Wall clock time and date at job start Tue Mar 9 2021 13:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33814 * 122.44927 * 2 1 4 4 C 1.50697 * 124.52312 * 359.96076 * 3 2 1 5 5 O 1.42895 * 109.47410 * 113.45859 * 4 3 2 6 6 Si 1.86301 * 109.47251 * 233.46127 * 4 3 2 7 7 H 1.48504 * 109.47443 * 180.02562 * 6 4 3 8 8 H 1.48505 * 109.47074 * 299.99707 * 6 4 3 9 9 H 1.48502 * 109.47368 * 59.99835 * 6 4 3 10 10 S 1.70621 * 110.95542 * 179.97438 * 3 2 1 11 11 C 1.75828 * 91.56253 * 0.02562 * 10 3 2 12 12 C 1.46578 * 125.45854 * 180.02562 * 11 10 3 13 13 O 1.21705 * 120.00172 * 180.02562 * 12 11 10 14 14 N 1.34780 * 120.00198 * 0.02562 * 12 11 10 15 15 C 1.46499 * 120.00288 * 179.72508 * 14 12 11 16 16 C 1.52998 * 109.46913 * 180.27681 * 15 14 12 17 17 C 1.53008 * 109.46763 * 180.02562 * 16 15 14 18 18 Si 1.86302 * 109.46806 * 180.02562 * 17 16 15 19 19 C 1.86297 * 109.47463 * 59.99595 * 18 17 16 20 20 C 1.86300 * 109.46945 * 179.97438 * 18 17 16 21 21 C 1.86304 * 109.46875 * 299.99480 * 18 17 16 22 22 C 1.36650 * 109.08250 * 0.26161 * 11 10 3 23 23 H 1.08993 * 109.47016 * 85.00892 * 1 2 3 24 24 H 1.09002 * 109.46768 * 205.01140 * 1 2 3 25 25 H 1.08999 * 109.46445 * 325.00951 * 1 2 3 26 26 H 1.09003 * 109.47555 * 353.45512 * 4 3 2 27 27 H 0.96700 * 114.00278 * 180.02562 * 5 4 3 28 28 H 0.97000 * 119.99467 * 0.02562 * 14 12 11 29 29 H 1.09004 * 109.46716 * 300.27502 * 15 14 12 30 30 H 1.08993 * 109.46976 * 60.27256 * 15 14 12 31 31 H 1.09004 * 109.47283 * 299.99473 * 16 15 14 32 32 H 1.08993 * 109.47647 * 59.99986 * 16 15 14 33 33 H 1.09000 * 109.46478 * 299.99239 * 17 16 15 34 34 H 1.08993 * 109.47170 * 59.99547 * 17 16 15 35 35 H 1.09004 * 109.47141 * 59.99671 * 19 18 17 36 36 H 1.08995 * 109.46949 * 180.02562 * 19 18 17 37 37 H 1.09005 * 109.47260 * 300.00262 * 19 18 17 38 38 H 1.09000 * 109.47132 * 59.99145 * 20 18 17 39 39 H 1.08994 * 109.47250 * 180.02562 * 20 18 17 40 40 H 1.09004 * 109.46709 * 299.99748 * 20 18 17 41 41 H 1.08996 * 109.47011 * 60.00571 * 21 18 17 42 42 H 1.08994 * 109.46675 * 180.02562 * 21 18 17 43 43 H 1.09000 * 109.46827 * 300.00090 * 21 18 17 44 44 H 1.08000 * 123.35018 * 179.73558 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6355 2.5161 -0.0009 5 8 1.9420 3.1648 1.2349 6 14 2.3558 3.4962 -1.4120 7 1 1.7754 4.8631 -1.4125 8 1 3.8295 3.5849 -1.2517 9 1 2.0373 2.8222 -2.6963 10 16 3.8970 0.7892 0.0007 11 6 3.5938 -0.9427 0.0002 12 6 4.6232 -1.9862 0.0010 13 8 4.3002 -3.1596 0.0001 14 7 5.9274 -1.6463 0.0028 15 6 6.9562 -2.6892 0.0097 16 6 8.3412 -2.0391 0.0173 17 6 9.4158 -3.1284 0.0238 18 14 11.1022 -2.3369 0.0339 19 6 11.2822 -1.2778 1.5559 20 6 12.4106 -3.6631 0.0427 21 6 11.3004 -1.2783 -1.4863 22 6 2.2447 -1.1600 -0.0063 23 1 -0.3633 0.0894 -1.0237 24 1 -0.3633 -0.9313 0.4345 25 1 -0.3632 0.8419 0.5893 26 1 0.5538 2.4511 -0.1186 27 1 1.5926 4.0637 1.3046 28 1 6.1848 -0.7110 0.0039 29 1 6.8403 -3.3079 0.8996 30 1 6.8508 -3.3094 -0.8803 31 1 8.4571 -1.4204 -0.8726 32 1 8.4467 -1.4189 0.9073 33 1 9.3001 -3.7474 0.9135 34 1 9.3101 -3.7483 -0.8664 35 1 11.1662 -1.8971 2.4454 36 1 12.2687 -0.8144 1.5615 37 1 10.5167 -0.5018 1.5512 38 1 12.3054 -4.2832 -0.8476 39 1 13.3973 -3.2001 0.0490 40 1 12.2944 -4.2821 0.9323 41 1 10.5350 -0.5023 -1.4910 42 1 12.2872 -0.8156 -1.4806 43 1 11.1951 -1.8980 -2.3768 44 1 1.8020 -2.1451 -0.0121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9704008_6739946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:19:27 Heat of formation + Delta-G solvation = -102.810053 kcal Electronic energy + Delta-G solvation = -21395.523589 eV Core-core repulsion = 18176.044645 eV Total energy + Delta-G solvation = -3219.478944 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.124 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.74772 -39.58239 -37.63199 -36.69241 -33.68962 -32.35726 -29.97314 -29.59221 -28.46180 -28.45503 -27.79712 -25.73978 -23.99131 -22.57075 -21.57553 -19.92776 -19.03912 -18.61988 -17.53558 -16.86010 -16.79647 -16.06479 -15.82799 -15.59305 -15.06862 -14.89624 -14.60888 -14.38611 -14.23599 -14.20702 -14.09420 -13.96133 -13.53647 -13.44880 -13.33832 -13.21195 -13.17520 -13.12302 -13.10784 -12.94444 -12.69337 -12.61931 -12.31534 -12.22284 -11.87537 -11.76208 -11.08939 -10.84867 -10.82827 -10.66479 -10.56137 -10.12360 -9.63941 -9.38949 -0.58243 0.38151 0.80618 0.95097 1.22564 1.31182 1.42075 1.73012 1.78546 1.83346 1.85078 2.16634 2.26042 2.60466 3.14193 3.70051 3.75663 3.99822 4.06023 4.12329 4.16541 4.23872 4.38853 4.47979 4.63002 4.64965 4.67514 4.68978 4.71464 4.72878 4.73768 4.74058 4.75989 4.84186 4.96288 5.00753 5.11842 5.28597 5.28904 5.39976 5.40725 5.47650 5.52055 5.52523 6.38587 6.42943 7.17820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.097 4.097 3 C -0.193 4.193 4 C -0.048 4.048 5 O -0.542 6.542 6 Si 0.916 3.084 7 H -0.239 1.239 8 H -0.234 1.234 9 H -0.241 1.241 10 S 0.210 5.790 11 C -0.264 4.264 12 C 0.591 3.409 13 O -0.526 6.526 14 N -0.729 5.729 15 C 0.120 3.880 16 C -0.123 4.123 17 C -0.411 4.411 18 Si 1.012 2.988 19 C -0.451 4.451 20 C -0.452 4.452 21 C -0.451 4.451 22 C -0.047 4.047 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.384 0.616 28 H 0.398 0.602 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.423 4.529 -0.925 4.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.111 4.111 3 C -0.312 4.312 4 C -0.160 4.160 5 O -0.349 6.349 6 Si 0.735 3.265 7 H -0.162 1.162 8 H -0.157 1.157 9 H -0.163 1.163 10 S 0.480 5.520 11 C -0.385 4.385 12 C 0.377 3.623 13 O -0.404 6.404 14 N -0.381 5.381 15 C -0.003 4.003 16 C -0.160 4.160 17 C -0.497 4.497 18 Si 1.208 2.792 19 C -0.559 4.559 20 C -0.559 4.559 21 C -0.559 4.559 22 C -0.081 4.081 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.107 0.893 27 H 0.232 0.768 28 H 0.232 0.768 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.198 4.477 -1.502 5.209 hybrid contribution -1.692 -0.152 0.327 1.730 sum 0.506 4.325 -1.175 4.510 Atomic orbital electron populations 1.20608 0.88992 1.03509 1.02733 1.18673 0.98156 0.90729 1.03502 1.23229 0.98481 0.98249 1.11244 1.24145 1.02957 0.92575 0.96330 1.86528 1.80115 1.32676 1.35574 0.86150 0.82361 0.80304 0.77664 1.16176 1.15697 1.16350 1.82951 1.03513 0.97670 1.67849 1.24594 0.98137 0.97176 1.18566 1.16927 0.81632 0.87382 0.76322 1.90856 1.81650 1.18173 1.49701 1.45936 1.05586 1.10537 1.76050 1.21562 0.85791 0.90095 1.02879 1.21443 0.93020 0.98669 1.02896 1.26143 1.14165 1.04054 1.05308 0.79171 0.66149 0.66867 0.67049 1.26170 1.04530 1.09701 1.15468 1.26141 1.12550 1.12806 1.04445 1.26167 1.04556 1.09692 1.15438 1.20651 0.90894 0.99951 0.96582 0.90699 0.90827 0.90981 0.89312 0.76767 0.76780 0.91093 0.91087 0.90986 0.90960 0.90196 0.90201 0.91268 0.91320 0.91306 0.91270 0.91283 0.91265 0.91312 0.91320 0.91283 0.82564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.10 9.48 36.01 0.34 0.44 16 2 C -0.10 -0.13 5.78 -106.45 -0.62 -0.74 16 3 C -0.19 -0.23 4.86 -35.86 -0.17 -0.41 16 4 C -0.05 0.05 2.76 36.00 0.10 0.14 16 5 O -0.54 0.38 12.86 -35.23 -0.45 -0.08 16 6 Si 0.92 -1.08 27.42 -169.99 -4.66 -5.74 16 7 H -0.24 0.37 7.11 56.52 0.40 0.77 16 8 H -0.23 0.07 7.11 56.52 0.40 0.47 16 9 H -0.24 0.03 7.11 56.52 0.40 0.43 16 10 S 0.21 0.22 20.83 -107.50 -2.24 -2.02 16 11 C -0.26 -0.75 6.45 -36.79 -0.24 -0.98 16 12 C 0.59 2.42 7.78 -12.90 -0.10 2.32 16 13 O -0.53 -4.00 16.84 5.18 0.09 -3.91 16 14 N -0.73 -0.87 5.55 -61.65 -0.34 -1.21 16 15 C 0.12 0.06 5.67 -4.04 -0.02 0.04 16 16 C -0.12 0.25 4.70 -26.73 -0.13 0.12 16 17 C -0.41 0.99 4.45 37.16 0.17 1.15 16 18 Si 1.01 -3.26 12.19 -169.99 -2.07 -5.33 16 19 C -0.45 0.88 8.65 101.05 0.87 1.76 16 20 C -0.45 0.73 8.65 101.05 0.87 1.60 16 21 C -0.45 0.91 8.65 101.05 0.87 1.79 16 22 C -0.05 -0.12 9.78 -40.43 -0.40 -0.51 16 23 H 0.07 -0.15 8.14 -51.93 -0.42 -0.58 16 24 H 0.07 -0.10 8.11 -51.93 -0.42 -0.52 16 25 H 0.07 -0.12 6.99 -51.93 -0.36 -0.48 16 26 H 0.09 -0.25 6.24 -51.93 -0.32 -0.57 16 27 H 0.38 -2.01 8.74 45.56 0.40 -1.61 16 28 H 0.40 -0.43 7.59 -40.82 -0.31 -0.74 16 29 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.07 -0.21 7.79 -51.93 -0.40 -0.61 16 32 H 0.07 -0.20 7.79 -51.93 -0.40 -0.61 16 33 H 0.08 -0.18 7.96 -51.93 -0.41 -0.59 16 34 H 0.08 -0.18 7.96 -51.93 -0.41 -0.60 16 35 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 36 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 37 H 0.07 -0.14 7.79 -51.93 -0.40 -0.55 16 38 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 39 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 40 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 41 H 0.07 -0.15 7.79 -51.93 -0.40 -0.55 16 42 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 43 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 44 H 0.16 0.31 8.06 -52.49 -0.42 -0.11 16 LS Contribution 377.67 15.07 5.69 5.69 Total: 0.00 -7.36 377.67 -9.28 -16.64 By element: Atomic # 1 Polarization: -3.92 SS G_CDS: -6.85 Total: -10.76 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 1.56 Total: 6.73 kcal Atomic # 7 Polarization: -0.87 SS G_CDS: -0.34 Total: -1.21 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: -0.37 Total: -3.99 kcal Atomic # 14 Polarization: -4.34 SS G_CDS: -6.73 Total: -11.08 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -2.24 Total: -2.02 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -7.36 -9.28 -16.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_6739946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.174 kcal (2) G-P(sol) polarization free energy of solvation -7.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds