Wall clock time and date at job start Tue Mar 9 2021 13:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86290 * 109.47271 * 2 1 4 4 C 1.86305 * 109.46688 * 240.00026 * 2 1 3 5 5 C 1.86294 * 109.47082 * 120.00270 * 2 1 3 6 6 C 1.53002 * 109.47301 * 59.99721 * 5 2 1 7 7 C 1.52999 * 109.47057 * 179.97438 * 6 5 2 8 8 N 1.46506 * 109.47305 * 180.02562 * 7 6 5 9 9 C 1.34769 * 120.00065 * 180.02562 * 8 7 6 10 10 O 1.21634 * 120.00318 * 359.97438 * 9 8 7 11 11 C 1.47189 * 119.99779 * 179.97438 * 9 8 7 12 12 C 1.36014 * 123.46281 * 0.02724 * 11 9 8 13 13 S 1.70444 * 110.81789 * 180.22145 * 12 11 9 14 14 C 1.75505 * 92.44557 * 359.68127 * 13 12 11 15 15 C 1.50707 * 124.71217 * 180.08282 * 14 13 12 16 16 O 1.42901 * 109.46724 * 120.26627 * 15 14 13 17 17 Si 1.86299 * 109.46972 * 0.27066 * 15 14 13 18 18 H 1.48496 * 109.46830 * 179.97438 * 17 15 14 19 19 H 1.48495 * 109.47184 * 299.99822 * 17 15 14 20 20 H 1.48505 * 109.47141 * 60.00166 * 17 15 14 21 21 C 1.32765 * 110.57364 * 0.32002 * 14 13 12 22 22 H 1.08999 * 109.46699 * 299.99674 * 1 2 3 23 23 H 1.08999 * 109.46979 * 59.99813 * 1 2 3 24 24 H 1.09001 * 109.47363 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47704 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47272 * 300.00008 * 3 2 1 27 27 H 1.09004 * 109.47108 * 59.99777 * 3 2 1 28 28 H 1.08991 * 109.47088 * 299.99887 * 4 2 1 29 29 H 1.08999 * 109.47279 * 60.00344 * 4 2 1 30 30 H 1.09002 * 109.46400 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.47399 * 299.99627 * 5 2 1 32 32 H 1.08997 * 109.47271 * 179.97438 * 5 2 1 33 33 H 1.09004 * 109.47085 * 60.00372 * 6 5 2 34 34 H 1.08994 * 109.47284 * 299.99781 * 6 5 2 35 35 H 1.08999 * 109.47434 * 60.00035 * 7 6 5 36 36 H 1.08997 * 109.47481 * 300.00060 * 7 6 5 37 37 H 0.97004 * 119.99282 * 359.97438 * 8 7 6 38 38 H 1.08002 * 124.58647 * 359.94919 * 12 11 9 39 39 H 1.08997 * 109.47010 * 240.26935 * 15 14 13 40 40 H 0.96698 * 113.99442 * 179.97438 * 16 15 14 41 41 H 1.07999 * 123.45683 * 179.76569 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7563 0.0000 4 6 2.4839 -0.8783 -1.5212 5 6 2.4840 -0.8783 1.5210 6 6 1.9740 -2.3208 1.5211 7 6 2.4845 -3.0422 2.7700 8 7 1.9966 -4.4237 2.7697 9 6 2.3223 -5.2535 3.7804 10 8 3.0217 -4.8557 4.6926 11 6 1.8317 -6.6412 3.7804 12 6 1.0472 -7.1593 2.7975 13 16 0.6635 -8.7876 3.1237 14 6 1.5866 -8.7844 4.6164 15 6 1.7325 -9.9681 5.5378 16 8 3.1148 -10.3098 5.6589 17 14 0.7934 -11.4178 4.8398 18 1 0.9377 -12.5843 5.7473 19 1 -0.6430 -11.0628 4.7138 20 1 1.3375 -11.7621 3.5016 21 6 2.1343 -7.5929 4.8237 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.5740 1.7564 -0.0005 26 1 2.1208 2.2702 -0.8900 27 1 2.1207 2.2702 0.8900 28 1 2.1206 -1.9058 -1.5212 29 1 2.1206 -0.3644 -2.4112 30 1 3.5739 -0.8778 -1.5214 31 1 2.1208 -0.3645 2.4111 32 1 3.5740 -0.8787 1.5208 33 1 2.3373 -2.8346 0.6311 34 1 0.8840 -2.3208 1.5211 35 1 2.1216 -2.5286 3.6602 36 1 3.5745 -3.0423 2.7695 37 1 1.4386 -4.7407 2.0424 38 1 0.7092 -6.6116 1.9302 39 1 1.3332 -9.7154 6.5200 40 1 3.2839 -11.0648 6.2389 41 1 2.7436 -7.3593 5.6843 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9704008_6894386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:22 Heat of formation + Delta-G solvation = -96.282899 kcal Electronic energy + Delta-G solvation = -19435.289280 eV Core-core repulsion = 16371.630994 eV Total energy + Delta-G solvation = -3063.658286 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 301.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.81739 -38.69755 -37.22629 -36.62468 -33.68468 -31.77965 -29.58813 -28.47114 -28.46846 -27.39146 -26.90765 -24.81616 -22.56824 -21.72515 -20.27494 -18.83904 -18.42531 -17.96683 -16.75880 -16.67859 -16.42220 -15.75638 -15.49047 -14.92196 -14.78123 -14.29612 -14.23746 -14.15832 -14.01344 -13.96249 -13.80566 -13.68429 -13.42662 -13.37518 -13.14972 -13.13564 -13.12033 -12.68161 -12.62256 -12.41039 -12.17964 -11.98932 -11.87389 -10.93821 -10.84052 -10.83628 -10.54977 -10.50450 -10.07040 -9.89426 -9.44207 -0.31997 0.31246 0.67096 0.94193 1.07366 1.37362 1.39491 1.72817 1.80754 1.82448 1.84045 2.23450 2.45132 2.59689 3.29106 3.64109 3.88003 3.95702 3.99767 4.13453 4.24332 4.30523 4.38061 4.63499 4.64073 4.67858 4.70290 4.71512 4.72914 4.73125 4.75581 4.77388 4.97411 5.10287 5.12062 5.27878 5.30433 5.42839 5.49729 5.50631 5.51486 6.48710 6.52189 7.28945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.012 2.988 3 C -0.453 4.453 4 C -0.451 4.451 5 C -0.412 4.412 6 C -0.121 4.121 7 C 0.119 3.881 8 N -0.728 5.728 9 C 0.577 3.423 10 O -0.532 6.532 11 C -0.154 4.154 12 C -0.205 4.205 13 S 0.184 5.816 14 C -0.199 4.199 15 C -0.040 4.040 16 O -0.541 6.541 17 Si 0.888 3.112 18 H -0.228 1.228 19 H -0.231 1.231 20 H -0.230 1.230 21 C -0.051 4.051 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.398 0.602 38 H 0.172 0.828 39 H 0.087 0.913 40 H 0.383 0.617 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.390 -1.343 -2.492 4.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.208 2.792 3 C -0.560 4.560 4 C -0.559 4.559 5 C -0.497 4.497 6 C -0.159 4.159 7 C -0.004 4.004 8 N -0.380 5.380 9 C 0.362 3.638 10 O -0.409 6.409 11 C -0.172 4.172 12 C -0.343 4.343 13 S 0.450 5.550 14 C -0.315 4.315 15 C -0.153 4.153 16 O -0.348 6.348 17 Si 0.707 3.293 18 H -0.150 1.150 19 H -0.154 1.154 20 H -0.152 1.152 21 C -0.080 4.080 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.233 0.767 38 H 0.190 0.810 39 H 0.105 0.895 40 H 0.231 0.769 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.126 -2.346 -3.324 5.795 hybrid contribution 0.770 0.991 0.819 1.498 sum -3.356 -1.356 -2.505 4.402 Atomic orbital electron populations 1.26169 1.20951 1.04306 1.04414 0.79158 0.66895 0.66743 0.66366 1.26145 1.06290 1.19123 1.04421 1.26169 1.06280 1.07959 1.15444 1.26144 1.06221 1.01224 1.16121 1.21427 1.01273 0.95796 0.97394 1.21533 0.99672 0.80214 0.98970 1.45901 1.54158 1.12750 1.25232 1.17591 0.79960 0.84271 0.81948 1.90822 1.37549 1.76905 1.35674 1.20260 1.04239 0.95634 0.97095 1.25689 1.03682 1.01387 1.03531 1.83143 1.48582 1.06574 1.16690 1.23548 1.08195 0.98831 1.00973 1.23974 0.89597 1.01060 1.00625 1.86530 1.22069 1.54383 1.71769 0.86357 0.80662 0.78952 0.83309 1.15017 1.15405 1.15228 1.21017 0.98057 0.90009 0.98895 0.91280 0.91327 0.91354 0.91261 0.91293 0.91263 0.91351 0.91332 0.91274 0.90221 0.90217 0.91070 0.91068 0.91255 0.91258 0.76711 0.81032 0.89544 0.76871 0.82467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.99 8.65 101.05 0.87 1.87 16 2 Si 1.01 -3.43 12.19 -169.99 -2.07 -5.50 16 3 C -0.45 0.76 8.65 101.05 0.87 1.64 16 4 C -0.45 0.97 8.65 101.05 0.87 1.84 16 5 C -0.41 1.04 4.45 37.16 0.17 1.20 16 6 C -0.12 0.29 4.70 -26.73 -0.13 0.16 16 7 C 0.12 0.03 5.67 -4.04 -0.02 0.01 16 8 N -0.73 -0.34 5.52 -61.46 -0.34 -0.68 16 9 C 0.58 2.20 7.79 -12.63 -0.10 2.10 16 10 O -0.53 -4.15 16.80 5.25 0.09 -4.07 16 11 C -0.15 -0.37 5.98 -104.63 -0.63 -0.99 16 12 C -0.20 0.06 10.38 29.93 0.31 0.37 16 13 S 0.18 0.01 20.18 -107.50 -2.17 -2.16 16 14 C -0.20 -0.30 5.72 -36.18 -0.21 -0.51 16 15 C -0.04 0.02 2.94 36.01 0.11 0.12 16 16 O -0.54 -0.15 12.82 -35.23 -0.45 -0.60 16 17 Si 0.89 -0.91 26.19 -169.99 -4.45 -5.36 16 18 H -0.23 0.31 7.11 56.52 0.40 0.71 16 19 H -0.23 0.18 7.11 56.52 0.40 0.58 16 20 H -0.23 -0.06 7.11 56.52 0.40 0.34 16 21 C -0.05 -0.15 9.91 -39.02 -0.39 -0.54 16 22 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 23 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 24 H 0.07 -0.16 7.79 -51.93 -0.40 -0.57 16 25 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 28 H 0.07 -0.16 7.79 -51.93 -0.40 -0.56 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 31 H 0.08 -0.19 7.96 -51.93 -0.41 -0.60 16 32 H 0.08 -0.18 7.96 -51.93 -0.41 -0.60 16 33 H 0.07 -0.23 7.79 -51.93 -0.40 -0.63 16 34 H 0.07 -0.23 7.79 -51.93 -0.40 -0.64 16 35 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 36 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 37 H 0.40 -1.02 6.97 -40.82 -0.28 -1.31 16 38 H 0.17 -0.62 7.01 -52.49 -0.37 -0.99 16 39 H 0.09 -0.19 7.96 -51.93 -0.41 -0.60 16 40 H 0.38 -1.68 8.74 45.56 0.40 -1.28 16 41 H 0.16 0.55 8.06 -52.49 -0.42 0.13 16 LS Contribution 356.39 15.07 5.37 5.37 Total: 0.00 -7.73 356.39 -8.36 -16.09 By element: Atomic # 1 Polarization: -4.30 SS G_CDS: -6.07 Total: -10.37 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 1.74 Total: 7.27 kcal Atomic # 7 Polarization: -0.34 SS G_CDS: -0.34 Total: -0.68 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.36 Total: -4.67 kcal Atomic # 14 Polarization: -4.33 SS G_CDS: -6.52 Total: -10.86 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.17 Total: -2.16 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -7.73 -8.36 -16.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_6894386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.189 kcal (2) G-P(sol) polarization free energy of solvation -7.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds