Wall clock time and date at job start Tue Mar 9 2021 13:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86294 * 109.47329 * 2 1 4 4 C 1.50703 * 109.46721 * 119.99918 * 2 1 3 5 5 C 1.38400 * 119.82782 * 64.99880 * 4 2 1 6 6 C 1.37890 * 120.17346 * 180.02562 * 5 4 2 7 7 C 1.39834 * 119.82326 * 359.97438 * 6 5 4 8 8 C 1.47205 * 120.17032 * 179.97438 * 7 6 5 9 9 C 1.34813 * 119.99983 * 179.72060 * 8 7 6 10 10 C 1.46432 * 119.99999 * 180.27347 * 9 8 7 11 11 O 1.21693 * 119.99909 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00077 * 179.97438 * 10 9 8 13 13 C 1.46495 * 119.99667 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.85392 * 23.81205 * 13 12 10 15 15 C 1.53788 * 113.61183 * 155.00275 * 13 12 10 16 16 C 1.53785 * 87.08148 * 89.11525 * 15 13 12 17 17 H 1.08997 * 113.61331 * 270.80466 * 16 15 13 18 18 C 1.50700 * 113.61395 * 139.97833 * 16 15 13 19 19 C 1.38231 * 120.00239 * 299.73308 * 18 16 15 20 20 C 1.38234 * 119.99945 * 179.78612 * 19 18 16 21 21 C 1.38231 * 119.99922 * 0.46269 * 20 19 18 22 22 C 1.50699 * 120.00061 * 179.79107 * 21 20 19 23 23 F 1.39902 * 109.47162 * 269.97369 * 22 21 20 24 24 F 1.39905 * 109.47333 * 29.97538 * 22 21 20 25 25 F 1.39901 * 109.47541 * 149.97599 * 22 21 20 26 26 C 1.38237 * 120.00305 * 359.76504 * 21 20 19 27 27 C 1.38237 * 119.99579 * 120.00134 * 18 16 15 28 28 C 1.53774 * 113.61672 * 252.49837 * 13 12 10 29 29 C 1.39846 * 119.66001 * 0.24663 * 7 6 5 30 30 C 1.37886 * 119.82431 * 359.49858 * 29 7 6 31 31 H 0.96698 * 113.99982 * 300.00135 * 1 2 3 32 32 H 1.08998 * 109.46953 * 239.99938 * 2 1 3 33 33 H 1.48506 * 110.00125 * 300.00155 * 3 2 1 34 34 H 1.48498 * 110.00282 * 61.31526 * 3 2 1 35 35 H 1.08005 * 119.91507 * 0.02562 * 5 4 2 36 36 H 1.07997 * 120.08898 * 180.02562 * 6 5 4 37 37 H 1.08002 * 120.00168 * 0.02562 * 8 7 6 38 38 H 1.08001 * 120.00325 * 0.27519 * 9 8 7 39 39 H 0.97000 * 119.99732 * 0.02562 * 12 10 9 40 40 H 1.08993 * 113.61637 * 203.66594 * 15 13 12 41 41 H 1.09003 * 113.61239 * 334.56896 * 15 13 12 42 42 H 1.07999 * 119.99964 * 359.97438 * 19 18 16 43 43 H 1.08001 * 120.00041 * 180.24859 * 20 19 18 44 44 H 1.07995 * 120.00332 * 180.02562 * 26 21 20 45 45 H 1.08001 * 120.00165 * 359.97438 * 27 18 16 46 46 H 1.09000 * 113.61309 * 25.43688 * 28 13 12 47 47 H 1.09000 * 113.62121 * 156.34261 * 28 13 12 48 48 H 1.08004 * 120.08113 * 179.72433 * 29 7 6 49 49 H 1.08000 * 119.91254 * 180.22786 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6823 -2.0619 1.3950 6 6 2.1380 -2.7189 2.5184 7 6 2.8540 -2.0161 3.4925 8 6 3.3436 -2.7098 4.6951 9 6 4.0383 -2.0302 5.6294 10 6 4.5306 -2.7215 6.8227 11 8 4.3129 -3.9096 6.9708 12 7 5.2255 -2.0422 7.7565 13 6 5.7174 -2.7338 8.9506 14 1 5.8361 -3.8068 8.7996 15 6 6.9445 -2.0623 9.5897 16 6 5.9563 -1.2236 10.4174 17 1 5.6567 -0.2956 9.9305 18 6 6.3860 -1.0220 11.8477 19 6 6.5680 -2.1141 12.6753 20 6 6.9664 -1.9294 13.9860 21 6 7.1736 -0.6519 14.4718 22 6 7.6034 -0.4502 15.9020 23 9 6.4722 -0.3232 16.7154 24 9 8.3584 -1.5507 16.3218 25 9 8.3786 0.7105 15.9969 26 6 6.9871 0.4405 13.6456 27 6 6.5928 0.2555 12.3336 28 6 4.9495 -2.3714 10.2326 29 6 3.0975 -0.6497 3.3212 30 6 2.6397 -0.0081 2.1899 31 1 -0.3933 0.4417 0.7650 32 1 1.7923 -0.5138 -0.8900 33 1 1.5616 2.4679 -1.2085 34 1 1.5880 2.4586 1.2242 35 1 1.1295 -2.6033 0.6415 36 1 1.9433 -3.7735 2.6452 37 1 3.1505 -3.7643 4.8265 38 1 4.2319 -0.9758 5.4978 39 1 5.3993 -1.0952 7.6382 40 1 7.5506 -2.7410 10.1897 41 1 7.5354 -1.4739 8.8877 42 1 6.4018 -3.1120 12.2969 43 1 7.1125 -2.7829 14.6314 44 1 7.1494 1.4385 14.0250 45 1 6.4468 1.1090 11.6881 46 1 3.9298 -2.0325 10.0497 47 1 5.0102 -3.1345 11.0085 48 1 3.6459 -0.0994 4.0715 49 1 2.8302 1.0463 2.0544 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705038_12360594.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:31:14 Heat of formation + Delta-G solvation = -115.097959 kcal Electronic energy + Delta-G solvation = -34951.773748 eV Core-core repulsion = 29589.560047 eV Total energy + Delta-G solvation = -5362.213701 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.139 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -51.22802 -48.75147 -48.70572 -41.63851 -40.72978 -40.34070 -38.95161 -37.88883 -35.07702 -34.71561 -32.73577 -32.17792 -32.06732 -31.18443 -28.06028 -27.09605 -26.68983 -25.24173 -24.28523 -24.00862 -23.67971 -22.43211 -22.05385 -20.55467 -20.09260 -19.58321 -19.51725 -19.38009 -18.92142 -18.24029 -17.32291 -17.18722 -16.68473 -16.51885 -16.37545 -16.18486 -15.98826 -15.81461 -15.77225 -15.54543 -15.46347 -15.18329 -15.15877 -15.04292 -14.93974 -14.86817 -14.62256 -14.53322 -14.46155 -14.34230 -14.15213 -14.00684 -13.81642 -13.45134 -13.26431 -13.23194 -13.04889 -12.77542 -12.37188 -12.27300 -12.07622 -11.89911 -11.75979 -11.58423 -11.33752 -11.23081 -11.07137 -10.60814 -10.12303 -10.04475 -9.96764 -9.92092 -9.23755 -4.91408 -0.53984 -0.12537 0.28000 0.40964 0.89727 1.31251 1.59826 1.62435 1.97360 2.15261 2.23625 2.41943 2.69348 2.81992 2.97190 3.35775 3.40770 3.45693 3.55665 3.64598 3.69116 3.72803 3.81809 3.84270 3.89098 3.95893 3.97414 4.18669 4.20920 4.22650 4.31722 4.37187 4.39968 4.46342 4.58749 4.66129 4.68573 4.78842 4.85193 4.85930 4.88967 4.99169 5.02342 5.04218 5.10427 5.15205 5.18570 5.19698 5.21817 5.39647 5.48559 5.50338 5.61347 5.65528 5.78500 5.91430 6.47176 6.56048 7.23859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.089 4.089 3 Si 0.772 3.228 4 C -0.109 4.109 5 C -0.107 4.107 6 C -0.104 4.104 7 C -0.080 4.080 8 C -0.022 4.022 9 C -0.207 4.207 10 C 0.544 3.456 11 O -0.592 6.592 12 N -0.694 5.694 13 C 0.113 3.887 14 H 0.083 0.917 15 C -0.123 4.123 16 C -0.068 4.068 17 H 0.122 0.878 18 C -0.038 4.038 19 C -0.122 4.122 20 C -0.078 4.078 21 C -0.202 4.202 22 C 0.506 3.494 23 F -0.185 7.185 24 F -0.183 7.183 25 F -0.182 7.182 26 C -0.078 4.078 27 C -0.117 4.117 28 C -0.144 4.144 29 C -0.094 4.094 30 C -0.123 4.123 31 H 0.386 0.614 32 H 0.123 0.877 33 H -0.308 1.308 34 H -0.277 1.277 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.166 0.834 39 H 0.419 0.581 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.150 0.850 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.158 0.842 46 H 0.069 0.931 47 H 0.097 0.903 48 H 0.159 0.841 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.751 4.639 -3.306 6.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.197 4.197 3 Si 0.677 3.323 4 C -0.110 4.110 5 C -0.125 4.125 6 C -0.122 4.122 7 C -0.080 4.080 8 C -0.042 4.042 9 C -0.227 4.227 10 C 0.335 3.665 11 O -0.474 6.474 12 N -0.345 5.345 13 C 0.007 3.993 14 H 0.101 0.899 15 C -0.161 4.161 16 C -0.086 4.086 17 H 0.140 0.860 18 C -0.038 4.038 19 C -0.139 4.139 20 C -0.096 4.096 21 C -0.204 4.204 22 C 0.452 3.548 23 F -0.166 7.166 24 F -0.164 7.164 25 F -0.163 7.163 26 C -0.096 4.096 27 C -0.134 4.134 28 C -0.182 4.182 29 C -0.111 4.111 30 C -0.141 4.141 31 H 0.235 0.765 32 H 0.141 0.859 33 H -0.236 1.236 34 H -0.203 1.203 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.139 0.861 38 H 0.183 0.817 39 H 0.257 0.743 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.167 0.833 43 H 0.158 0.842 44 H 0.160 0.840 45 H 0.176 0.824 46 H 0.088 0.912 47 H 0.116 0.884 48 H 0.176 0.824 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.517 4.338 -3.677 6.219 hybrid contribution -1.134 -0.106 1.030 1.536 sum 1.383 4.232 -2.646 5.179 Atomic orbital electron populations 1.86587 1.18582 1.80424 1.50189 1.25326 0.83427 1.12195 0.98762 0.94032 0.90171 0.71718 0.76380 1.20524 0.98842 0.94776 0.96820 1.21084 0.99315 0.94224 0.97909 1.21611 0.96522 1.00675 0.93349 1.19125 1.00031 0.94310 0.94582 1.22362 0.91428 0.99535 0.90864 1.23014 1.03365 1.02201 0.94129 1.18754 0.77580 0.86283 0.83924 1.90823 1.59397 1.17628 1.79597 1.45429 1.55040 1.13804 1.20177 1.21846 0.95657 0.97500 0.84320 0.89867 1.23376 0.95495 0.98794 0.98459 1.21716 0.96811 0.99421 0.90693 0.86026 1.20151 0.94832 0.92970 0.95884 1.21243 0.99718 1.00438 0.92528 1.21114 0.96030 0.95490 0.96981 1.20023 1.11279 0.97402 0.91668 1.18540 0.74686 0.73553 0.88045 1.93218 1.51798 1.95657 1.75963 1.93183 1.77095 1.54298 1.91829 1.93182 1.76026 1.50212 1.96889 1.21168 0.95938 0.98264 0.94186 1.21355 0.99280 0.98020 0.94758 1.23574 0.98724 0.98387 0.97546 1.21657 0.98495 0.93108 0.97884 1.21216 0.98338 1.00647 0.93856 0.76460 0.85915 1.23620 1.20336 0.85379 0.84690 0.86132 0.81662 0.74297 0.88082 0.88938 0.83269 0.84228 0.83958 0.82437 0.91248 0.88434 0.82365 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.77 12.83 -148.98 -1.91 -2.68 16 2 C -0.09 0.21 2.80 71.24 0.20 0.41 16 3 Si 0.77 -3.28 29.87 68.60 2.05 -1.23 16 4 C -0.11 0.24 5.36 -19.79 -0.11 0.13 16 5 C -0.11 0.05 9.66 22.23 0.21 0.27 16 6 C -0.10 0.07 9.80 22.57 0.22 0.29 16 7 C -0.08 0.14 5.87 -20.15 -0.12 0.02 16 8 C -0.02 0.02 9.46 23.84 0.23 0.24 16 9 C -0.21 0.76 9.41 23.62 0.22 0.98 16 10 C 0.54 0.82 7.74 86.38 0.67 1.49 16 11 O -0.59 -6.82 15.83 -4.33 -0.07 -6.89 16 12 N -0.69 3.72 5.26 -444.26 -2.34 1.38 16 13 C 0.11 -0.49 4.32 45.52 0.20 -0.29 16 14 H 0.08 0.09 7.46 -2.39 -0.02 0.07 16 15 C -0.12 1.09 7.29 31.12 0.23 1.32 16 16 C -0.07 0.62 3.86 -11.01 -0.04 0.58 16 17 H 0.12 -1.52 8.09 -2.39 -0.02 -1.54 16 18 C -0.04 0.21 5.29 -19.87 -0.11 0.11 16 19 C -0.12 0.49 8.63 22.27 0.19 0.68 16 20 C -0.08 0.07 9.40 22.27 0.21 0.28 16 21 C -0.20 -0.22 5.45 -19.87 -0.11 -0.33 16 22 C 0.51 2.02 3.36 71.24 0.24 2.26 16 23 F -0.18 -1.12 17.30 44.97 0.78 -0.35 16 24 F -0.18 -0.96 16.46 44.97 0.74 -0.22 16 25 F -0.18 -0.89 16.46 44.97 0.74 -0.15 16 26 C -0.08 0.14 9.40 22.27 0.21 0.35 16 27 C -0.12 0.62 9.71 22.27 0.22 0.83 16 28 C -0.14 0.82 7.25 31.12 0.23 1.04 16 29 C -0.09 0.50 9.41 22.58 0.21 0.71 16 30 C -0.12 0.60 8.65 22.22 0.19 0.79 16 31 H 0.39 -1.66 8.70 -74.06 -0.64 -2.30 16 32 H 0.12 -0.42 7.96 -2.39 -0.02 -0.44 16 33 H -0.31 -1.34 7.11 99.48 0.71 -0.63 16 34 H -0.28 0.41 7.00 99.48 0.70 1.11 16 35 H 0.13 -0.11 8.06 -2.91 -0.02 -0.14 16 36 H 0.14 -0.34 8.06 -2.91 -0.02 -0.36 16 37 H 0.12 0.29 7.52 -2.91 -0.02 0.27 16 38 H 0.17 -1.90 6.07 -2.91 -0.02 -1.92 16 39 H 0.42 -5.18 8.68 -92.71 -0.80 -5.98 16 40 H 0.10 -0.86 7.73 -2.39 -0.02 -0.88 16 41 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 42 H 0.15 -1.10 6.64 -2.91 -0.02 -1.12 16 43 H 0.14 -0.35 7.60 -2.91 -0.02 -0.38 16 44 H 0.14 -0.54 7.60 -2.91 -0.02 -0.56 16 45 H 0.16 -1.64 8.05 -2.91 -0.02 -1.67 16 46 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 47 H 0.10 -0.57 6.30 -2.39 -0.02 -0.58 16 48 H 0.16 -1.81 6.17 -2.91 -0.02 -1.83 16 49 H 0.15 -1.31 4.81 -2.91 -0.01 -1.33 16 Total: 0.00 -22.46 422.04 3.00 -19.45 By element: Atomic # 1 Polarization: -21.11 SS G_CDS: -0.38 Total: -21.49 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 3.39 Total: 12.16 kcal Atomic # 7 Polarization: 3.72 SS G_CDS: -2.34 Total: 1.38 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -1.98 Total: -9.57 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 2.26 Total: -0.71 kcal Atomic # 14 Polarization: -3.28 SS G_CDS: 2.05 Total: -1.23 kcal Total: -22.46 3.00 -19.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705038_12360594.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.643 kcal (2) G-P(sol) polarization free energy of solvation -22.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds