Wall clock time and date at job start Tue Mar 9 2021 13:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46735 * 2 1 4 4 C 1.50698 * 109.47563 * 239.99658 * 2 1 3 5 5 C 1.37851 * 119.89078 * 300.00220 * 4 2 1 6 6 C 1.39658 * 119.87659 * 179.97438 * 5 4 2 7 7 C 1.47690 * 120.16849 * 179.97438 * 6 5 4 8 8 O 1.21574 * 120.00470 * 180.02562 * 7 6 5 9 9 N 1.34784 * 119.99835 * 0.02562 * 7 6 5 10 10 C 1.46493 * 119.99864 * 179.72591 * 9 7 6 11 11 H 1.09000 * 112.85483 * 334.66378 * 10 9 7 12 12 C 1.53777 * 113.61833 * 105.86275 * 10 9 7 13 13 C 1.54054 * 86.98542 * 89.15903 * 12 10 9 14 14 H 1.09000 * 113.68870 * 270.87285 * 13 12 10 15 15 C 1.50706 * 113.61760 * 139.98265 * 13 12 10 16 16 C 1.38234 * 119.99822 * 322.23173 * 15 13 12 17 17 C 1.38233 * 119.99652 * 179.77095 * 16 15 13 18 18 C 1.38238 * 120.00160 * 0.50270 * 17 16 15 19 19 C 1.50693 * 120.00173 * 179.72632 * 18 17 16 20 20 F 1.39902 * 109.47560 * 270.02302 * 19 18 17 21 21 F 1.39904 * 109.47212 * 30.02248 * 19 18 17 22 22 F 1.39906 * 109.47313 * 150.02085 * 19 18 17 23 23 C 1.38238 * 119.99682 * 359.74726 * 18 17 16 24 24 C 1.38236 * 119.99557 * 142.50407 * 15 13 12 25 25 C 1.53777 * 87.07820 * 25.43361 * 13 12 10 26 26 C 1.39829 * 119.67061 * 0.25820 * 6 5 4 27 27 F 1.35096 * 120.11639 * 179.72558 * 26 6 5 28 28 C 1.38322 * 119.77341 * 359.46473 * 26 6 5 29 29 C 1.38203 * 120.11881 * 0.53402 * 28 26 6 30 30 H 0.96694 * 114.00700 * 300.00131 * 1 2 3 31 31 H 1.09003 * 109.46709 * 119.99771 * 2 1 3 32 32 H 1.48507 * 109.99581 * 178.67709 * 3 2 1 33 33 H 1.48497 * 109.99823 * 299.99599 * 3 2 1 34 34 H 1.07996 * 120.06367 * 0.02562 * 5 4 2 35 35 H 0.97000 * 119.99339 * 359.97438 * 9 7 6 36 36 H 1.09001 * 113.61733 * 203.66099 * 12 10 9 37 37 H 1.09003 * 113.61313 * 334.56504 * 12 10 9 38 38 H 1.07998 * 120.00182 * 0.02562 * 16 15 13 39 39 H 1.07998 * 120.00013 * 180.22717 * 17 16 15 40 40 H 1.08003 * 119.99924 * 179.97438 * 23 18 17 41 41 H 1.07996 * 120.00559 * 0.02562 * 24 15 13 42 42 H 1.08998 * 113.61800 * 220.02412 * 25 13 12 43 43 H 1.08999 * 113.61311 * 89.11809 * 25 13 12 44 44 H 1.08002 * 119.94345 * 180.27905 * 28 26 6 45 45 H 1.08008 * 119.83132 * 179.72359 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9315 -0.7104 -1.2304 5 6 1.5971 -2.0303 -1.4462 6 6 2.0624 -2.6882 -2.5868 7 6 1.7086 -4.1023 -2.8242 8 8 2.1157 -4.6723 -3.8179 9 7 0.9343 -4.7610 -1.9392 10 6 0.5784 -6.1618 -2.1777 11 1 0.5992 -6.4300 -3.2340 12 6 1.3344 -7.1517 -1.2759 13 6 0.1880 -6.9775 -0.2617 14 1 0.3450 -6.1587 0.4403 15 6 -0.2179 -8.2605 0.4170 16 6 -0.2361 -9.4442 -0.2968 17 6 -0.6038 -10.6217 0.3270 18 6 -0.9634 -10.6138 1.6617 19 6 -1.3702 -11.8965 2.3401 20 9 -2.7516 -12.0751 2.2101 21 9 -0.7028 -12.9716 1.7434 22 9 -1.0337 -11.8337 3.6966 23 6 -0.9501 -9.4292 2.3741 24 6 -0.5774 -8.2525 1.7517 25 6 -0.7059 -6.6027 -1.4556 26 6 2.8700 -2.0032 -3.5000 27 9 3.3297 -2.6326 -4.6035 28 6 3.1921 -0.6774 -3.2724 29 6 2.7266 -0.0351 -2.1407 30 1 -0.3934 0.4417 0.7649 31 1 1.7923 -0.5138 0.8900 32 1 3.5346 1.7704 0.0322 33 1 1.5614 2.4679 -1.2085 34 1 0.9758 -2.5542 -0.7351 35 1 0.6098 -4.3062 -1.1462 36 1 1.4011 -8.1574 -1.6910 37 1 2.2938 -6.7745 -0.9216 38 1 0.0410 -9.4497 -1.3406 39 1 -0.6145 -11.5471 -0.2297 40 1 -1.2315 -9.4229 3.4168 41 1 -0.5679 -7.3269 2.3081 42 1 -1.3926 -5.7825 -1.2463 43 1 -1.1960 -7.4585 -1.9197 44 1 3.8119 -0.1444 -3.9782 45 1 2.9847 0.9989 -1.9654 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705038_12335834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:30:17 Heat of formation + Delta-G solvation = -170.085957 kcal Electronic energy + Delta-G solvation = -35581.679505 eV Core-core repulsion = 30031.391129 eV Total energy + Delta-G solvation = -5550.288376 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.114 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -51.22709 -50.13889 -48.75251 -48.70276 -41.84708 -40.96228 -40.01907 -38.89491 -37.42471 -35.01769 -33.22778 -32.57562 -32.21531 -31.96730 -27.96029 -26.73635 -26.62749 -25.92773 -24.91251 -24.04288 -23.25008 -22.34665 -21.71054 -20.29547 -19.58843 -19.52581 -19.41893 -19.18905 -18.65107 -18.26686 -17.82318 -17.35353 -17.00872 -16.70314 -16.45828 -16.35426 -15.99977 -15.91455 -15.82850 -15.54574 -15.51259 -15.43639 -15.16467 -15.02675 -14.93109 -14.86712 -14.64055 -14.55919 -14.46670 -14.32610 -14.10406 -14.08406 -13.94647 -13.52941 -13.42648 -13.24958 -12.80044 -12.67495 -12.49937 -12.37584 -11.99806 -11.92001 -11.81812 -11.27193 -11.24594 -10.55214 -10.38259 -10.18455 -10.05114 -9.93642 -9.86525 -4.90450 -0.65810 -0.16505 -0.12963 0.28018 1.31337 1.47935 1.62450 1.68955 1.83716 1.99755 2.33843 2.41461 2.69322 2.89611 2.97095 3.23561 3.26898 3.35676 3.38784 3.46122 3.61631 3.64603 3.68180 3.82189 3.89056 3.89443 3.93323 4.07419 4.17885 4.25644 4.31473 4.38961 4.50238 4.57619 4.66068 4.67658 4.68358 4.75831 4.76103 4.82383 4.84210 4.99448 5.00756 5.01362 5.09718 5.19230 5.19493 5.40826 5.44125 5.59086 5.78175 6.30090 6.95493 6.98873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.069 4.069 3 Si 0.761 3.239 4 C -0.100 4.100 5 C -0.018 4.018 6 C -0.183 4.183 7 C 0.559 3.441 8 O -0.568 6.568 9 N -0.688 5.688 10 C 0.111 3.889 11 H 0.085 0.915 12 C -0.143 4.143 13 C -0.067 4.067 14 H 0.123 0.877 15 C -0.038 4.038 16 C -0.122 4.122 17 C -0.078 4.078 18 C -0.203 4.203 19 C 0.506 3.494 20 F -0.184 7.184 21 F -0.183 7.183 22 F -0.182 7.182 23 C -0.077 4.077 24 C -0.115 4.115 25 C -0.122 4.122 26 C 0.134 3.866 27 F -0.133 7.133 28 C -0.155 4.155 29 C -0.075 4.075 30 H 0.408 0.592 31 H 0.112 0.888 32 H -0.286 1.286 33 H -0.298 1.298 34 H 0.173 0.827 35 H 0.417 0.583 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.149 0.851 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.160 0.840 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.161 0.839 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.303 7.442 7.936 11.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.180 4.180 3 Si 0.668 3.332 4 C -0.100 4.100 5 C -0.036 4.036 6 C -0.187 4.187 7 C 0.347 3.653 8 O -0.448 6.448 9 N -0.340 5.340 10 C 0.005 3.995 11 H 0.103 0.897 12 C -0.181 4.181 13 C -0.085 4.085 14 H 0.141 0.859 15 C -0.038 4.038 16 C -0.140 4.140 17 C -0.096 4.096 18 C -0.204 4.204 19 C 0.452 3.548 20 F -0.165 7.165 21 F -0.165 7.165 22 F -0.163 7.163 23 C -0.095 4.095 24 C -0.133 4.133 25 C -0.160 4.160 26 C 0.113 3.887 27 F -0.111 7.111 28 C -0.174 4.174 29 C -0.093 4.093 30 H 0.260 0.740 31 H 0.130 0.870 32 H -0.213 1.213 33 H -0.226 1.226 34 H 0.190 0.810 35 H 0.256 0.744 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.167 0.833 39 H 0.157 0.843 40 H 0.162 0.838 41 H 0.177 0.823 42 H 0.112 0.888 43 H 0.123 0.877 44 H 0.179 0.821 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.470 7.232 6.268 9.683 hybrid contribution 0.213 -0.968 -0.394 1.067 sum -1.257 6.264 5.874 8.679 Atomic orbital electron populations 1.86424 1.16495 1.82380 1.51780 1.24640 0.86411 1.10253 0.96656 0.94179 0.77685 0.76019 0.85363 1.19748 0.98656 0.94437 0.97153 1.21266 0.94794 0.93562 0.93974 1.20131 1.04872 0.94934 0.98772 1.18170 0.78499 0.85850 0.82779 1.90850 1.54693 1.69490 1.29751 1.45385 1.50972 1.12319 1.25372 1.21942 0.97182 0.80156 1.00188 0.89716 1.23625 0.97928 1.00291 0.96290 1.21763 0.96224 0.94844 0.95711 0.85885 1.20121 0.94899 0.95059 0.93753 1.21239 1.00129 0.91226 1.01361 1.21107 0.95777 1.00229 0.92523 1.20033 1.10964 0.92456 0.96934 1.18540 0.74593 0.85108 0.76591 1.93219 1.31604 1.96068 1.95652 1.93183 1.80577 1.59151 1.83567 1.93184 1.92168 1.96557 1.34403 1.21176 0.96381 0.91225 1.00711 1.21359 0.98888 0.98543 0.94472 1.23384 0.95258 1.02779 0.94560 1.18088 0.95410 0.91439 0.83730 1.91564 1.86438 1.82498 1.50628 1.21265 1.03478 0.92383 1.00230 1.21175 0.95850 0.99621 0.92637 0.74037 0.87049 1.21302 1.22556 0.81020 0.74417 0.88161 0.91206 0.83336 0.84281 0.83849 0.82271 0.88799 0.87703 0.82093 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 4.87 12.74 -148.98 -1.90 2.97 16 2 C -0.07 0.59 2.81 71.24 0.20 0.79 16 3 Si 0.76 -5.82 29.78 68.60 2.04 -3.78 16 4 C -0.10 0.22 5.42 -19.90 -0.11 0.11 16 5 C -0.02 0.05 9.09 22.52 0.20 0.25 16 6 C -0.18 -0.76 5.88 -20.05 -0.12 -0.88 16 7 C 0.56 3.64 7.77 86.74 0.67 4.32 16 8 O -0.57 -9.21 14.96 -3.95 -0.06 -9.27 16 9 N -0.69 1.69 5.21 -443.05 -2.31 -0.62 16 10 C 0.11 -0.32 4.29 45.52 0.20 -0.12 16 11 H 0.08 0.21 7.50 -2.39 -0.02 0.19 16 12 C -0.14 0.69 7.27 31.21 0.23 0.92 16 13 C -0.07 0.59 3.87 -10.92 -0.04 0.54 16 14 H 0.12 -1.54 8.09 -2.39 -0.02 -1.55 16 15 C -0.04 0.21 5.29 -19.86 -0.11 0.11 16 16 C -0.12 0.47 8.60 22.27 0.19 0.67 16 17 C -0.08 0.06 9.40 22.27 0.21 0.27 16 18 C -0.20 -0.22 5.45 -19.87 -0.11 -0.33 16 19 C 0.51 2.01 3.36 71.23 0.24 2.25 16 20 F -0.18 -1.07 17.30 44.97 0.78 -0.29 16 21 F -0.18 -1.01 16.46 44.97 0.74 -0.26 16 22 F -0.18 -0.89 16.46 44.97 0.74 -0.15 16 23 C -0.08 0.16 9.40 22.27 0.21 0.36 16 24 C -0.12 0.64 9.71 22.27 0.22 0.86 16 25 C -0.12 1.00 7.29 31.12 0.23 1.23 16 26 C 0.13 1.01 7.29 22.67 0.17 1.18 16 27 F -0.13 -1.83 15.55 44.97 0.70 -1.13 16 28 C -0.15 -0.41 10.01 22.28 0.22 -0.19 16 29 C -0.08 -0.01 8.66 22.31 0.19 0.18 16 30 H 0.41 -7.55 8.74 -74.06 -0.65 -8.20 16 31 H 0.11 -1.56 7.96 -2.39 -0.02 -1.58 16 32 H -0.29 0.60 7.11 99.48 0.71 1.30 16 33 H -0.30 -0.19 7.11 99.48 0.71 0.52 16 34 H 0.17 -1.70 6.40 -2.91 -0.02 -1.72 16 35 H 0.42 -3.94 6.74 -92.71 -0.62 -4.56 16 36 H 0.10 -0.52 6.33 -2.39 -0.02 -0.54 16 37 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.15 -1.05 6.68 -2.91 -0.02 -1.07 16 39 H 0.14 -0.32 7.60 -2.91 -0.02 -0.34 16 40 H 0.14 -0.60 7.60 -2.91 -0.02 -0.62 16 41 H 0.16 -1.74 8.05 -2.91 -0.02 -1.77 16 42 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 43 H 0.10 -0.86 7.71 -2.39 -0.02 -0.88 16 44 H 0.16 -0.16 8.06 -2.91 -0.02 -0.18 16 45 H 0.14 -0.24 4.86 -2.91 -0.01 -0.25 16 Total: 0.00 -25.94 392.17 3.50 -22.44 By element: Atomic # 1 Polarization: -22.30 SS G_CDS: -0.13 Total: -22.43 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 2.89 Total: 12.52 kcal Atomic # 7 Polarization: 1.69 SS G_CDS: -2.31 Total: -0.62 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -1.96 Total: -6.30 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 2.96 Total: -1.83 kcal Atomic # 14 Polarization: -5.82 SS G_CDS: 2.04 Total: -3.78 kcal Total: -25.94 3.50 -22.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705038_12335834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.647 kcal (2) G-P(sol) polarization free energy of solvation -25.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds