Wall clock time and date at job start Tue Mar 9 2021 13:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86300 * 109.46973 * 2 1 4 4 C 1.50702 * 109.47141 * 119.99463 * 2 1 3 5 5 C 1.34446 * 126.48428 * 254.97398 * 4 2 1 6 6 N 1.36570 * 109.98297 * 180.02562 * 5 4 2 7 7 C 1.37829 * 109.86159 * 0.02562 * 6 5 4 8 8 C 1.38640 * 133.37931 * 180.02562 * 7 6 5 9 9 C 1.39316 * 119.66968 * 179.97438 * 8 7 6 10 10 C 1.47575 * 119.83428 * 179.97438 * 9 8 7 11 11 O 1.21586 * 119.99964 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99900 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00109 * 179.97438 * 12 10 9 14 14 H 1.09000 * 112.90436 * 23.74379 * 13 12 10 15 15 C 1.53775 * 113.61590 * 154.99858 * 13 12 10 16 16 C 1.53781 * 87.08154 * 89.11639 * 15 13 12 17 17 H 1.08995 * 113.61537 * 270.80014 * 16 15 13 18 18 C 1.50700 * 113.61365 * 139.98192 * 16 15 13 19 19 C 1.38234 * 120.00260 * 119.99982 * 18 16 15 20 20 C 1.38234 * 120.00240 * 179.97438 * 19 18 16 21 21 C 1.38233 * 120.00037 * 0.26327 * 20 19 18 22 22 C 1.50693 * 120.00207 * 179.72405 * 21 20 19 23 23 F 1.39904 * 109.47272 * 89.99432 * 22 21 20 24 24 F 1.39901 * 109.47232 * 209.99686 * 22 21 20 25 25 F 1.39894 * 109.47054 * 329.99662 * 22 21 20 26 26 C 1.38239 * 119.99756 * 359.45918 * 21 20 19 27 27 C 1.38234 * 119.99992 * 0.53603 * 26 21 20 28 28 C 1.53778 * 87.08025 * 25.43498 * 16 15 13 29 29 C 1.40209 * 120.33142 * 0.25177 * 9 8 7 30 30 C 1.36228 * 120.37570 * 359.48392 * 29 9 8 31 31 C 1.39870 * 119.96381 * 0.51345 * 30 29 9 32 32 H 0.96703 * 114.00255 * 60.00116 * 1 2 3 33 33 H 1.08996 * 109.47047 * 240.00250 * 2 1 3 34 34 H 1.48496 * 110.00573 * 59.99985 * 3 2 1 35 35 H 1.48501 * 110.00067 * 181.32094 * 3 2 1 36 36 H 1.08000 * 125.01315 * 0.02688 * 5 4 2 37 37 H 0.96996 * 125.06511 * 179.97438 * 6 5 4 38 38 H 1.08007 * 120.16720 * 359.94971 * 8 7 6 39 39 H 0.97003 * 120.00003 * 359.97438 * 12 10 9 40 40 H 1.09006 * 113.61355 * 334.56731 * 15 13 12 41 41 H 1.08998 * 113.61666 * 203.66840 * 15 13 12 42 42 H 1.07999 * 119.99751 * 359.97438 * 19 18 16 43 43 H 1.08002 * 119.99744 * 179.97438 * 20 19 18 44 44 H 1.08000 * 119.99965 * 180.30838 * 26 21 20 45 45 H 1.08002 * 120.00264 * 179.76377 * 27 26 21 46 46 H 1.08995 * 113.61786 * 89.11952 * 28 16 15 47 47 H 1.09008 * 113.61112 * 220.02213 * 28 16 15 48 48 H 1.08003 * 119.80597 * 179.74275 * 29 9 8 49 49 H 1.08003 * 120.01504 * 180.22843 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.4620 -0.1362 2.3243 6 7 2.8042 -1.0946 3.2350 7 6 2.4957 -2.3431 2.7393 8 6 2.6321 -3.6278 3.2423 9 6 2.2141 -4.7155 2.4786 10 6 2.3581 -6.0845 3.0103 11 8 2.8410 -6.2611 4.1122 12 7 1.9554 -7.1392 2.2741 13 6 2.0988 -8.4984 2.8017 14 1 2.1413 -8.5286 3.8905 15 6 1.1041 -9.5025 2.1959 16 6 2.1521 -9.7599 1.1004 17 1 2.0590 -9.0946 0.2421 18 6 2.2702 -11.2098 0.7067 19 6 2.0231 -11.5942 -0.5979 20 6 2.1320 -12.9240 -0.9591 21 6 2.4827 -13.8703 -0.0145 22 6 2.5953 -15.3209 -0.4068 23 9 3.9035 -15.5915 -0.8224 24 9 2.2789 -16.1271 0.6919 25 9 1.7081 -15.5910 -1.4542 26 6 2.7355 -13.4852 1.2889 27 6 2.6267 -12.1553 1.6501 28 6 3.2126 -9.3098 2.1191 29 6 1.6627 -4.5162 1.2050 30 6 1.5202 -3.2569 0.7054 31 6 1.9351 -2.1548 1.4601 32 1 -0.3934 0.4417 -0.7651 33 1 1.7923 -0.5138 -0.8900 34 1 1.5615 2.4680 1.2084 35 1 3.5345 1.7704 -0.0322 36 1 2.5977 0.9263 2.4625 37 1 3.2053 -0.9224 4.1012 38 1 3.0606 -3.7847 4.2213 39 1 1.5705 -6.9983 1.3949 40 1 0.1890 -9.0408 1.8250 41 1 0.9152 -10.3676 2.8315 42 1 1.7449 -10.8554 -1.3350 43 1 1.9384 -13.2243 -1.9783 44 1 3.0143 -14.2238 2.0258 45 1 2.8204 -11.8549 2.6692 46 1 3.6003 -10.1223 2.7336 47 1 3.9997 -8.6925 1.6860 48 1 1.3453 -5.3658 0.6185 49 1 1.0913 -3.1099 -0.2749 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705038_12335838.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:30:27 Heat of formation + Delta-G solvation = -95.293887 kcal Electronic energy + Delta-G solvation = -37522.360687 eV Core-core repulsion = 31967.353704 eV Total energy + Delta-G solvation = -5555.006983 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 417.134 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -51.22672 -48.75039 -48.70360 -42.56691 -41.66388 -40.57054 -39.04867 -37.81171 -37.46770 -34.83137 -33.42839 -32.77335 -32.08020 -30.85217 -30.60940 -27.89699 -26.70104 -26.48235 -25.52274 -24.52909 -23.90973 -23.71186 -22.42100 -21.68712 -20.67575 -20.22812 -19.58666 -19.52644 -19.41046 -19.34126 -18.39085 -18.21892 -17.49146 -17.32697 -16.77778 -16.46727 -16.15705 -15.90963 -15.84672 -15.66690 -15.54657 -15.46941 -15.41545 -15.16200 -15.08283 -14.98749 -14.93116 -14.86654 -14.83140 -14.69538 -14.59879 -14.44603 -14.34216 -14.04724 -13.83173 -13.47311 -13.28812 -13.23370 -12.79061 -12.71046 -12.57026 -12.36543 -12.15339 -11.93076 -11.89919 -11.77602 -11.24210 -11.15895 -10.87090 -10.17961 -10.14674 -10.04571 -9.92371 -9.45933 -8.90633 -4.91298 -0.40983 -0.12229 0.28495 0.31614 1.22950 1.38024 1.62683 1.71338 1.79803 1.84885 2.01766 2.15287 2.42089 2.69567 2.80850 2.97470 3.36018 3.43340 3.48984 3.57415 3.63415 3.66136 3.70033 3.74615 3.83763 3.89458 3.96369 4.03989 4.06741 4.20322 4.21469 4.30949 4.32246 4.39989 4.42449 4.50753 4.63825 4.68788 4.74310 4.78375 4.85927 4.87088 4.91558 5.01703 5.03879 5.12457 5.16554 5.19850 5.21024 5.34516 5.39672 5.47973 5.52175 5.62654 5.78787 5.89357 6.36013 6.44906 7.03558 7.11942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.567 6.567 2 C -0.043 4.043 3 Si 0.778 3.222 4 C -0.188 4.188 5 C 0.065 3.935 6 N -0.580 5.580 7 C 0.066 3.934 8 C -0.070 4.070 9 C -0.131 4.131 10 C 0.565 3.435 11 O -0.581 6.581 12 N -0.692 5.692 13 C 0.112 3.888 14 H 0.086 0.914 15 C -0.124 4.124 16 C -0.069 4.069 17 H 0.121 0.879 18 C -0.038 4.038 19 C -0.116 4.116 20 C -0.077 4.077 21 C -0.203 4.203 22 C 0.506 3.494 23 F -0.185 7.185 24 F -0.183 7.183 25 F -0.182 7.182 26 C -0.078 4.078 27 C -0.121 4.121 28 C -0.143 4.143 29 C -0.104 4.104 30 C -0.076 4.076 31 C -0.083 4.083 32 H 0.400 0.600 33 H 0.086 0.914 34 H -0.290 1.290 35 H -0.292 1.292 36 H 0.184 0.816 37 H 0.433 0.567 38 H 0.128 0.872 39 H 0.416 0.584 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.158 0.842 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.150 0.850 46 H 0.100 0.900 47 H 0.069 0.931 48 H 0.162 0.838 49 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.417 6.348 -5.902 8.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.377 6.377 2 C -0.153 4.153 3 Si 0.683 3.317 4 C -0.195 4.195 5 C -0.064 4.064 6 N -0.183 5.183 7 C -0.040 4.040 8 C -0.091 4.091 9 C -0.135 4.135 10 C 0.354 3.646 11 O -0.462 6.462 12 N -0.344 5.344 13 C 0.006 3.994 14 H 0.105 0.895 15 C -0.161 4.161 16 C -0.087 4.087 17 H 0.139 0.861 18 C -0.038 4.038 19 C -0.134 4.134 20 C -0.095 4.095 21 C -0.204 4.204 22 C 0.452 3.548 23 F -0.166 7.166 24 F -0.164 7.164 25 F -0.163 7.163 26 C -0.096 4.096 27 C -0.139 4.139 28 C -0.181 4.181 29 C -0.124 4.124 30 C -0.094 4.094 31 C -0.088 4.088 32 H 0.251 0.749 33 H 0.104 0.896 34 H -0.218 1.218 35 H -0.219 1.219 36 H 0.201 0.799 37 H 0.272 0.728 38 H 0.146 0.854 39 H 0.255 0.745 40 H 0.110 0.890 41 H 0.122 0.878 42 H 0.176 0.824 43 H 0.161 0.839 44 H 0.158 0.842 45 H 0.168 0.832 46 H 0.118 0.882 47 H 0.088 0.912 48 H 0.179 0.821 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.463 6.471 -4.056 7.776 hybrid contribution 0.434 -0.864 0.572 1.123 sum -1.030 5.607 -3.484 6.681 Atomic orbital electron populations 1.86483 1.17738 1.82358 1.51115 1.24150 0.85308 1.10229 0.95617 0.94051 0.77260 0.74818 0.85584 1.20101 1.09947 0.91629 0.97825 1.21996 1.00270 0.94843 0.89324 1.41732 1.54531 1.03533 1.18543 1.18211 1.03882 0.86635 0.95311 1.20126 1.00203 0.88584 1.00234 1.19507 1.05639 0.91676 0.96717 1.18298 0.76866 0.85288 0.84121 1.90773 1.46454 1.86759 1.22204 1.45423 1.63030 1.04757 1.21151 1.21906 0.97825 0.80631 0.98988 0.89541 1.23391 0.97247 0.98666 0.96830 1.21718 0.97091 0.91671 0.98234 0.86067 1.20134 0.94642 0.95757 0.93253 1.21355 0.99931 0.95429 0.96691 1.21164 0.95831 0.93144 0.99388 1.20025 1.11974 0.90645 0.97737 1.18535 0.73462 0.88443 0.74373 1.93218 1.37811 1.95079 1.90531 1.93182 1.92692 1.76365 1.54169 1.93181 1.68944 1.95050 1.59127 1.21112 0.96437 0.97848 0.94201 1.21245 1.00075 0.91478 1.01102 1.23580 0.96791 0.99925 0.97848 1.20975 0.99297 0.98229 0.93856 1.20472 0.98363 0.90199 1.00376 1.19561 1.01370 0.93837 0.94039 0.74908 0.89594 1.21764 1.21904 0.79880 0.72756 0.85406 0.74460 0.88975 0.87782 0.82442 0.83942 0.84218 0.83217 0.88150 0.91207 0.82093 0.83185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 0.72 12.86 -148.98 -1.92 -1.20 16 2 C -0.04 0.08 3.05 71.24 0.22 0.30 16 3 Si 0.78 -3.57 30.79 68.60 2.11 -1.45 16 4 C -0.19 -0.75 5.61 -18.64 -0.10 -0.86 16 5 C 0.06 0.16 10.43 83.09 0.87 1.02 16 6 N -0.58 -1.20 6.07 -187.72 -1.14 -2.34 16 7 C 0.07 0.39 7.26 38.96 0.28 0.67 16 8 C -0.07 -0.45 9.61 22.63 0.22 -0.24 16 9 C -0.13 -0.54 5.87 -20.08 -0.12 -0.66 16 10 C 0.57 3.13 7.76 86.71 0.67 3.80 16 11 O -0.58 -8.17 15.91 -3.99 -0.06 -8.23 16 12 N -0.69 1.72 5.21 -443.16 -2.31 -0.59 16 13 C 0.11 -0.33 4.32 45.52 0.20 -0.14 16 14 H 0.09 0.17 7.47 -2.39 -0.02 0.15 16 15 C -0.12 0.96 7.29 31.12 0.23 1.19 16 16 C -0.07 0.56 3.86 -11.01 -0.04 0.52 16 17 H 0.12 -1.39 8.09 -2.39 -0.02 -1.41 16 18 C -0.04 0.19 5.29 -19.86 -0.11 0.09 16 19 C -0.12 0.56 9.71 22.27 0.22 0.77 16 20 C -0.08 0.11 9.40 22.27 0.21 0.31 16 21 C -0.20 -0.30 5.45 -19.87 -0.11 -0.41 16 22 C 0.51 2.18 3.36 71.23 0.24 2.42 16 23 F -0.18 -1.18 17.30 44.97 0.78 -0.40 16 24 F -0.18 -1.02 16.47 44.97 0.74 -0.28 16 25 F -0.18 -0.95 16.46 44.97 0.74 -0.21 16 26 C -0.08 0.05 9.40 22.27 0.21 0.26 16 27 C -0.12 0.44 8.61 22.27 0.19 0.63 16 28 C -0.14 0.69 7.25 31.12 0.23 0.91 16 29 C -0.10 0.13 9.46 22.28 0.21 0.34 16 30 C -0.08 -0.08 10.03 22.20 0.22 0.15 16 31 C -0.08 -0.45 6.35 -20.14 -0.13 -0.58 16 32 H 0.40 -4.78 8.74 -74.06 -0.65 -5.43 16 33 H 0.09 -0.45 7.96 -2.39 -0.02 -0.47 16 34 H -0.29 -0.41 7.04 99.48 0.70 0.29 16 35 H -0.29 -0.38 7.11 99.48 0.71 0.33 16 36 H 0.18 -0.31 6.30 -2.91 -0.02 -0.32 16 37 H 0.43 -1.54 8.96 -92.71 -0.83 -2.37 16 38 H 0.13 0.92 7.62 -2.91 -0.02 0.89 16 39 H 0.42 -3.72 6.69 -92.71 -0.62 -4.34 16 40 H 0.09 -0.87 8.14 -2.38 -0.02 -0.89 16 41 H 0.10 -0.82 7.72 -2.39 -0.02 -0.84 16 42 H 0.16 -1.55 8.05 -2.91 -0.02 -1.57 16 43 H 0.14 -0.49 7.60 -2.91 -0.02 -0.51 16 44 H 0.14 -0.31 7.61 -2.91 -0.02 -0.33 16 45 H 0.15 -1.05 6.66 -2.91 -0.02 -1.07 16 46 H 0.10 -0.54 6.31 -2.39 -0.02 -0.55 16 47 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 48 H 0.16 -1.50 6.36 -2.91 -0.02 -1.52 16 49 H 0.15 -0.52 8.06 -2.91 -0.02 -0.54 16 Total: 0.00 -26.66 421.09 1.75 -24.91 By element: Atomic # 1 Polarization: -19.73 SS G_CDS: -0.99 Total: -20.72 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 3.80 Total: 10.51 kcal Atomic # 7 Polarization: 0.52 SS G_CDS: -3.45 Total: -2.93 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -1.98 Total: -9.43 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 2.26 Total: -0.89 kcal Atomic # 14 Polarization: -3.57 SS G_CDS: 2.11 Total: -1.45 kcal Total: -26.66 1.75 -24.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705038_12335838.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.387 kcal (2) G-P(sol) polarization free energy of solvation -26.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds