Wall clock time and date at job start Tue Mar 9 2021 13:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33814 * 122.44927 * 2 1 4 4 C 1.50697 * 124.52312 * 359.96076 * 3 2 1 5 5 O 1.42895 * 109.47410 * 113.45859 * 4 3 2 6 6 Si 1.86301 * 109.47251 * 233.46127 * 4 3 2 7 7 H 1.48504 * 109.47443 * 180.02562 * 6 4 3 8 8 H 1.48505 * 109.47074 * 299.99707 * 6 4 3 9 9 H 1.48502 * 109.47368 * 59.99835 * 6 4 3 10 10 S 1.70621 * 110.95542 * 179.97438 * 3 2 1 11 11 C 1.75828 * 91.56253 * 0.02562 * 10 3 2 12 12 C 1.46578 * 125.45854 * 180.02562 * 11 10 3 13 13 O 1.21705 * 120.00172 * 180.02562 * 12 11 10 14 14 N 1.34780 * 120.00198 * 0.02562 * 12 11 10 15 15 C 1.46499 * 120.00288 * 179.72508 * 14 12 11 16 16 C 1.52998 * 109.46913 * 180.27681 * 15 14 12 17 17 C 1.53008 * 109.46763 * 180.02562 * 16 15 14 18 18 Si 1.86302 * 109.46806 * 180.02562 * 17 16 15 19 19 C 1.86297 * 109.47463 * 59.99595 * 18 17 16 20 20 C 1.86300 * 109.46945 * 179.97438 * 18 17 16 21 21 C 1.86304 * 109.46875 * 299.99480 * 18 17 16 22 22 C 1.36650 * 109.08250 * 0.26161 * 11 10 3 23 23 H 1.08993 * 109.47016 * 85.00892 * 1 2 3 24 24 H 1.09002 * 109.46768 * 205.01140 * 1 2 3 25 25 H 1.08999 * 109.46445 * 325.00951 * 1 2 3 26 26 H 1.09003 * 109.47555 * 353.45512 * 4 3 2 27 27 H 0.96700 * 114.00278 * 180.02562 * 5 4 3 28 28 H 0.97000 * 119.99467 * 0.02562 * 14 12 11 29 29 H 1.09004 * 109.46716 * 300.27502 * 15 14 12 30 30 H 1.08993 * 109.46976 * 60.27256 * 15 14 12 31 31 H 1.09004 * 109.47283 * 299.99473 * 16 15 14 32 32 H 1.08993 * 109.47647 * 59.99986 * 16 15 14 33 33 H 1.09000 * 109.46478 * 299.99239 * 17 16 15 34 34 H 1.08993 * 109.47170 * 59.99547 * 17 16 15 35 35 H 1.09004 * 109.47141 * 59.99671 * 19 18 17 36 36 H 1.08995 * 109.46949 * 180.02562 * 19 18 17 37 37 H 1.09005 * 109.47260 * 300.00262 * 19 18 17 38 38 H 1.09000 * 109.47132 * 59.99145 * 20 18 17 39 39 H 1.08994 * 109.47250 * 180.02562 * 20 18 17 40 40 H 1.09004 * 109.46709 * 299.99748 * 20 18 17 41 41 H 1.08996 * 109.47011 * 60.00571 * 21 18 17 42 42 H 1.08994 * 109.46675 * 180.02562 * 21 18 17 43 43 H 1.09000 * 109.46827 * 300.00090 * 21 18 17 44 44 H 1.08000 * 123.35018 * 179.73558 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6355 2.5161 -0.0009 5 8 1.9420 3.1648 1.2349 6 14 2.3558 3.4962 -1.4120 7 1 1.7754 4.8631 -1.4125 8 1 3.8295 3.5849 -1.2517 9 1 2.0373 2.8222 -2.6963 10 16 3.8970 0.7892 0.0007 11 6 3.5938 -0.9427 0.0002 12 6 4.6232 -1.9862 0.0010 13 8 4.3002 -3.1596 0.0001 14 7 5.9274 -1.6463 0.0028 15 6 6.9562 -2.6892 0.0097 16 6 8.3412 -2.0391 0.0173 17 6 9.4158 -3.1284 0.0238 18 14 11.1022 -2.3369 0.0339 19 6 11.2822 -1.2778 1.5559 20 6 12.4106 -3.6631 0.0427 21 6 11.3004 -1.2783 -1.4863 22 6 2.2447 -1.1600 -0.0063 23 1 -0.3633 0.0894 -1.0237 24 1 -0.3633 -0.9313 0.4345 25 1 -0.3632 0.8419 0.5893 26 1 0.5538 2.4511 -0.1186 27 1 1.5926 4.0637 1.3046 28 1 6.1848 -0.7110 0.0039 29 1 6.8403 -3.3079 0.8996 30 1 6.8508 -3.3094 -0.8803 31 1 8.4571 -1.4204 -0.8726 32 1 8.4467 -1.4189 0.9073 33 1 9.3001 -3.7474 0.9135 34 1 9.3101 -3.7483 -0.8664 35 1 11.1662 -1.8971 2.4454 36 1 12.2687 -0.8144 1.5615 37 1 10.5167 -0.5018 1.5512 38 1 12.3054 -4.2832 -0.8476 39 1 13.3973 -3.2001 0.0490 40 1 12.2944 -4.2821 0.9323 41 1 10.5350 -0.5023 -1.4910 42 1 12.2872 -0.8156 -1.4806 43 1 11.1951 -1.8980 -2.3768 44 1 1.8020 -2.1451 -0.0121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704008_6739946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:19:27 Heat of formation + Delta-G solvation = -97.981988 kcal Electronic energy + Delta-G solvation = -21395.314228 eV Core-core repulsion = 18176.044645 eV Total energy + Delta-G solvation = -3219.269584 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.124 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.98748 -39.64369 -37.55586 -36.82451 -33.76252 -32.39126 -29.91873 -29.43865 -28.30427 -28.26931 -27.82563 -25.72604 -24.04077 -22.54896 -21.72685 -19.97678 -19.16031 -18.51684 -17.60424 -17.03572 -16.88521 -16.03637 -15.85662 -15.67609 -15.14691 -14.85799 -14.58245 -14.32327 -14.20937 -14.06303 -13.99536 -13.79123 -13.48644 -13.35499 -13.26500 -13.17016 -13.05089 -13.01549 -12.96477 -12.95079 -12.63913 -12.52006 -12.26378 -12.19864 -11.78588 -11.73885 -11.38960 -10.69305 -10.64845 -10.59266 -10.42804 -10.31952 -9.71698 -9.44673 -0.71835 0.28942 0.73474 0.99278 1.20907 1.39857 1.47078 1.87377 1.87957 2.01497 2.02471 2.07634 2.11862 2.77028 3.26822 3.64252 3.82778 4.07263 4.08903 4.11004 4.23507 4.33971 4.40443 4.51652 4.67667 4.72215 4.78027 4.83050 4.83602 4.84230 4.88253 4.89359 4.90280 4.90530 4.99363 5.04470 5.22987 5.24684 5.28246 5.39314 5.51323 5.61898 5.68842 5.70482 6.28348 6.75087 6.95728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.106 4.106 3 C -0.201 4.201 4 C -0.048 4.048 5 O -0.559 6.559 6 Si 0.940 3.060 7 H -0.228 1.228 8 H -0.250 1.250 9 H -0.258 1.258 10 S 0.231 5.769 11 C -0.287 4.287 12 C 0.587 3.413 13 O -0.572 6.572 14 N -0.717 5.717 15 C 0.117 3.883 16 C -0.121 4.121 17 C -0.422 4.422 18 Si 1.088 2.912 19 C -0.467 4.467 20 C -0.472 4.472 21 C -0.466 4.466 22 C -0.056 4.056 23 H 0.087 0.913 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.111 0.889 27 H 0.404 0.596 28 H 0.410 0.590 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.100 6.190 -0.877 6.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.119 4.119 3 C -0.321 4.321 4 C -0.159 4.159 5 O -0.369 6.369 6 Si 0.760 3.240 7 H -0.150 1.150 8 H -0.173 1.173 9 H -0.182 1.182 10 S 0.501 5.499 11 C -0.407 4.407 12 C 0.374 3.626 13 O -0.454 6.454 14 N -0.369 5.369 15 C -0.006 4.006 16 C -0.158 4.158 17 C -0.506 4.506 18 Si 1.279 2.721 19 C -0.573 4.573 20 C -0.578 4.578 21 C -0.572 4.572 22 C -0.090 4.090 23 H 0.105 0.895 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.129 0.871 27 H 0.255 0.745 28 H 0.246 0.754 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.898 6.188 -1.445 6.632 hybrid contribution -1.571 -0.635 0.310 1.723 sum 0.327 5.552 -1.134 5.677 Atomic orbital electron populations 1.20684 0.87362 1.04074 1.03734 1.18875 0.99387 0.90202 1.03395 1.23647 0.98515 0.99483 1.10432 1.24207 1.04146 0.91261 0.96333 1.86479 1.80625 1.34308 1.35456 0.85827 0.81217 0.80496 0.76467 1.15027 1.17315 1.18220 1.82776 1.03864 0.95871 1.67375 1.24582 0.98075 0.98119 1.19913 1.17206 0.82613 0.87070 0.75747 1.90818 1.82442 1.19938 1.52156 1.45915 1.04906 1.11446 1.74587 1.21653 0.87013 0.90117 1.01827 1.21495 0.91224 0.98926 1.04181 1.26313 1.14791 1.04207 1.05301 0.77994 0.64060 0.64769 0.65285 1.26357 1.04534 1.10193 1.16211 1.26399 1.13416 1.13730 1.04226 1.26347 1.04572 1.10178 1.16144 1.20815 0.91136 1.00446 0.96616 0.89483 0.90675 0.89954 0.87116 0.74495 0.75371 0.92256 0.92138 0.89640 0.89716 0.90302 0.90244 0.91526 0.91607 0.90883 0.91487 0.91554 0.91514 0.90859 0.91608 0.91489 0.83015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.27 9.48 71.24 0.68 0.95 16 2 C -0.11 -0.28 5.78 -21.05 -0.12 -0.41 16 3 C -0.20 -0.41 4.86 24.68 0.12 -0.29 16 4 C -0.05 0.15 2.76 71.23 0.20 0.35 16 5 O -0.56 1.58 12.86 -148.98 -1.92 -0.34 16 6 Si 0.94 -3.06 27.42 68.60 1.88 -1.17 16 7 H -0.23 1.12 7.11 99.48 0.71 1.83 16 8 H -0.25 0.22 7.11 99.48 0.71 0.93 16 9 H -0.26 0.10 7.11 99.48 0.71 0.81 16 10 S 0.23 0.52 20.83 -56.49 -1.18 -0.66 16 11 C -0.29 -1.99 6.45 24.08 0.16 -1.83 16 12 C 0.59 5.87 7.78 86.42 0.67 6.54 16 13 O -0.57 -10.20 16.84 -4.36 -0.07 -10.28 16 14 N -0.72 -2.43 5.55 -467.18 -2.59 -5.02 16 15 C 0.12 0.24 5.67 86.38 0.49 0.73 16 16 C -0.12 0.52 4.70 30.60 0.14 0.66 16 17 C -0.42 2.06 4.45 71.98 0.32 2.38 16 18 Si 1.09 -7.41 12.19 68.60 0.84 -6.57 16 19 C -0.47 2.05 8.65 113.37 0.98 3.03 16 20 C -0.47 1.41 8.65 113.37 0.98 2.39 16 21 C -0.47 2.12 8.65 113.37 0.98 3.10 16 22 C -0.06 -0.35 9.78 21.72 0.21 -0.14 16 23 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 24 H 0.07 -0.22 8.11 -2.39 -0.02 -0.24 16 25 H 0.08 -0.39 6.99 -2.39 -0.02 -0.41 16 26 H 0.11 -0.84 6.24 -2.39 -0.01 -0.86 16 27 H 0.40 -4.95 8.74 -74.06 -0.65 -5.59 16 28 H 0.41 -0.78 7.59 -92.71 -0.70 -1.48 16 29 H 0.06 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.09 -0.57 7.79 -2.38 -0.02 -0.59 16 32 H 0.08 -0.55 7.79 -2.39 -0.02 -0.57 16 33 H 0.08 -0.34 7.96 -2.39 -0.02 -0.36 16 34 H 0.08 -0.36 7.96 -2.39 -0.02 -0.38 16 35 H 0.07 -0.24 7.96 -2.38 -0.02 -0.26 16 36 H 0.06 -0.23 7.96 -2.39 -0.02 -0.25 16 37 H 0.07 -0.37 7.79 -2.38 -0.02 -0.39 16 38 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 39 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 40 H 0.07 -0.16 7.96 -2.38 -0.02 -0.18 16 41 H 0.07 -0.39 7.79 -2.39 -0.02 -0.41 16 42 H 0.06 -0.24 7.96 -2.39 -0.02 -0.26 16 43 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 44 H 0.15 0.94 8.06 -2.91 -0.02 0.91 16 Total: 0.00 -18.09 377.67 3.16 -14.93 By element: Atomic # 1 Polarization: -8.76 SS G_CDS: 0.39 Total: -8.36 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 5.81 Total: 17.47 kcal Atomic # 7 Polarization: -2.43 SS G_CDS: -2.59 Total: -5.02 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -1.99 Total: -10.61 kcal Atomic # 14 Polarization: -10.47 SS G_CDS: 2.72 Total: -7.75 kcal Atomic # 16 Polarization: 0.52 SS G_CDS: -1.18 Total: -0.66 kcal Total: -18.09 3.16 -14.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_6739946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.049 kcal (2) G-P(sol) polarization free energy of solvation -18.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds