.85137 0.76595 0.75935 0.81109 1.17668 1.20164 1.15519 1.20873 0.93124 0.98835 0.98734 1.21354 1.01779 0.89648 1.05685 0.90724 0.86533 0.90725 0.74551 0.91660 0.91606 0.89803 0.89826 0.90106 0.90080 0.91474 0.91672 0.91031 0.91437 0.91605 0.91441 0.91028 0.91674 0.91457 0.80786 0.86818 0.76154 0.82223 0.80387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.09 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.95 10.50 -93.15 -0.98 -1.93 16 3 C 0.14 0.51 6.70 22.57 0.15 0.66 16 4 C 0.02 0.17 7.35 23.14 0.17 0.34 16 5 O -0.18 -1.61 10.28 -13.48 -0.14 -1.75 16 6 C -0.03 -0.32 7.07 24.00 0.17 -0.15 16 7 C 0.60 5.77 7.80 86.54 0.67 6.45 16 8 O -0.55 -8.75 16.83 -4.22 -0.07 -8.82 16 9 N -0.70 -2.28 5.55 -466.80 -2.59 -4.87 16 10 C 0.11 0.13 5.67 86.38 0.49 0.62 16 11 C -0.12 0.54 4.70 30.59 0.14 0.68 16 12 C -0.42 2.21 4.45 71.98 0.32 2.53 16 13 Si 1.09 -7.33 12.19 68.60 0.84 -6.50 16 14 C -0.47 1.89 8.65 113.37 0.98 2.87 16 15 C -0.47 1.45 8.65 113.37 0.98 2.43 16 16 C -0.47 1.91 8.65 113.37 0.98 2.89 16 17 C -0.11 -0.96 10.68 23.79 0.25 -0.71 16 18 C -0.09 -0.65 6.16 -20.24 -0.12 -0.78 16 19 C -0.10 -0.21 5.26 -19.87 -0.10 -0.31 16 20 C -0.09 0.00 2.71 71.24 0.19 0.19 16 21 O -0.55 -0.92 12.88 -148.98 -1.92 -2.84 16 22 Si 0.99 -3.05 25.50 68.60 1.75 -1.30 16 23 H -0.25 0.56 7.11 99.48 0.71 1.26 16 24 H -0.28 -0.34 7.11 99.48 0.71 0.37 16 25 H -0.23 1.40 6.74 99.48 0.67 2.07 16 26 C -0.10 0.20 8.62 22.02 0.19 0.39 16 27 C -0.17 0.35 9.03 22.40 0.20 0.56 16 28 H 0.07 -0.71 7.68 -2.39 -0.02 -0.72 16 29 H 0.12 -1.06 8.14 -2.39 -0.02 -1.08 16 30 H 0.07 -0.70 7.64 -2.39 -0.02 -0.72 16 31 H 0.42 -0.34 8.19 -92.71 -0.76 -1.10 16 32 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.08 -0.53 7.79 -2.39 -0.02 -0.55 16 35 H 0.08 -0.53 7.79 -2.39 -0.02 -0.54 16 36 H 0.08 -0.40 7.96 -2.38 -0.02 -0.42 16 37 H 0.08 -0.41 7.96 -2.39 -0.02 -0.43 16 38 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 39 H 0.06 -0.20 7.96 -2.39 -0.02 -0.22 16 40 H 0.07 -0.32 7.79 -2.39 -0.02 -0.34 16 41 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 42 H 0.06 -0.16 7.96 -2.39 -0.02 -0.18 16 43 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 44 H 0.07 -0.32 7.79 -2.39 -0.02 -0.34 16 45 H 0.06 -0.21 7.96 -2.38 -0.02 -0.23 16 46 H 0.07 -0.24 7.96 -2.39 -0.02 -0.25 16 47 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 48 H 0.11 0.02 7.96 -2.39 -0.02 0.00 16 49 H 0.39 -2.20 8.70 -74.06 -0.64 -2.84 16 50 H 0.16 -1.17 4.84 -2.91 -0.01 -1.18 16 51 H 0.18 -1.63 6.26 -2.91 -0.02 -1.65 16 Total: 0.00 -20.34 423.23 3.94 -16.40 By element: Atomic # 1 Polarization: -8.34 SS G_CDS: 0.27 Total: -8.07 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 6.78 Total: 19.68 kcal Atomic # 7 Polarization: -2.28 SS G_CDS: -2.59 Total: -4.87 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -3.11 Total: -15.34 kcal Atomic # 14 Polarization: -10.39 SS G_CDS: 2.59 Total: -7.80 kcal Total: -20.34 3.94 -16.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_6672420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.109 kcal (2) G-P(sol) polarization free energy of solvation -20.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds