Wall clock time and date at job start Tue Mar 9 2021 13:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47018 * 2 1 4 4 C 1.34778 * 119.99978 * 179.97438 * 3 2 1 5 5 O 1.21860 * 120.00056 * 0.02562 * 4 3 2 6 6 C 1.40194 * 119.99941 * 179.97438 * 4 3 2 7 7 S 1.55360 * 119.99784 * 180.02562 * 6 4 3 8 8 O 1.52199 * 102.99741 * 286.87296 * 7 6 4 9 9 C 1.76199 * 102.99565 * 180.02562 * 7 6 4 10 10 C 1.38259 * 119.96790 * 29.97742 * 9 7 6 11 11 C 1.38309 * 120.14683 * 180.02562 * 10 9 7 12 12 C 1.38085 * 120.06941 * 359.68447 * 11 10 9 13 13 C 1.38906 * 119.92881 * 0.61438 * 12 11 10 14 14 N 1.39856 * 120.07664 * 179.68255 * 13 12 11 15 15 C 1.34776 * 120.00522 * 146.40661 * 14 13 12 16 16 O 1.21598 * 119.99394 * 354.71472 * 15 14 13 17 17 C 1.47508 * 120.00039 * 174.71465 * 15 14 13 18 18 C 1.39673 * 120.19167 * 359.97438 * 17 15 14 19 19 C 1.37835 * 119.90624 * 180.02562 * 18 17 15 20 20 C 1.38501 * 120.29677 * 359.97438 * 19 18 17 21 21 C 1.50701 * 119.79844 * 180.02562 * 20 19 18 22 22 O 1.42905 * 109.46900 * 120.00535 * 21 20 19 23 23 Si 1.86292 * 109.47326 * 0.02562 * 21 20 19 24 24 H 1.48495 * 109.47437 * 60.00177 * 23 21 20 25 25 H 1.48503 * 109.46929 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47197 * 299.99446 * 23 21 20 27 27 C 1.38100 * 120.39584 * 359.76467 * 20 19 18 28 28 C 1.38661 * 120.08520 * 0.51721 * 27 20 19 29 29 O 1.35662 * 120.15181 * 179.73733 * 28 27 20 30 30 C 1.38132 * 119.96061 * 209.99959 * 9 7 6 31 31 H 1.09005 * 109.47106 * 60.00016 * 1 2 3 32 32 H 1.09004 * 109.47092 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47317 * 300.00086 * 1 2 3 34 34 H 1.08998 * 109.47580 * 240.00396 * 2 1 3 35 35 H 1.09000 * 109.47464 * 119.99676 * 2 1 3 36 36 H 0.97001 * 120.00059 * 0.02562 * 3 2 1 37 37 H 1.07995 * 119.99936 * 0.02562 * 6 4 3 38 38 H 1.08003 * 119.92884 * 0.02562 * 10 9 7 39 39 H 1.08000 * 119.96236 * 179.97438 * 11 10 9 40 40 H 1.08001 * 120.03397 * 180.31872 * 12 11 10 41 41 H 0.96997 * 119.99345 * 326.40670 * 14 13 12 42 42 H 1.08008 * 120.05041 * 0.04300 * 18 17 15 43 43 H 1.07995 * 119.84873 * 180.02562 * 19 18 17 44 44 H 1.09007 * 109.46900 * 239.99813 * 21 20 19 45 45 H 0.96698 * 113.99956 * 299.99434 * 22 21 20 46 46 H 1.07997 * 119.95884 * 180.25519 * 27 20 19 47 47 H 0.96701 * 113.99673 * 269.72346 * 29 28 27 48 48 H 1.07999 * 120.03530 * 0.02562 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6275 0.0005 5 8 4.1353 0.7013 0.0005 6 6 3.8106 2.9493 0.0000 7 16 5.3381 3.2332 0.0000 8 8 5.7532 2.8731 1.4193 9 6 5.4139 4.9935 0.0000 10 6 4.4071 5.7282 0.5984 11 6 4.4627 7.1102 0.6001 12 6 5.5279 7.7605 0.0094 13 6 6.5380 7.0256 -0.5982 14 7 7.6150 7.6813 -1.2033 15 6 8.8412 7.1223 -1.1843 16 8 9.0321 6.0966 -0.5597 17 6 9.9516 7.7547 -1.9211 18 6 9.7366 8.9326 -2.6403 19 6 10.7783 9.5183 -3.3271 20 6 12.0386 8.9444 -3.3073 21 6 13.1696 9.5946 -4.0618 22 8 14.2146 9.9388 -3.1499 23 14 12.5489 11.1356 -4.9046 24 1 12.0259 12.0807 -3.8856 25 1 13.6633 11.7759 -5.6485 26 1 11.4627 10.7784 -5.8521 27 6 12.2663 7.7828 -2.5959 28 6 11.2287 7.1768 -1.9040 29 8 11.4496 6.0328 -1.2091 30 6 6.4791 5.6381 -0.5984 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5137 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.3879 2.1185 0.0004 37 1 3.1088 3.7701 -0.0004 38 1 3.5754 5.2218 1.0657 39 1 3.6744 7.6811 1.0681 40 1 5.5733 8.8395 0.0155 41 1 7.4794 8.5384 -1.6367 42 1 8.7556 9.3841 -2.6580 43 1 10.6111 10.4293 -3.8825 44 1 13.5538 8.9007 -4.8095 45 1 13.9436 10.5548 -2.4555 46 1 13.2528 7.3436 -2.5819 47 1 11.3084 5.2264 -1.7238 48 1 7.2648 5.0637 -1.0664 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704022_13422076.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:25:47 Heat of formation + Delta-G solvation = -205.021505 kcal Electronic energy + Delta-G solvation = -34408.692792 eV Core-core repulsion = 29518.621400 eV Total energy + Delta-G solvation = -4890.071392 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 405.117 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.95971 -40.64908 -39.89249 -39.24020 -38.35372 -37.10709 -35.87670 -35.81414 -33.86312 -33.01829 -31.98946 -31.73007 -31.09205 -30.59527 -29.01477 -27.39273 -24.57824 -24.04363 -23.85653 -23.52188 -22.83651 -21.53302 -21.33319 -19.82860 -19.02776 -18.63485 -18.24974 -17.65737 -17.58107 -17.07078 -16.85290 -16.47524 -16.32432 -16.30395 -16.17755 -16.10628 -15.97556 -15.42412 -15.35217 -15.14227 -15.04957 -14.63476 -14.58103 -14.44343 -14.36372 -13.93299 -13.81183 -13.39338 -13.26047 -13.14558 -12.86781 -12.72566 -12.67028 -12.59527 -12.49581 -12.29815 -12.29230 -12.05380 -11.96961 -11.52356 -11.45309 -10.92022 -10.54489 -10.44603 -10.32849 -10.02566 -9.93358 -9.80652 -9.77402 -9.15755 -9.09551 -7.71226 -0.45565 0.17314 0.19057 0.37635 1.22862 1.57919 1.61492 1.69886 1.76033 1.94421 2.01146 2.53419 2.69776 2.78920 2.99969 3.18224 3.33814 3.43697 3.60694 3.66321 3.83017 3.94555 4.06613 4.10950 4.15560 4.19340 4.25175 4.30564 4.38653 4.49468 4.49918 4.54461 4.61082 4.70767 4.78946 4.81974 4.88716 5.02408 5.03877 5.14156 5.15293 5.23622 5.25967 5.28203 5.35493 5.40805 5.53101 5.63719 5.80544 6.02291 6.02765 6.37695 6.73439 6.78006 7.08460 7.10296 8.05406 Molecular weight = 405.12amu Principal moments of inertia in cm(-1) A = 0.016833 B = 0.001500 C = 0.001452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.004234 B =18657.699140 C =19280.079610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.116 3.884 3 N -0.754 5.754 4 C 0.587 3.413 5 O -0.682 6.682 6 C -1.091 5.091 7 S 1.479 4.521 8 O -1.021 7.021 9 C -0.417 4.417 10 C -0.106 4.106 11 C -0.115 4.115 12 C -0.113 4.113 13 C 0.129 3.871 14 N -0.650 5.650 15 C 0.549 3.451 16 O -0.542 6.542 17 C -0.179 4.179 18 C -0.051 4.051 19 C -0.142 4.142 20 C -0.069 4.069 21 C -0.091 4.091 22 O -0.552 6.552 23 Si 0.990 3.010 24 H -0.245 1.245 25 H -0.275 1.275 26 H -0.247 1.247 27 C -0.132 4.132 28 C 0.157 3.843 29 O -0.501 6.501 30 C -0.071 4.071 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.027 0.973 36 H 0.395 0.605 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.155 0.845 40 H 0.175 0.825 41 H 0.429 0.571 42 H 0.167 0.833 43 H 0.156 0.844 44 H 0.130 0.870 45 H 0.390 0.610 46 H 0.144 0.856 47 H 0.410 0.590 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.757 24.993 -17.714 32.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.009 4.009 3 N -0.406 5.406 4 C 0.395 3.605 5 O -0.579 6.579 6 C -1.223 5.223 7 S 1.685 4.315 8 O -1.017 7.017 9 C -0.514 4.514 10 C -0.126 4.126 11 C -0.134 4.134 12 C -0.133 4.133 13 C 0.034 3.966 14 N -0.298 5.298 15 C 0.339 3.661 16 O -0.419 6.419 17 C -0.183 4.183 18 C -0.069 4.069 19 C -0.160 4.160 20 C -0.069 4.069 21 C -0.200 4.200 22 O -0.360 6.360 23 Si 0.812 3.188 24 H -0.168 1.168 25 H -0.200 1.200 26 H -0.170 1.170 27 C -0.151 4.151 28 C 0.111 3.889 29 O -0.314 6.314 30 C -0.093 4.093 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.229 0.771 37 H 0.126 0.874 38 H 0.112 0.888 39 H 0.173 0.827 40 H 0.193 0.807 41 H 0.270 0.730 42 H 0.185 0.815 43 H 0.173 0.827 44 H 0.148 0.852 45 H 0.240 0.760 46 H 0.162 0.838 47 H 0.270 0.730 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 12.293 23.715 -17.605 31.991 hybrid contribution -2.547 0.468 2.221 3.411 sum 9.746 24.183 -15.384 30.273 Atomic orbital electron populations 1.21885 0.91203 1.04178 1.02792 1.21168 0.96427 0.83689 0.99595 1.45652 1.06613 1.07814 1.80502 1.15553 0.81990 0.88169 0.74835 1.90557 1.56519 1.48560 1.62244 1.26855 1.20965 1.00821 1.73699 1.65719 0.84003 0.78211 1.03521 1.94373 1.85143 1.81792 1.40410 1.27915 0.99138 1.20833 1.03534 1.21201 0.97592 0.95798 0.98006 1.21350 0.99486 0.92943 0.99609 1.21281 0.93472 1.01407 0.97154 1.17765 0.89689 0.91158 0.97990 1.43146 1.05655 1.24675 1.56314 1.18718 0.82773 0.84296 0.80328 1.90909 1.83321 1.25372 1.42341 1.20249 0.92784 1.00484 1.04764 1.21474 1.01080 0.91762 0.92606 1.21238 0.92084 1.01443 1.01196 1.20655 0.95805 0.94183 0.96297 1.25336 0.89486 1.09213 0.96010 1.86505 1.35860 1.68759 1.44839 0.85117 0.78888 0.75230 0.79567 1.16786 1.20050 1.17039 1.21327 0.99272 0.97084 0.97380 1.18826 0.90932 0.88815 0.90345 1.84724 1.90732 1.15262 1.40727 1.20743 0.96019 0.94052 0.98482 0.91027 0.88887 0.92075 0.93579 0.95408 0.77143 0.87429 0.88809 0.82695 0.80717 0.72999 0.81538 0.82660 0.85191 0.76043 0.83813 0.72994 0.84861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 10.03 71.98 0.72 -3.22 16 2 C 0.12 4.78 6.39 86.38 0.55 5.33 16 3 N -0.75 -37.48 5.54 -473.39 -2.62 -40.10 16 4 C 0.59 36.58 7.50 84.72 0.64 37.22 16 5 O -0.68 -47.22 16.28 -4.86 -0.08 -47.30 16 6 C -1.09 -66.28 8.32 68.30 0.57 -65.71 16 7 S 1.48 86.22 12.78 -56.49 -0.72 85.50 16 8 O -1.02 -76.59 18.25 -148.98 -2.72 -79.31 16 9 C -0.42 -20.37 5.67 22.25 0.13 -20.25 16 10 C -0.11 -4.81 8.93 22.29 0.20 -4.61 16 11 C -0.11 -3.75 10.04 22.25 0.22 -3.53 16 12 C -0.11 -3.04 9.96 22.39 0.22 -2.82 16 13 C 0.13 4.06 6.28 38.17 0.24 4.30 16 14 N -0.65 -14.64 5.28 -306.37 -1.62 -16.26 16 15 C 0.55 15.10 7.50 86.69 0.65 15.75 16 16 O -0.54 -20.86 12.85 16.89 0.22 -20.64 16 17 C -0.18 -3.56 5.89 -20.01 -0.12 -3.68 16 18 C -0.05 -0.55 9.53 22.52 0.21 -0.34 16 19 C -0.14 -1.21 8.64 22.24 0.19 -1.02 16 20 C -0.07 -0.73 5.40 -19.83 -0.11 -0.83 16 21 C -0.09 -0.66 2.82 71.24 0.20 -0.46 16 22 O -0.55 -5.28 12.76 -148.98 -1.90 -7.18 16 23 Si 0.99 5.09 25.05 68.60 1.72 6.81 16 24 H -0.24 -1.09 7.11 99.48 0.71 -0.38 16 25 H -0.28 -2.43 7.11 99.48 0.71 -1.72 16 26 H -0.25 -1.27 7.11 99.48 0.71 -0.57 16 27 C -0.13 -2.04 9.52 22.34 0.21 -1.83 16 28 C 0.16 3.31 6.72 22.85 0.15 3.47 16 29 O -0.50 -12.86 11.58 -68.87 -0.80 -13.66 16 30 C -0.07 -2.95 8.36 22.40 0.19 -2.76 16 31 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.40 17.27 8.42 -92.71 -0.78 16.49 16 37 H 0.11 6.20 6.09 -7.38 -0.04 6.16 16 38 H 0.09 4.67 6.49 -2.91 -0.02 4.65 16 39 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 40 H 0.18 2.76 8.06 -2.91 -0.02 2.73 16 41 H 0.43 5.04 6.86 -92.71 -0.64 4.40 16 42 H 0.17 0.59 6.42 -2.91 -0.02 0.57 16 43 H 0.16 0.49 4.85 -2.91 -0.01 0.48 16 44 H 0.13 0.73 7.96 -2.38 -0.02 0.71 16 45 H 0.39 1.29 8.70 -74.06 -0.64 0.64 16 46 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 47 H 0.41 7.79 9.06 -74.06 -0.67 7.12 16 48 H 0.13 5.47 6.41 -2.91 -0.02 5.45 16 Total: -1.00 -111.61 415.33 -4.36 -115.97 By element: Atomic # 1 Polarization: 62.07 SS G_CDS: -0.91 Total: 61.15 kcal Atomic # 6 Polarization: -50.06 SS G_CDS: 5.08 Total: -44.99 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -4.24 Total: -56.36 kcal Atomic # 8 Polarization: -162.81 SS G_CDS: -5.28 Total: -168.09 kcal Atomic # 14 Polarization: 5.09 SS G_CDS: 1.72 Total: 6.81 kcal Atomic # 16 Polarization: 86.22 SS G_CDS: -0.72 Total: 85.50 kcal Total: -111.61 -4.36 -115.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704022_13422076.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.048 kcal (2) G-P(sol) polarization free energy of solvation -111.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -115.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds