Wall clock time and date at job start Tue Mar 9 2021 13:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50699 * 109.47249 * 239.99737 * 2 1 3 5 5 C 1.37939 * 119.92548 * 299.72576 * 4 2 1 6 6 C 1.39599 * 119.87811 * 179.74838 * 5 4 2 7 7 C 1.47839 * 120.14355 * 180.29730 * 6 5 4 8 8 O 1.21556 * 120.00011 * 0.22601 * 7 6 5 9 9 N 1.34777 * 120.00034 * 180.23197 * 7 6 5 10 10 C 1.46504 * 119.99960 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.85301 * 23.79955 * 10 9 7 12 12 C 1.53777 * 113.61675 * 155.00166 * 10 9 7 13 13 C 1.53778 * 87.08661 * 89.11286 * 12 10 9 14 14 H 1.08998 * 113.61360 * 270.88719 * 13 12 10 15 15 C 1.50694 * 113.61565 * 140.06332 * 13 12 10 16 16 C 1.38233 * 120.00207 * 299.73112 * 15 13 12 17 17 C 1.38235 * 119.99877 * 179.81207 * 16 15 13 18 18 C 1.38236 * 119.99923 * 0.41582 * 17 16 15 19 19 C 1.50702 * 119.99877 * 179.79614 * 18 17 16 20 20 F 1.39905 * 109.47077 * 270.01887 * 19 18 17 21 21 F 1.39902 * 109.47221 * 30.01781 * 19 18 17 22 22 F 1.39894 * 109.47335 * 150.02371 * 19 18 17 23 23 C 1.38232 * 120.00197 * 359.81355 * 18 17 16 24 24 C 1.38232 * 120.00121 * 0.02562 * 23 18 17 25 25 C 1.53785 * 87.07977 * 25.43255 * 13 12 10 26 26 C 1.39547 * 119.71705 * 0.52632 * 6 5 4 27 27 C 1.38076 * 119.84136 * 359.75008 * 26 6 5 28 28 Br 1.89105 * 119.93716 * 180.02562 * 27 26 6 29 29 C 1.38370 * 119.91978 * 120.00477 * 4 2 1 30 30 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 31 31 H 1.09004 * 109.47449 * 120.00278 * 2 1 3 32 32 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 33 33 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 34 34 H 1.08002 * 120.05809 * 0.02562 * 5 4 2 35 35 H 0.96998 * 120.00301 * 359.97438 * 9 7 6 36 36 H 1.08997 * 113.61581 * 203.66694 * 12 10 9 37 37 H 1.09005 * 113.61101 * 334.47683 * 12 10 9 38 38 H 1.07995 * 120.00234 * 359.97438 * 16 15 13 39 39 H 1.08003 * 120.00168 * 180.21211 * 17 16 15 40 40 H 1.07999 * 120.00200 * 179.97438 * 23 18 17 41 41 H 1.07998 * 120.00092 * 179.97438 * 24 23 18 42 42 H 1.09000 * 113.61848 * 220.01988 * 25 13 12 43 43 H 1.09000 * 113.61092 * 89.11292 * 25 13 12 44 44 H 1.08001 * 120.07699 * 179.73140 * 26 6 5 45 45 H 1.07991 * 119.86014 * 359.95382 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6018 -2.0327 -1.4443 6 6 2.0633 -2.6884 -2.5870 7 6 1.7083 -4.1036 -2.8253 8 8 1.0097 -4.6976 -2.0274 9 7 2.1594 -4.7351 -3.9272 10 6 1.8071 -6.1374 -4.1637 11 1 0.8917 -6.4359 -3.6527 12 6 1.8437 -6.5401 -5.6474 13 6 3.3252 -6.8927 -5.4341 14 1 4.0023 -6.0559 -5.6055 15 6 3.7553 -8.1490 -6.1467 16 6 3.1483 -9.3547 -5.8491 17 6 3.5402 -10.5064 -6.5056 18 6 4.5451 -10.4538 -7.4534 19 6 4.9755 -11.7101 -8.1657 20 9 6.0064 -12.3242 -7.4463 21 9 3.8892 -12.5862 -8.2637 22 9 5.4307 -11.3864 -9.4483 23 6 5.1554 -9.2489 -7.7475 24 6 4.7613 -8.0966 -7.0935 25 6 2.9786 -7.1110 -3.9518 26 6 2.8652 -2.0037 -3.5010 27 6 3.1927 -0.6819 -3.2726 28 35 4.2785 0.2488 -4.5098 29 6 2.7268 -0.0365 -2.1401 30 1 -0.3934 0.4417 -0.7651 31 1 1.7923 -0.5139 0.8900 32 1 1.5879 2.4585 -1.2243 33 1 1.5615 2.4679 1.2085 34 1 0.9842 -2.5585 -0.7311 35 1 2.7166 -4.2611 -4.5641 36 1 1.2189 -7.4020 -5.8814 37 1 1.6861 -5.7052 -6.3303 38 1 2.3660 -9.3965 -5.1058 39 1 3.0636 -11.4479 -6.2756 40 1 5.9408 -9.2078 -8.4877 41 1 5.2384 -7.1553 -7.3230 42 1 3.7386 -6.7369 -3.2659 43 1 2.6641 -8.1291 -3.7223 44 1 3.2291 -2.5065 -4.3849 45 1 2.9849 0.9976 -1.9661 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705038_12335870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:31:01 Heat of formation + Delta-G solvation = -123.680503 kcal Electronic energy + Delta-G solvation = -34766.302995 eV Core-core repulsion = 29347.662884 eV Total energy + Delta-G solvation = -5418.640111 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 456.033 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -51.22831 -48.75305 -48.70488 -41.89839 -41.08965 -40.06081 -38.88455 -37.81582 -35.00097 -33.61085 -33.30021 -32.34844 -32.02700 -30.44300 -27.99199 -27.03660 -26.70932 -25.86014 -24.67753 -23.94054 -22.82234 -22.43040 -21.68660 -20.27882 -19.58758 -19.52626 -19.41298 -19.18404 -17.96678 -17.81766 -17.27721 -17.04455 -16.54793 -16.42392 -16.27564 -16.08832 -15.86289 -15.75090 -15.54471 -15.50316 -15.22718 -15.15879 -14.96191 -14.94290 -14.86813 -14.69558 -14.48295 -14.38752 -14.23960 -14.13907 -14.04626 -13.46380 -13.29480 -13.24664 -13.02648 -12.79036 -12.37896 -12.29833 -11.96281 -11.92161 -11.83575 -11.78802 -11.45982 -11.25405 -11.20916 -10.72925 -10.37666 -10.11913 -10.04552 -9.92918 -9.89062 -4.97526 -0.51372 -0.15324 -0.12517 0.28248 0.44629 1.20646 1.51931 1.55063 1.62530 1.88728 1.96328 2.41489 2.46559 2.69414 2.97251 3.25309 3.32281 3.35758 3.41451 3.46626 3.62754 3.68752 3.81253 3.83224 3.88250 3.89326 3.95602 3.97057 4.19387 4.21593 4.30646 4.31815 4.39765 4.55040 4.62798 4.68442 4.76459 4.78157 4.83161 4.86021 4.93549 5.00659 5.03532 5.08108 5.13147 5.19768 5.20210 5.37061 5.44965 5.60857 5.78588 6.35944 6.42229 7.03839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.083 4.083 3 Si 0.761 3.239 4 C -0.114 4.114 5 C -0.029 4.029 6 C -0.136 4.136 7 C 0.563 3.437 8 O -0.571 6.571 9 N -0.693 5.693 10 C 0.112 3.888 11 H 0.089 0.911 12 C -0.124 4.124 13 C -0.070 4.070 14 H 0.121 0.879 15 C -0.038 4.038 16 C -0.121 4.121 17 C -0.078 4.078 18 C -0.202 4.202 19 C 0.505 3.495 20 F -0.185 7.185 21 F -0.183 7.183 22 F -0.182 7.182 23 C -0.078 4.078 24 C -0.117 4.117 25 C -0.142 4.142 26 C -0.042 4.042 27 C -0.099 4.099 28 Br -0.028 7.028 29 C -0.061 4.061 30 H 0.388 0.612 31 H 0.131 0.869 32 H -0.274 1.274 33 H -0.298 1.298 34 H 0.131 0.869 35 H 0.415 0.585 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.151 0.849 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.158 0.842 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.164 0.836 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.238 4.876 -2.105 6.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.192 4.192 3 Si 0.665 3.335 4 C -0.115 4.115 5 C -0.049 4.049 6 C -0.140 4.140 7 C 0.351 3.649 8 O -0.451 6.451 9 N -0.344 5.344 10 C 0.007 3.993 11 H 0.107 0.893 12 C -0.162 4.162 13 C -0.088 4.088 14 H 0.139 0.861 15 C -0.038 4.038 16 C -0.139 4.139 17 C -0.096 4.096 18 C -0.204 4.204 19 C 0.451 3.549 20 F -0.166 7.166 21 F -0.164 7.164 22 F -0.163 7.163 23 C -0.096 4.096 24 C -0.134 4.134 25 C -0.181 4.181 26 C -0.063 4.063 27 C -0.179 4.179 28 Br 0.057 6.943 29 C -0.080 4.080 30 H 0.237 0.763 31 H 0.149 0.851 32 H -0.200 1.200 33 H -0.226 1.226 34 H 0.149 0.851 35 H 0.254 0.746 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.168 0.832 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.175 0.825 42 H 0.090 0.910 43 H 0.119 0.881 44 H 0.182 0.818 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.051 5.263 -1.520 6.271 hybrid contribution -1.069 -0.829 -0.563 1.465 sum 1.982 4.434 -2.083 5.285 Atomic orbital electron populations 1.86614 1.18176 1.80335 1.50249 1.25286 0.83706 1.11983 0.98196 0.94209 0.90247 0.71781 0.77307 1.20251 0.99385 0.94233 0.97665 1.21255 0.94795 0.93524 0.95294 1.19855 1.02830 0.93720 0.97580 1.18313 0.79032 0.86215 0.81344 1.90811 1.39417 1.68166 1.46713 1.45464 1.52797 1.12409 1.23774 1.21920 0.98830 0.80368 0.98166 0.89317 1.23394 0.95267 1.03041 0.94501 1.21725 0.97451 0.95143 0.94477 0.86102 1.20130 0.94008 0.95070 0.94586 1.21246 1.01035 0.91235 1.00337 1.21118 0.94413 1.00539 0.93531 1.20027 1.04022 0.92570 1.03760 1.18548 0.74650 0.84674 0.76979 1.93219 1.60467 1.84970 1.77971 1.93183 1.55038 1.72067 1.96124 1.93180 1.89443 1.92609 1.41100 1.21161 0.98487 0.91198 0.98720 1.21354 0.97282 0.98806 0.95974 1.23579 0.98079 1.00529 0.95896 1.21468 0.93928 0.92333 0.98543 1.21738 1.03039 0.95848 0.97235 1.96869 1.65585 1.75373 1.56426 1.21382 0.94482 1.00552 0.91630 0.76274 0.85113 1.19984 1.22572 0.85137 0.74614 0.87785 0.88996 0.83151 0.84219 0.84007 0.82477 0.91010 0.88123 0.81846 0.82717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.66 12.77 -148.98 -1.90 -2.56 16 2 C -0.08 0.22 2.82 71.24 0.20 0.42 16 3 Si 0.76 -3.21 29.78 68.60 2.04 -1.17 16 4 C -0.11 0.28 5.38 -19.90 -0.11 0.17 16 5 C -0.03 -0.03 9.16 22.53 0.21 0.18 16 6 C -0.14 0.12 5.87 -20.09 -0.12 0.01 16 7 C 0.56 1.11 7.77 86.78 0.67 1.79 16 8 O -0.57 -6.30 15.95 -3.89 -0.06 -6.36 16 9 N -0.69 3.63 5.21 -442.89 -2.31 1.32 16 10 C 0.11 -0.57 4.32 45.52 0.20 -0.38 16 11 H 0.09 -0.02 7.46 -2.39 -0.02 -0.04 16 12 C -0.12 1.16 7.29 31.12 0.23 1.39 16 13 C -0.07 0.67 3.85 -11.01 -0.04 0.62 16 14 H 0.12 -1.56 8.09 -2.39 -0.02 -1.58 16 15 C -0.04 0.23 5.29 -19.87 -0.11 0.12 16 16 C -0.12 0.55 8.63 22.27 0.19 0.75 16 17 C -0.08 0.10 9.40 22.27 0.21 0.31 16 18 C -0.20 -0.19 5.45 -19.87 -0.11 -0.29 16 19 C 0.51 1.97 3.36 71.24 0.24 2.21 16 20 F -0.18 -1.10 17.30 44.97 0.78 -0.33 16 21 F -0.18 -0.94 16.46 44.97 0.74 -0.20 16 22 F -0.18 -0.88 16.46 44.97 0.74 -0.14 16 23 C -0.08 0.15 9.40 22.27 0.21 0.36 16 24 C -0.12 0.64 9.71 22.27 0.22 0.86 16 25 C -0.14 0.94 7.26 31.12 0.23 1.16 16 26 C -0.04 0.24 9.28 22.55 0.21 0.45 16 27 C -0.10 0.44 6.22 22.28 0.14 0.58 16 28 Br -0.03 0.13 33.69 -20.37 -0.69 -0.56 16 29 C -0.06 0.27 8.41 22.35 0.19 0.46 16 30 H 0.39 -1.82 8.70 -74.06 -0.64 -2.47 16 31 H 0.13 -0.52 7.96 -2.38 -0.02 -0.54 16 32 H -0.27 0.31 7.11 99.48 0.71 1.02 16 33 H -0.30 -1.15 7.11 99.48 0.71 -0.44 16 34 H 0.13 0.58 7.65 -2.91 -0.02 0.55 16 35 H 0.42 -4.77 6.74 -92.71 -0.62 -5.39 16 36 H 0.10 -0.96 7.73 -2.39 -0.02 -0.98 16 37 H 0.09 -1.01 8.14 -2.38 -0.02 -1.03 16 38 H 0.15 -1.22 6.65 -2.91 -0.02 -1.24 16 39 H 0.14 -0.40 7.60 -2.91 -0.02 -0.42 16 40 H 0.14 -0.55 7.60 -2.91 -0.02 -0.57 16 41 H 0.16 -1.66 8.05 -2.91 -0.02 -1.68 16 42 H 0.07 -0.34 8.14 -2.39 -0.02 -0.35 16 43 H 0.10 -0.70 6.31 -2.39 -0.02 -0.71 16 44 H 0.16 -1.90 6.40 -2.91 -0.02 -1.92 16 45 H 0.16 -1.15 4.86 -2.92 -0.01 -1.16 16 Total: 0.00 -19.85 408.82 2.07 -17.78 By element: Atomic # 1 Polarization: -18.83 SS G_CDS: -0.13 Total: -18.95 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 2.85 Total: 11.16 kcal Atomic # 7 Polarization: 3.63 SS G_CDS: -2.31 Total: 1.32 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -1.96 Total: -8.92 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 2.26 Total: -0.67 kcal Atomic # 14 Polarization: -3.21 SS G_CDS: 2.04 Total: -1.17 kcal Atomic # 35 Polarization: 0.13 SS G_CDS: -0.69 Total: -0.56 kcal Total: -19.85 2.07 -17.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705038_12335870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.897 kcal (2) G-P(sol) polarization free energy of solvation -19.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds