Wall clock time and date at job start Tue Mar 9 2021 13:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47318 * 2 1 4 4 C 1.34774 * 119.99965 * 180.02562 * 3 2 1 5 5 O 1.21859 * 120.00288 * 0.02562 * 4 3 2 6 6 C 1.40195 * 120.00032 * 179.97438 * 4 3 2 7 7 S 1.55351 * 120.00035 * 179.97438 * 6 4 3 8 8 O 1.52195 * 102.99902 * 286.87466 * 7 6 4 9 9 C 1.76199 * 102.99693 * 180.02562 * 7 6 4 10 10 C 1.38259 * 119.96913 * 29.97928 * 9 7 6 11 11 C 1.38299 * 120.14956 * 179.97438 * 10 9 7 12 12 C 1.38087 * 120.07142 * 359.72124 * 11 10 9 13 13 C 1.38906 * 119.92498 * 0.57986 * 12 11 10 14 14 N 1.39869 * 120.07393 * 179.69687 * 13 12 11 15 15 C 1.34771 * 120.00223 * 214.82025 * 14 13 12 16 16 O 1.21630 * 119.99961 * 355.37631 * 15 14 13 17 17 C 1.47347 * 120.00035 * 175.37885 * 15 14 13 18 18 C 1.36434 * 127.19332 * 179.97438 * 17 15 14 19 19 C 1.50703 * 125.80261 * 0.02944 * 18 17 15 20 20 O 1.33664 * 108.39438 * 180.02562 * 18 17 15 21 21 C 1.34213 * 110.90935 * 359.97438 * 20 18 17 22 22 C 1.50697 * 125.43730 * 180.02562 * 21 20 18 23 23 O 1.42900 * 109.46966 * 119.97589 * 22 21 20 24 24 Si 1.86305 * 109.47030 * 359.97438 * 22 21 20 25 25 H 1.48497 * 109.46899 * 59.99776 * 24 22 21 26 26 H 1.48493 * 109.47199 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47058 * 299.99946 * 24 22 21 28 28 C 1.34174 * 109.12653 * 0.02562 * 21 20 18 29 29 C 1.38136 * 119.96200 * 210.00172 * 9 7 6 30 30 H 1.08996 * 109.47347 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47135 * 299.99843 * 1 2 3 32 32 H 1.08998 * 109.47018 * 59.99833 * 1 2 3 33 33 H 1.09006 * 109.46852 * 239.99690 * 2 1 3 34 34 H 1.08998 * 109.47018 * 120.00167 * 2 1 3 35 35 H 0.97004 * 119.99929 * 359.97438 * 3 2 1 36 36 H 1.08005 * 119.99473 * 0.02562 * 6 4 3 37 37 H 1.08011 * 119.92577 * 359.97438 * 10 9 7 38 38 H 1.07999 * 119.96498 * 180.02562 * 11 10 9 39 39 H 1.08007 * 120.03943 * 180.29756 * 12 11 10 40 40 H 0.96999 * 119.99652 * 34.81777 * 14 13 12 41 41 H 1.09004 * 109.46741 * 180.02562 * 19 18 17 42 42 H 1.08996 * 109.47407 * 300.02791 * 19 18 17 43 43 H 1.09005 * 109.46934 * 60.03233 * 19 18 17 44 44 H 1.09004 * 109.47392 * 239.97684 * 22 21 20 45 45 H 0.96695 * 114.00157 * 300.00392 * 23 22 21 46 46 H 1.07998 * 127.02443 * 179.73817 * 28 21 20 47 47 H 1.07993 * 120.03845 * 0.02562 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 -0.0005 5 8 4.1353 0.7012 -0.0015 6 6 3.8108 2.9492 -0.0011 7 16 5.3382 3.2330 -0.0011 8 8 5.7533 2.8729 1.4182 9 6 5.4141 4.9933 -0.0011 10 6 4.4074 5.7280 0.5974 11 6 4.4635 7.1099 0.6001 12 6 5.5289 7.7603 0.0095 13 6 6.5389 7.0253 -0.5981 14 7 7.6162 7.6810 -1.2028 15 6 8.1789 7.1685 -2.3150 16 8 7.8061 6.0936 -2.7451 17 6 9.2458 7.9102 -3.0098 18 6 9.9129 7.5319 -4.1382 19 6 9.6861 6.2583 -4.9113 20 8 10.8017 8.4830 -4.4415 21 6 10.7510 9.4871 -3.5524 22 6 11.6094 10.7253 -3.5828 23 8 10.7752 11.8806 -3.6902 24 14 12.7570 10.6495 -5.0485 25 1 11.9590 10.5694 -6.2983 26 1 13.6024 11.8699 -5.0789 27 1 13.6238 9.4490 -4.9368 28 6 9.8142 9.2124 -2.6320 29 6 6.4793 5.6379 -0.5995 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.3880 2.1185 -0.0004 36 1 3.1089 3.7700 -0.0006 37 1 3.5752 5.2217 1.0640 38 1 3.6756 7.6809 1.0688 39 1 5.5746 8.8393 0.0161 40 1 7.9584 8.5047 -0.8216 41 1 10.3629 6.2263 -5.7652 42 1 9.8763 5.4019 -4.2646 43 1 8.6550 6.2258 -5.2636 44 1 12.1951 10.7841 -2.6654 45 1 10.2244 11.8956 -4.4848 46 1 9.5371 9.8214 -1.7842 47 1 7.2650 5.0635 -1.0675 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704022_13308374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:25:32 Heat of formation + Delta-G solvation = -178.571668 kcal Electronic energy + Delta-G solvation = -32999.648561 eV Core-core repulsion = 28238.950260 eV Total energy + Delta-G solvation = -4760.698301 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 393.117 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.76217 -41.38807 -39.88945 -39.32338 -37.93786 -35.91582 -35.81220 -34.18866 -33.83340 -33.07733 -31.97343 -31.74814 -30.83461 -29.33079 -28.92047 -26.01500 -24.71028 -24.17769 -23.52065 -23.24951 -21.88252 -21.44307 -20.72717 -19.23728 -18.79784 -18.00800 -17.70569 -17.60069 -17.51929 -17.03885 -16.79222 -16.36222 -16.29860 -16.13495 -16.00474 -15.75682 -15.35729 -15.23829 -14.96401 -14.64387 -14.57423 -14.41929 -14.38647 -14.14789 -13.94343 -13.81421 -13.72065 -13.37440 -13.13451 -12.84406 -12.81246 -12.71612 -12.68521 -12.66126 -12.40976 -12.29038 -12.17020 -11.99731 -11.47612 -11.03726 -10.89324 -10.52814 -10.49844 -10.32215 -9.92652 -9.80362 -9.59318 -9.20370 -9.03656 -7.69779 0.02353 0.27369 0.45216 0.88202 1.12998 1.39003 1.53202 1.73939 1.79902 1.97060 2.04951 2.18956 2.69089 2.77784 3.00008 3.26011 3.33726 3.53837 3.67371 3.81859 3.96402 4.11460 4.14416 4.15585 4.19437 4.26831 4.38541 4.46442 4.49524 4.53229 4.57988 4.64200 4.67200 4.69332 4.78262 4.86060 4.88703 5.02430 5.14181 5.20216 5.22952 5.24758 5.30290 5.36743 5.40828 5.54237 5.80554 5.90701 6.02971 6.03641 6.40561 6.61927 7.09035 7.10120 8.05494 Molecular weight = 393.12amu Principal moments of inertia in cm(-1) A = 0.017953 B = 0.001626 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.239881 B =17211.974718 C =18059.606141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.116 3.884 3 N -0.754 5.754 4 C 0.587 3.413 5 O -0.681 6.681 6 C -1.092 5.092 7 S 1.479 4.521 8 O -1.018 7.018 9 C -0.418 4.418 10 C -0.105 4.105 11 C -0.115 4.115 12 C -0.113 4.113 13 C 0.127 3.873 14 N -0.650 5.650 15 C 0.583 3.417 16 O -0.547 6.547 17 C -0.267 4.267 18 C 0.093 3.907 19 C -0.081 4.081 20 O -0.175 6.175 21 C -0.062 4.062 22 C -0.033 4.033 23 O -0.537 6.537 24 Si 0.991 3.009 25 H -0.263 1.263 26 H -0.250 1.250 27 H -0.266 1.266 28 C -0.143 4.143 29 C -0.071 4.071 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.029 0.971 35 H 0.395 0.605 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.155 0.845 39 H 0.172 0.828 40 H 0.427 0.573 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.155 0.845 45 H 0.393 0.607 46 H 0.183 0.817 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.784 23.328 -14.581 29.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.009 4.009 3 N -0.406 5.406 4 C 0.395 3.605 5 O -0.578 6.578 6 C -1.224 5.224 7 S 1.686 4.314 8 O -1.014 7.014 9 C -0.515 4.515 10 C -0.125 4.125 11 C -0.135 4.135 12 C -0.133 4.133 13 C 0.032 3.968 14 N -0.296 5.296 15 C 0.374 3.626 16 O -0.426 6.426 17 C -0.271 4.271 18 C 0.040 3.960 19 C -0.137 4.137 20 O -0.072 6.072 21 C -0.110 4.110 22 C -0.143 4.143 23 O -0.344 6.344 24 Si 0.813 3.187 25 H -0.187 1.187 26 H -0.173 1.173 27 H -0.190 1.190 28 C -0.162 4.162 29 C -0.092 4.092 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.228 0.772 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.172 0.828 39 H 0.190 0.810 40 H 0.266 0.734 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.173 0.827 45 H 0.243 0.757 46 H 0.200 0.800 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.792 21.478 -15.285 29.751 hybrid contribution -3.005 1.024 2.160 3.839 sum 10.787 22.502 -13.125 28.195 Atomic orbital electron populations 1.21886 0.91237 1.04185 1.02765 1.21169 0.96407 0.83668 0.99623 1.45658 1.06633 1.07824 1.80518 1.15538 0.81987 0.88155 0.74835 1.90553 1.56483 1.48508 1.62239 1.26864 1.21002 1.00812 1.73757 1.65829 0.84098 0.78195 1.03320 1.94353 1.84975 1.81713 1.40398 1.27943 0.99490 1.20840 1.03217 1.21203 0.97719 0.95741 0.97835 1.21332 0.99320 0.92994 0.99828 1.21265 0.91728 1.01214 0.99078 1.17788 0.89953 0.91035 0.97989 1.43015 1.31767 1.28253 1.26571 1.17637 0.80953 0.84477 0.79510 1.90829 1.63038 1.22068 1.66658 1.20972 1.04847 0.99749 1.01572 1.23163 0.87360 0.91051 0.94434 1.20644 1.04504 0.88516 1.00016 1.83690 1.49904 1.26244 1.47409 1.23106 1.03419 0.92613 0.91848 1.24476 0.96317 0.79081 1.14458 1.86539 1.59330 1.38756 1.49796 0.85043 0.77913 0.80221 0.75490 1.18655 1.17306 1.19047 1.22818 0.97336 0.94388 1.01689 1.20893 0.97235 0.93948 0.97166 0.88848 0.92041 0.91129 0.93639 0.95268 0.77190 0.87640 0.88788 0.82763 0.81026 0.73381 0.88014 0.88619 0.88553 0.82725 0.75668 0.79998 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 10.03 71.98 0.72 -3.28 16 2 C 0.12 4.82 6.39 86.38 0.55 5.37 16 3 N -0.75 -37.86 5.54 -473.39 -2.62 -40.48 16 4 C 0.59 36.81 7.50 84.72 0.64 37.44 16 5 O -0.68 -47.18 16.28 -4.86 -0.08 -47.26 16 6 C -1.09 -66.91 8.32 68.30 0.57 -66.34 16 7 S 1.48 86.08 12.78 -56.49 -0.72 85.36 16 8 O -1.02 -74.63 18.25 -148.98 -2.72 -77.35 16 9 C -0.42 -20.43 5.67 22.25 0.13 -20.31 16 10 C -0.11 -4.78 8.93 22.29 0.20 -4.58 16 11 C -0.12 -3.84 10.04 22.25 0.22 -3.62 16 12 C -0.11 -3.13 9.97 22.39 0.22 -2.91 16 13 C 0.13 4.10 6.30 38.17 0.24 4.34 16 14 N -0.65 -15.69 5.33 -306.50 -1.63 -17.32 16 15 C 0.58 15.74 7.66 86.64 0.66 16.40 16 16 O -0.55 -18.65 13.09 -4.13 -0.05 -18.71 16 17 C -0.27 -5.56 6.31 -19.00 -0.12 -5.68 16 18 C 0.09 1.80 7.37 25.27 0.19 1.98 16 19 C -0.08 -1.34 9.14 71.24 0.65 -0.69 16 20 O -0.18 -2.90 8.89 4.38 0.04 -2.86 16 21 C -0.06 -0.83 6.20 24.76 0.15 -0.67 16 22 C -0.03 -0.26 2.97 71.23 0.21 -0.05 16 23 O -0.54 -4.20 12.86 -148.98 -1.92 -6.12 16 24 Si 0.99 8.48 27.37 68.60 1.88 10.36 16 25 H -0.26 -2.81 7.11 99.48 0.71 -2.10 16 26 H -0.25 -2.23 7.11 99.48 0.71 -1.52 16 27 H -0.27 -3.16 7.11 99.48 0.71 -2.46 16 28 C -0.14 -2.08 10.46 23.65 0.25 -1.83 16 29 C -0.07 -2.94 8.40 22.40 0.19 -2.76 16 30 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.39 17.51 8.42 -92.71 -0.78 16.72 16 36 H 0.11 6.18 6.09 -7.37 -0.04 6.13 16 37 H 0.09 4.69 6.48 -2.91 -0.02 4.67 16 38 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 39 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 40 H 0.43 6.65 8.00 -92.71 -0.74 5.91 16 41 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.10 1.75 8.08 -2.39 -0.02 1.73 16 43 H 0.10 1.71 8.08 -2.38 -0.02 1.69 16 44 H 0.16 0.64 7.96 -2.38 -0.02 0.62 16 45 H 0.39 0.85 8.70 -74.06 -0.64 0.21 16 46 H 0.18 1.67 7.74 -2.91 -0.02 1.65 16 47 H 0.14 5.75 6.22 -2.91 -0.02 5.73 16 Total: -1.00 -103.43 414.14 -2.53 -105.96 By element: Atomic # 1 Polarization: 55.97 SS G_CDS: -0.37 Total: 55.60 kcal Atomic # 6 Polarization: -52.85 SS G_CDS: 5.67 Total: -47.18 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -4.26 Total: -57.80 kcal Atomic # 8 Polarization: -147.56 SS G_CDS: -4.73 Total: -152.29 kcal Atomic # 14 Polarization: 8.48 SS G_CDS: 1.88 Total: 10.36 kcal Atomic # 16 Polarization: 86.08 SS G_CDS: -0.72 Total: 85.36 kcal Total: -103.43 -2.53 -105.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704022_13308374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.613 kcal (2) G-P(sol) polarization free energy of solvation -103.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds