Wall clock time and date at job start Tue Mar 9 2021 13:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47084 * 2 1 4 4 C 1.34780 * 120.00281 * 179.97438 * 3 2 1 5 5 O 1.21856 * 119.99674 * 0.02562 * 4 3 2 6 6 C 1.40188 * 120.00079 * 179.97438 * 4 3 2 7 7 S 1.55354 * 120.00066 * 179.97438 * 6 4 3 8 8 O 1.52203 * 102.99987 * 286.87604 * 7 6 4 9 9 C 1.76197 * 103.00170 * 180.02562 * 7 6 4 10 10 C 1.38256 * 119.96492 * 29.97608 * 9 7 6 11 11 C 1.38309 * 120.14573 * 180.02562 * 10 9 7 12 12 C 1.38080 * 120.07164 * 359.74696 * 11 10 9 13 13 C 1.38911 * 119.92865 * 0.50928 * 12 11 10 14 14 N 1.39847 * 120.07637 * 179.77139 * 13 12 11 15 15 C 1.34775 * 120.00020 * 214.82333 * 14 13 12 16 16 O 1.21598 * 119.99716 * 355.35775 * 15 14 13 17 17 C 1.47547 * 119.99835 * 175.36458 * 15 14 13 18 18 C 1.40215 * 119.83339 * 359.97438 * 17 15 14 19 19 C 1.36226 * 120.37164 * 180.02562 * 18 17 15 20 20 C 1.39881 * 119.96927 * 0.02562 * 19 18 17 21 21 C 1.46252 * 133.84660 * 179.97438 * 20 19 18 22 22 C 1.50700 * 126.47917 * 359.97438 * 21 20 19 23 23 O 1.42905 * 109.47230 * 284.99976 * 22 21 20 24 24 Si 1.86295 * 109.47134 * 165.00077 * 22 21 20 25 25 H 1.48503 * 109.47212 * 299.99899 * 24 22 21 26 26 H 1.48498 * 109.47665 * 59.99794 * 24 22 21 27 27 H 1.48502 * 109.47432 * 180.02562 * 24 22 21 28 28 C 1.34449 * 107.04214 * 180.02562 * 21 20 19 29 29 N 1.36570 * 109.98146 * 0.02562 * 28 21 20 30 30 C 1.37835 * 109.86189 * 359.97438 * 29 28 21 31 31 C 1.38642 * 133.38006 * 179.71457 * 30 29 28 32 32 C 1.38129 * 119.96025 * 210.00553 * 9 7 6 33 33 H 1.09006 * 109.46782 * 180.02562 * 1 2 3 34 34 H 1.08992 * 109.47320 * 299.99656 * 1 2 3 35 35 H 1.08996 * 109.47450 * 60.00156 * 1 2 3 36 36 H 1.08998 * 109.47047 * 240.00017 * 2 1 3 37 37 H 1.09000 * 109.47002 * 119.99683 * 2 1 3 38 38 H 0.97005 * 119.99958 * 359.97438 * 3 2 1 39 39 H 1.08000 * 120.00052 * 0.02562 * 6 4 3 40 40 H 1.08003 * 119.93187 * 0.02562 * 10 9 7 41 41 H 1.08003 * 119.96102 * 180.02562 * 11 10 9 42 42 H 1.08007 * 120.04058 * 180.28223 * 12 11 10 43 43 H 0.97003 * 119.99503 * 34.81541 * 14 13 12 44 44 H 1.07990 * 119.81030 * 0.02782 * 18 17 15 45 45 H 1.08002 * 120.01326 * 180.02562 * 19 18 17 46 46 H 1.08995 * 109.47317 * 44.99856 * 22 21 20 47 47 H 0.96700 * 113.99970 * 180.02562 * 23 22 21 48 48 H 1.07992 * 125.01209 * 179.97438 * 28 21 20 49 49 H 0.96998 * 125.07246 * 180.02562 * 29 28 21 50 50 H 1.08003 * 120.16135 * 0.29444 * 31 30 29 51 51 H 1.07998 * 120.03995 * 359.97438 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1353 0.7013 0.0005 6 6 3.8106 2.9492 0.0000 7 16 5.3380 3.2332 0.0012 8 8 5.7520 2.8736 1.4210 9 6 5.4139 4.9935 0.0007 10 6 4.4066 5.7283 0.5981 11 6 4.4622 7.1103 0.5995 12 6 5.5273 7.7605 0.0083 13 6 6.5383 7.0254 -0.5974 14 7 7.6161 7.6809 -1.2012 15 6 8.1802 7.1675 -2.3123 16 8 7.8086 6.0922 -2.7416 17 6 9.2489 7.9101 -3.0077 18 6 9.6744 9.1499 -2.5097 19 6 10.6598 9.8451 -3.1433 20 6 11.2524 9.3225 -4.2976 21 6 12.3044 9.7928 -5.1982 22 6 13.0738 11.0832 -5.0805 23 8 12.2427 12.1722 -5.4872 24 14 14.5803 11.0098 -6.1740 25 1 15.4441 9.8781 -5.7514 26 1 14.1594 10.8113 -7.5842 27 1 15.3390 12.2811 -6.0576 28 6 12.4543 8.8568 -6.1517 29 7 11.5843 7.8266 -5.9353 30 6 10.8322 8.0778 -4.8078 31 6 9.8252 7.3791 -4.1597 32 6 6.4795 5.6379 -0.5970 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5137 0.8899 35 1 -0.3634 0.5138 -0.8899 36 1 1.8933 -0.5138 -0.8900 37 1 1.8933 -0.5138 0.8900 38 1 1.3879 2.1185 -0.0004 39 1 3.1088 3.7701 -0.0004 40 1 3.5745 5.2222 1.0647 41 1 3.6739 7.6814 1.0673 42 1 5.5724 8.8396 0.0137 43 1 7.9574 8.5051 -0.8204 44 1 9.2184 9.5558 -1.6190 45 1 10.9834 10.7994 -2.7545 46 1 13.3829 11.2288 -4.0455 47 1 12.6742 13.0362 -5.4374 48 1 13.1583 8.9119 -6.9687 49 1 11.5076 7.0357 -6.4915 50 1 9.4945 6.4246 -4.5417 51 1 7.2661 5.0633 -1.0636 RHF calculation, no. of doubly occupied orbitals= 76 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704022_12335838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:22:36 Heat of formation + Delta-G solvation = -129.012361 kcal Electronic energy + Delta-G solvation = -36710.772106 eV Core-core repulsion = 31665.263099 eV Total energy + Delta-G solvation = -5045.509007 eV No. of doubly occupied orbitals = 76 Molecular weight (most abundant/longest-lived isotopes) = 428.128 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.43689 -41.52051 -39.89453 -39.51860 -37.77178 -37.40142 -35.94146 -35.81688 -33.84119 -33.29807 -31.98036 -31.83086 -31.43317 -30.71077 -29.95050 -28.93751 -26.37951 -25.23554 -24.20924 -23.61391 -23.49869 -23.10683 -21.49581 -21.24701 -20.53989 -19.49265 -19.13342 -18.29302 -18.10550 -17.69830 -17.58192 -17.12369 -17.05048 -16.47095 -16.34213 -16.15977 -16.03781 -15.91210 -15.51260 -15.28553 -15.16321 -15.04187 -14.80349 -14.70486 -14.67495 -14.61573 -14.42148 -14.39073 -14.04077 -13.76707 -13.38612 -13.16467 -13.09379 -12.81783 -12.68734 -12.66217 -12.60990 -12.47783 -12.40869 -12.29258 -12.09664 -11.96977 -11.70884 -11.47349 -10.97014 -10.71226 -10.50071 -10.32482 -10.08130 -9.91932 -9.80775 -9.39359 -9.19284 -9.04063 -8.73067 -7.69858 -0.34711 0.19015 0.37088 0.47133 1.31113 1.40543 1.58249 1.66971 1.75236 1.86945 1.93639 2.03682 2.23572 2.67167 2.76522 2.92582 2.99802 3.33223 3.58102 3.67829 3.81273 3.84517 3.96882 4.12463 4.14926 4.15175 4.17988 4.19020 4.27843 4.35149 4.38232 4.44414 4.49056 4.52718 4.59206 4.63181 4.66127 4.81723 4.87572 4.88206 5.02039 5.04790 5.13818 5.22344 5.28650 5.30317 5.37079 5.40680 5.46361 5.54147 5.56728 5.66983 5.80293 6.02676 6.02815 6.04730 6.40590 6.55912 7.02021 7.09035 7.09798 8.05147 Molecular weight = 428.13amu Principal moments of inertia in cm(-1) A = 0.015838 B = 0.001203 C = 0.001153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.478244 B =23265.657429 C =24282.818919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.116 3.884 3 N -0.754 5.754 4 C 0.587 3.413 5 O -0.681 6.681 6 C -1.091 5.091 7 S 1.476 4.524 8 O -1.018 7.018 9 C -0.418 4.418 10 C -0.105 4.105 11 C -0.115 4.115 12 C -0.111 4.111 13 C 0.125 3.875 14 N -0.649 5.649 15 C 0.556 3.444 16 O -0.555 6.555 17 C -0.132 4.132 18 C -0.108 4.108 19 C -0.075 4.075 20 C -0.078 4.078 21 C -0.191 4.191 22 C -0.051 4.051 23 O -0.567 6.567 24 Si 0.986 3.014 25 H -0.261 1.261 26 H -0.259 1.259 27 H -0.253 1.253 28 C 0.078 3.922 29 N -0.578 5.578 30 C 0.066 3.934 31 C -0.063 4.063 32 C -0.073 4.073 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.029 0.971 38 H 0.395 0.605 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.156 0.844 42 H 0.176 0.824 43 H 0.429 0.571 44 H 0.155 0.845 45 H 0.152 0.848 46 H 0.084 0.916 47 H 0.394 0.606 48 H 0.201 0.799 49 H 0.434 0.566 50 H 0.130 0.870 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.003 26.621 -17.059 36.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.008 4.008 3 N -0.406 5.406 4 C 0.395 3.605 5 O -0.578 6.578 6 C -1.223 5.223 7 S 1.683 4.317 8 O -1.014 7.014 9 C -0.515 4.515 10 C -0.125 4.125 11 C -0.134 4.134 12 C -0.131 4.131 13 C 0.030 3.970 14 N -0.296 5.296 15 C 0.346 3.654 16 O -0.433 6.433 17 C -0.136 4.136 18 C -0.127 4.127 19 C -0.094 4.094 20 C -0.083 4.083 21 C -0.198 4.198 22 C -0.160 4.160 23 O -0.375 6.375 24 Si 0.808 3.192 25 H -0.185 1.185 26 H -0.183 1.183 27 H -0.177 1.177 28 C -0.051 4.051 29 N -0.181 5.181 30 C -0.040 4.040 31 C -0.085 4.085 32 C -0.094 4.094 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.228 0.772 39 H 0.124 0.876 40 H 0.112 0.888 41 H 0.174 0.826 42 H 0.193 0.807 43 H 0.270 0.730 44 H 0.173 0.827 45 H 0.169 0.831 46 H 0.102 0.898 47 H 0.244 0.756 48 H 0.218 0.782 49 H 0.274 0.726 50 H 0.148 0.852 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 19.273 24.001 -18.079 35.698 hybrid contribution -2.441 1.069 2.085 3.384 sum 16.832 25.070 -15.994 34.170 Atomic orbital electron populations 1.21884 0.91216 1.04183 1.02776 1.21165 0.96416 0.83663 0.99594 1.45655 1.06615 1.07825 1.80526 1.15538 0.81996 0.88153 0.74841 1.90551 1.56501 1.48514 1.62256 1.26839 1.20930 1.00806 1.73708 1.65868 0.84217 0.78329 1.03331 1.94351 1.85009 1.81754 1.40332 1.27909 0.99523 1.20770 1.03312 1.21209 0.97656 0.95813 0.97809 1.21345 0.99348 0.92926 0.99782 1.21292 0.91585 1.01336 0.98879 1.17812 0.90104 0.91002 0.98048 1.43117 1.31638 1.28251 1.26614 1.18723 0.81885 0.84982 0.79771 1.90816 1.63252 1.22604 1.66663 1.19242 0.99160 0.97388 0.97801 1.20945 0.97958 0.92824 1.00981 1.20412 0.95278 1.00322 0.93364 1.19577 0.97864 0.93887 0.96946 1.19917 1.03248 0.98086 0.98596 1.24163 1.01137 0.84759 1.05963 1.86515 1.43231 1.18004 1.89757 0.85231 0.74428 0.81110 0.78406 1.18472 1.18329 1.17677 1.22198 0.95447 0.87839 0.99625 1.41755 1.31684 1.21169 1.23500 1.18084 0.97376 0.97106 0.91470 1.20121 0.94266 0.99740 0.94344 1.20889 0.97241 0.94107 0.97189 0.88849 0.92010 0.91141 0.93694 0.95269 0.77182 0.87626 0.88755 0.82628 0.80695 0.73022 0.82733 0.83079 0.89809 0.75641 0.78235 0.72591 0.85226 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 10.03 71.98 0.72 -3.33 16 2 C 0.12 4.88 6.39 86.38 0.55 5.44 16 3 N -0.75 -38.26 5.54 -473.40 -2.62 -40.88 16 4 C 0.59 37.18 7.50 84.71 0.64 37.82 16 5 O -0.68 -47.69 16.28 -4.85 -0.08 -47.77 16 6 C -1.09 -67.60 8.32 68.29 0.57 -67.03 16 7 S 1.48 87.36 12.78 -56.49 -0.72 86.64 16 8 O -1.02 -75.47 18.25 -148.98 -2.72 -78.19 16 9 C -0.42 -20.82 5.67 22.25 0.13 -20.70 16 10 C -0.11 -4.84 8.93 22.29 0.20 -4.64 16 11 C -0.11 -3.85 10.04 22.25 0.22 -3.62 16 12 C -0.11 -3.10 9.97 22.39 0.22 -2.88 16 13 C 0.13 4.12 6.30 38.18 0.24 4.36 16 14 N -0.65 -15.96 5.28 -306.34 -1.62 -17.58 16 15 C 0.56 15.81 7.60 86.70 0.66 16.47 16 16 O -0.55 -20.64 13.74 -4.02 -0.06 -20.69 16 17 C -0.13 -2.94 5.87 -20.08 -0.12 -3.06 16 18 C -0.11 -1.70 9.46 22.28 0.21 -1.49 16 19 C -0.08 -1.16 10.03 22.20 0.22 -0.93 16 20 C -0.08 -1.39 6.35 -20.14 -0.13 -1.52 16 21 C -0.19 -2.69 5.60 -18.65 -0.10 -2.79 16 22 C -0.05 -0.44 3.05 71.24 0.22 -0.22 16 23 O -0.57 -5.60 12.86 -148.98 -1.92 -7.52 16 24 Si 0.99 5.60 26.08 68.60 1.79 7.39 16 25 H -0.26 -1.94 7.11 99.48 0.71 -1.24 16 26 H -0.26 -1.84 7.03 99.48 0.70 -1.14 16 27 H -0.25 -1.35 7.11 99.48 0.71 -0.64 16 28 C 0.08 0.86 10.43 83.09 0.87 1.73 16 29 N -0.58 -7.38 6.07 -187.71 -1.14 -8.52 16 30 C 0.07 1.25 7.26 38.96 0.28 1.53 16 31 C -0.06 -1.41 9.61 22.63 0.22 -1.19 16 32 C -0.07 -3.11 8.40 22.40 0.19 -2.92 16 33 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.39 17.71 8.42 -92.70 -0.78 16.93 16 39 H 0.11 6.26 6.09 -7.38 -0.04 6.21 16 40 H 0.09 4.75 6.49 -2.91 -0.02 4.73 16 41 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 42 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 43 H 0.43 6.45 6.82 -92.71 -0.63 5.82 16 44 H 0.16 1.40 6.37 -2.92 -0.02 1.38 16 45 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 46 H 0.08 0.49 7.96 -2.39 -0.02 0.47 16 47 H 0.39 0.13 8.74 -74.06 -0.65 -0.52 16 48 H 0.20 0.85 6.29 -2.91 -0.02 0.83 16 49 H 0.43 3.10 8.96 -92.71 -0.83 2.27 16 50 H 0.13 3.02 7.62 -2.91 -0.02 3.00 16 51 H 0.14 5.87 6.22 -2.91 -0.02 5.85 16 Total: -1.00 -110.76 439.81 -4.18 -114.94 By element: Atomic # 1 Polarization: 62.25 SS G_CDS: -1.11 Total: 61.14 kcal Atomic # 6 Polarization: -54.97 SS G_CDS: 6.00 Total: -48.97 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: -5.38 Total: -66.97 kcal Atomic # 8 Polarization: -149.40 SS G_CDS: -4.77 Total: -154.17 kcal Atomic # 14 Polarization: 5.60 SS G_CDS: 1.79 Total: 7.39 kcal Atomic # 16 Polarization: 87.36 SS G_CDS: -0.72 Total: 86.64 kcal Total: -110.76 -4.18 -114.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704022_12335838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.072 kcal (2) G-P(sol) polarization free energy of solvation -110.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -114.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds