Wall clock time and date at job start Tue Mar 9 2021 13:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86290 * 109.47271 * 2 1 4 4 C 1.86305 * 109.46688 * 240.00026 * 2 1 3 5 5 C 1.86294 * 109.47082 * 120.00270 * 2 1 3 6 6 C 1.53002 * 109.47301 * 59.99721 * 5 2 1 7 7 C 1.52999 * 109.47057 * 179.97438 * 6 5 2 8 8 N 1.46506 * 109.47305 * 180.02562 * 7 6 5 9 9 C 1.34769 * 120.00065 * 180.02562 * 8 7 6 10 10 O 1.21634 * 120.00318 * 359.97438 * 9 8 7 11 11 C 1.47189 * 119.99779 * 179.97438 * 9 8 7 12 12 C 1.36014 * 123.46281 * 0.02724 * 11 9 8 13 13 S 1.70444 * 110.81789 * 180.22145 * 12 11 9 14 14 C 1.75505 * 92.44557 * 359.68127 * 13 12 11 15 15 C 1.50707 * 124.71217 * 180.08282 * 14 13 12 16 16 O 1.42901 * 109.46724 * 120.26627 * 15 14 13 17 17 Si 1.86299 * 109.46972 * 0.27066 * 15 14 13 18 18 H 1.48496 * 109.46830 * 179.97438 * 17 15 14 19 19 H 1.48495 * 109.47184 * 299.99822 * 17 15 14 20 20 H 1.48505 * 109.47141 * 60.00166 * 17 15 14 21 21 C 1.32765 * 110.57364 * 0.32002 * 14 13 12 22 22 H 1.08999 * 109.46699 * 299.99674 * 1 2 3 23 23 H 1.08999 * 109.46979 * 59.99813 * 1 2 3 24 24 H 1.09001 * 109.47363 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47704 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47272 * 300.00008 * 3 2 1 27 27 H 1.09004 * 109.47108 * 59.99777 * 3 2 1 28 28 H 1.08991 * 109.47088 * 299.99887 * 4 2 1 29 29 H 1.08999 * 109.47279 * 60.00344 * 4 2 1 30 30 H 1.09002 * 109.46400 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.47399 * 299.99627 * 5 2 1 32 32 H 1.08997 * 109.47271 * 179.97438 * 5 2 1 33 33 H 1.09004 * 109.47085 * 60.00372 * 6 5 2 34 34 H 1.08994 * 109.47284 * 299.99781 * 6 5 2 35 35 H 1.08999 * 109.47434 * 60.00035 * 7 6 5 36 36 H 1.08997 * 109.47481 * 300.00060 * 7 6 5 37 37 H 0.97004 * 119.99282 * 359.97438 * 8 7 6 38 38 H 1.08002 * 124.58647 * 359.94919 * 12 11 9 39 39 H 1.08997 * 109.47010 * 240.26935 * 15 14 13 40 40 H 0.96698 * 113.99442 * 179.97438 * 16 15 14 41 41 H 1.07999 * 123.45683 * 179.76569 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7563 0.0000 4 6 2.4839 -0.8783 -1.5212 5 6 2.4840 -0.8783 1.5210 6 6 1.9740 -2.3208 1.5211 7 6 2.4845 -3.0422 2.7700 8 7 1.9966 -4.4237 2.7697 9 6 2.3223 -5.2535 3.7804 10 8 3.0217 -4.8557 4.6926 11 6 1.8317 -6.6412 3.7804 12 6 1.0472 -7.1593 2.7975 13 16 0.6635 -8.7876 3.1237 14 6 1.5866 -8.7844 4.6164 15 6 1.7325 -9.9681 5.5378 16 8 3.1148 -10.3098 5.6589 17 14 0.7934 -11.4178 4.8398 18 1 0.9377 -12.5843 5.7473 19 1 -0.6430 -11.0628 4.7138 20 1 1.3375 -11.7621 3.5016 21 6 2.1343 -7.5929 4.8237 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.5740 1.7564 -0.0005 26 1 2.1208 2.2702 -0.8900 27 1 2.1207 2.2702 0.8900 28 1 2.1206 -1.9058 -1.5212 29 1 2.1206 -0.3644 -2.4112 30 1 3.5739 -0.8778 -1.5214 31 1 2.1208 -0.3645 2.4111 32 1 3.5740 -0.8787 1.5208 33 1 2.3373 -2.8346 0.6311 34 1 0.8840 -2.3208 1.5211 35 1 2.1216 -2.5286 3.6602 36 1 3.5745 -3.0423 2.7695 37 1 1.4386 -4.7407 2.0424 38 1 0.7092 -6.6116 1.9302 39 1 1.3332 -9.7154 6.5200 40 1 3.2839 -11.0648 6.2389 41 1 2.7436 -7.3593 5.6843 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704008_6894386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:21 Heat of formation + Delta-G solvation = -93.049626 kcal Electronic energy + Delta-G solvation = -19435.149075 eV Core-core repulsion = 16371.630994 eV Total energy + Delta-G solvation = -3063.518081 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 301.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.02342 -38.73675 -37.23403 -36.76468 -33.70126 -31.79383 -29.41283 -28.29535 -28.25766 -27.39932 -26.94267 -24.84739 -22.50430 -21.81981 -20.38368 -18.84069 -18.40590 -18.09999 -16.80480 -16.77885 -16.37797 -15.83473 -15.57078 -14.93454 -14.74835 -14.21616 -14.08537 -14.05595 -13.96847 -13.83773 -13.77296 -13.70471 -13.37673 -13.28276 -13.01745 -13.00389 -12.95505 -12.67635 -12.49545 -12.39716 -12.12779 -12.00207 -11.70570 -11.13242 -10.68396 -10.63727 -10.48850 -10.39877 -10.24173 -9.92884 -9.48622 -0.37299 0.30288 0.63545 0.80706 1.09837 1.46115 1.47691 1.87950 1.93219 2.03373 2.09173 2.20023 2.24349 2.78155 3.38184 3.71314 3.88703 3.99522 4.12255 4.15442 4.28756 4.37121 4.45322 4.69868 4.70292 4.78054 4.83648 4.83772 4.89223 4.90402 4.91526 4.91715 4.98590 5.06906 5.16324 5.27508 5.33558 5.53076 5.62572 5.69887 5.71720 6.45593 6.76782 7.12826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.091 2.909 3 C -0.475 4.475 4 C -0.466 4.466 5 C -0.424 4.424 6 C -0.118 4.118 7 C 0.117 3.883 8 N -0.712 5.712 9 C 0.572 3.428 10 O -0.586 6.586 11 C -0.181 4.181 12 C -0.185 4.185 13 S 0.214 5.786 14 C -0.211 4.211 15 C -0.049 4.049 16 O -0.563 6.563 17 Si 0.917 3.083 18 H -0.220 1.220 19 H -0.232 1.232 20 H -0.249 1.249 21 C -0.075 4.075 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.415 0.585 38 H 0.208 0.792 39 H 0.101 0.899 40 H 0.401 0.599 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.759 -2.171 -3.816 6.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.282 2.718 3 C -0.580 4.580 4 C -0.572 4.572 5 C -0.508 4.508 6 C -0.155 4.155 7 C -0.006 4.006 8 N -0.364 5.364 9 C 0.359 3.641 10 O -0.468 6.468 11 C -0.199 4.199 12 C -0.323 4.323 13 S 0.481 5.519 14 C -0.327 4.327 15 C -0.160 4.160 16 O -0.373 6.373 17 Si 0.736 3.264 18 H -0.142 1.142 19 H -0.155 1.155 20 H -0.172 1.172 21 C -0.104 4.104 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.253 0.747 38 H 0.225 0.775 39 H 0.119 0.881 40 H 0.252 0.748 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.509 -3.170 -4.664 7.884 hybrid contribution 1.195 1.236 1.207 2.101 sum -4.314 -1.934 -3.457 5.857 Atomic orbital electron populations 1.26339 1.22037 1.04669 1.04129 0.77951 0.65131 0.64264 0.64502 1.26433 1.06264 1.21159 1.04131 1.26348 1.06189 1.08621 1.16075 1.26329 1.06213 1.01359 1.16889 1.21469 1.02239 0.95483 0.96327 1.21587 0.98867 0.80205 0.99986 1.45806 1.53385 1.12441 1.24734 1.17911 0.79325 0.85080 0.81798 1.90783 1.40199 1.77958 1.37842 1.20150 1.06363 0.95063 0.98360 1.26068 1.01443 1.01442 1.03378 1.83058 1.47399 1.06234 1.15245 1.23887 1.07907 0.98917 1.01979 1.24210 0.89548 1.00967 1.01303 1.86480 1.22591 1.55632 1.72572 0.85963 0.79911 0.78394 0.82132 1.14178 1.15475 1.17206 1.21001 0.99111 0.91165 0.99160 0.91567 0.91645 0.90676 0.91606 0.91583 0.91567 0.90701 0.91648 0.91622 0.90457 0.90533 0.89564 0.89452 0.92681 0.92830 0.74699 0.77481 0.88093 0.74788 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.51 8.65 113.37 0.98 3.49 16 2 Si 1.09 -8.11 12.19 68.60 0.84 -7.28 16 3 C -0.47 1.48 8.65 113.37 0.98 2.46 16 4 C -0.47 2.43 8.65 113.37 0.98 3.41 16 5 C -0.42 2.26 4.45 71.98 0.32 2.58 16 6 C -0.12 0.66 4.70 30.59 0.14 0.81 16 7 C 0.12 0.15 5.67 86.38 0.49 0.64 16 8 N -0.71 -0.76 5.52 -466.60 -2.58 -3.34 16 9 C 0.57 5.24 7.79 86.60 0.67 5.91 16 10 O -0.59 -10.96 16.80 -4.14 -0.07 -11.03 16 11 C -0.18 -1.02 5.98 -19.87 -0.12 -1.14 16 12 C -0.19 0.31 10.38 67.30 0.70 1.01 16 13 S 0.21 -0.19 20.18 -56.49 -1.14 -1.33 16 14 C -0.21 -0.77 5.72 24.51 0.14 -0.63 16 15 C -0.05 0.02 2.94 71.24 0.21 0.23 16 16 O -0.56 -0.70 12.82 -148.98 -1.91 -2.61 16 17 Si 0.92 -2.47 26.19 68.60 1.80 -0.67 16 18 H -0.22 0.88 7.11 99.48 0.71 1.58 16 19 H -0.23 0.62 7.11 99.48 0.71 1.33 16 20 H -0.25 -0.07 7.11 99.48 0.71 0.64 16 21 C -0.08 -0.59 9.91 22.67 0.22 -0.36 16 22 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 23 H 0.06 -0.29 7.96 -2.39 -0.02 -0.31 16 24 H 0.07 -0.49 7.79 -2.39 -0.02 -0.51 16 25 H 0.06 -0.16 7.96 -2.39 -0.02 -0.18 16 26 H 0.06 -0.17 7.96 -2.39 -0.02 -0.19 16 27 H 0.07 -0.17 7.96 -2.38 -0.02 -0.19 16 28 H 0.07 -0.47 7.79 -2.39 -0.02 -0.49 16 29 H 0.06 -0.28 7.96 -2.39 -0.02 -0.30 16 30 H 0.06 -0.28 7.96 -2.39 -0.02 -0.29 16 31 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 32 H 0.08 -0.34 7.96 -2.39 -0.02 -0.36 16 33 H 0.09 -0.71 7.79 -2.38 -0.02 -0.73 16 34 H 0.09 -0.74 7.79 -2.39 -0.02 -0.76 16 35 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.42 -2.73 6.97 -92.71 -0.65 -3.37 16 38 H 0.21 -2.09 7.01 -2.91 -0.02 -2.11 16 39 H 0.10 -0.41 7.96 -2.39 -0.02 -0.43 16 40 H 0.40 -3.39 8.74 -74.06 -0.65 -4.04 16 41 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 Total: 0.00 -20.48 356.39 3.14 -17.34 By element: Atomic # 1 Polarization: -9.98 SS G_CDS: 0.48 Total: -9.50 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: 5.73 Total: 18.42 kcal Atomic # 7 Polarization: -0.76 SS G_CDS: -2.58 Total: -3.34 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -1.98 Total: -13.64 kcal Atomic # 14 Polarization: -10.58 SS G_CDS: 2.63 Total: -7.95 kcal Atomic # 16 Polarization: -0.19 SS G_CDS: -1.14 Total: -1.33 kcal Total: -20.48 3.14 -17.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_6894386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.714 kcal (2) G-P(sol) polarization free energy of solvation -20.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds