Wall clock time and date at job start Tue Mar 9 2021 13:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86295 * 109.47151 * 2 1 4 4 C 1.50704 * 109.46912 * 120.00032 * 2 1 3 5 5 C 1.38562 * 120.31879 * 244.99912 * 4 2 1 6 6 N 1.31526 * 120.89965 * 180.02562 * 5 4 2 7 7 C 1.32717 * 121.64303 * 359.97438 * 6 5 4 8 8 C 1.48169 * 119.72480 * 180.02562 * 7 6 5 9 9 O 1.21508 * 120.00235 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99517 * 359.97438 * 8 7 6 11 11 C 1.46504 * 119.99568 * 179.97438 * 10 8 7 12 12 H 1.08993 * 112.85155 * 336.19939 * 11 10 8 13 13 C 1.53788 * 113.68903 * 107.47219 * 11 10 8 14 14 C 1.53778 * 87.08257 * 89.12461 * 13 11 10 15 15 H 1.08999 * 113.69040 * 270.87068 * 14 13 11 16 16 C 1.50697 * 113.61311 * 139.98278 * 14 13 11 17 17 C 1.38238 * 120.00054 * 142.50382 * 16 14 13 18 18 C 1.38235 * 120.00017 * 179.97438 * 17 16 14 19 19 C 1.38235 * 119.99856 * 359.97438 * 18 17 16 20 20 C 1.50706 * 119.99802 * 179.97438 * 19 18 17 21 21 F 1.39900 * 109.46715 * 90.00029 * 20 19 18 22 22 F 1.39897 * 109.47068 * 209.99940 * 20 19 18 23 23 F 1.39895 * 109.47042 * 330.00249 * 20 19 18 24 24 C 1.38231 * 120.00255 * 0.27761 * 19 18 17 25 25 C 1.38229 * 120.00068 * 322.52475 * 16 14 13 26 26 C 1.53777 * 87.08108 * 25.43345 * 14 13 11 27 27 C 1.39313 * 120.55483 * 0.27412 * 7 6 5 28 28 C 1.38588 * 119.05496 * 359.47976 * 27 7 6 29 29 H 0.96694 * 113.99935 * 300.00128 * 1 2 3 30 30 H 1.09004 * 109.47536 * 239.99787 * 2 1 3 31 31 H 1.48498 * 110.00191 * 178.68192 * 3 2 1 32 32 H 1.48503 * 110.00090 * 299.99570 * 3 2 1 33 33 H 1.07994 * 119.55496 * 0.02562 * 5 4 2 34 34 H 0.96997 * 120.00410 * 0.02562 * 10 8 7 35 35 H 1.09004 * 113.60871 * 334.57482 * 13 11 10 36 36 H 1.09000 * 113.61277 * 203.67857 * 13 11 10 37 37 H 1.07999 * 120.00295 * 359.97438 * 17 16 14 38 38 H 1.07997 * 119.99929 * 179.97438 * 18 17 16 39 39 H 1.07997 * 120.00101 * 179.72736 * 24 19 18 40 40 H 1.08006 * 120.00264 * 0.02562 * 25 16 14 41 41 H 1.08998 * 113.61449 * 89.11861 * 26 14 13 42 42 H 1.09004 * 113.61391 * 220.01988 * 26 14 13 43 43 H 1.07995 * 120.47143 * 179.71013 * 27 7 6 44 44 H 1.08005 * 120.75537 * 180.24302 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6410 -0.0171 2.1977 6 7 3.0851 -0.6259 3.2758 7 6 2.8736 -1.9198 3.4818 8 6 3.3927 -2.5623 4.7118 9 8 3.2016 -3.7465 4.9058 10 7 4.0769 -1.8332 5.6156 11 6 4.5898 -2.4685 6.8321 12 1 4.0386 -3.3686 7.1041 13 6 6.1161 -2.6562 6.8347 14 6 6.2084 -1.2558 7.4633 15 1 6.2710 -0.4505 6.7314 16 6 7.2530 -1.1469 8.5440 17 6 8.0024 0.0082 8.6670 18 6 8.9603 0.1084 9.6586 19 6 9.1684 -0.9464 10.5276 20 6 10.2131 -0.8375 11.6083 21 9 9.6338 -0.3045 12.7648 22 9 10.7291 -2.1074 11.8878 23 9 11.2462 0.0007 11.1755 24 6 8.4227 -2.1034 10.4013 25 6 7.4622 -2.2021 9.4120 26 6 4.7871 -1.4898 8.0018 27 6 2.1721 -2.6801 2.5487 28 6 1.6877 -2.0638 1.4058 29 1 -0.3933 0.4417 0.7650 30 1 1.7924 -0.5139 -0.8900 31 1 3.5345 1.7703 0.0321 32 1 1.5615 2.4678 -1.2086 33 1 2.8322 1.0374 2.0647 34 1 4.2292 -0.8879 5.4610 35 1 6.5503 -2.7163 5.8367 36 1 6.4567 -3.4543 7.4944 37 1 7.8396 0.8325 7.9884 38 1 9.5461 1.0106 9.7545 39 1 8.5884 -2.9291 11.0774 40 1 6.8773 -3.1049 9.3154 41 1 4.7644 -1.9689 8.9806 42 1 4.1484 -0.6083 7.9460 43 1 2.0048 -3.7339 2.7155 44 1 1.1369 -2.6261 0.6663 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705038_13287726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:32:31 Heat of formation + Delta-G solvation = -118.829337 kcal Electronic energy + Delta-G solvation = -32676.724971 eV Core-core repulsion = 27532.687314 eV Total energy + Delta-G solvation = -5144.037657 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.118 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.22613 -48.75209 -48.70042 -42.02117 -41.34559 -40.24014 -38.92100 -37.84924 -34.94372 -33.74440 -33.02237 -32.52328 -32.05674 -28.32673 -27.48113 -26.70764 -25.23467 -24.97880 -24.16010 -23.71549 -22.45769 -22.01304 -20.24380 -19.59964 -19.53452 -19.43326 -19.24444 -18.58982 -17.73456 -17.33380 -16.67487 -16.62886 -16.47340 -16.34245 -16.11010 -15.91601 -15.86427 -15.54214 -15.50575 -15.26602 -15.15887 -14.94770 -14.86649 -14.82258 -14.57128 -14.43373 -14.33463 -14.30626 -14.27030 -14.04225 -13.56066 -13.45249 -13.25288 -12.78644 -12.54254 -12.38108 -12.18386 -11.92619 -11.78934 -11.48991 -11.24638 -11.05966 -10.69780 -10.56542 -10.35369 -10.10017 -10.04023 -9.92237 -5.00197 -0.60777 -0.12475 0.07414 0.28211 1.25454 1.51592 1.62645 1.64981 1.90761 1.99131 2.41809 2.65544 2.69469 2.93198 2.97463 3.36146 3.43035 3.43691 3.52487 3.61708 3.65061 3.71340 3.79269 3.83472 3.89389 3.94460 3.95369 4.12587 4.19805 4.31918 4.39616 4.41121 4.57715 4.61191 4.68500 4.77863 4.80520 4.85904 4.91002 4.99054 5.01406 5.02827 5.12951 5.19502 5.20469 5.37259 5.45331 5.60812 5.78332 6.26573 6.60434 6.72284 7.03833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.070 4.070 3 Si 0.775 3.225 4 C -0.143 4.143 5 C 0.103 3.897 6 N -0.457 5.457 7 C 0.064 3.936 8 C 0.572 3.428 9 O -0.566 6.566 10 N -0.681 5.681 11 C 0.110 3.890 12 H 0.093 0.907 13 C -0.142 4.142 14 C -0.071 4.071 15 H 0.116 0.884 16 C -0.038 4.038 17 C -0.118 4.118 18 C -0.077 4.077 19 C -0.203 4.203 20 C 0.506 3.494 21 F -0.184 7.184 22 F -0.183 7.183 23 F -0.182 7.182 24 C -0.077 4.077 25 C -0.120 4.120 26 C -0.122 4.122 27 C -0.116 4.116 28 C -0.054 4.054 29 H 0.398 0.602 30 H 0.118 0.882 31 H -0.279 1.279 32 H -0.298 1.298 33 H 0.190 0.810 34 H 0.421 0.579 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.155 0.845 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.153 0.847 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.148 0.852 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.414 4.565 -1.984 6.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.181 4.181 3 Si 0.680 3.320 4 C -0.145 4.145 5 C -0.056 4.056 6 N -0.168 5.168 7 C -0.073 4.073 8 C 0.358 3.642 9 O -0.444 6.444 10 N -0.332 5.332 11 C 0.005 3.995 12 H 0.111 0.889 13 C -0.180 4.180 14 C -0.089 4.089 15 H 0.134 0.866 16 C -0.038 4.038 17 C -0.136 4.136 18 C -0.095 4.095 19 C -0.204 4.204 20 C 0.452 3.548 21 F -0.165 7.165 22 F -0.164 7.164 23 F -0.164 7.164 24 C -0.095 4.095 25 C -0.138 4.138 26 C -0.160 4.160 27 C -0.137 4.137 28 C -0.080 4.080 29 H 0.248 0.752 30 H 0.135 0.865 31 H -0.205 1.205 32 H -0.225 1.225 33 H 0.206 0.794 34 H 0.259 0.741 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.173 0.827 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.170 0.830 41 H 0.126 0.874 42 H 0.108 0.892 43 H 0.166 0.834 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.468 4.451 -2.079 5.498 hybrid contribution 0.177 -0.861 -0.618 1.074 sum -2.291 3.590 -2.697 5.041 Atomic orbital electron populations 1.86514 1.16690 1.82121 1.50598 1.25179 0.85611 1.11019 0.96246 0.93819 0.78114 0.74453 0.85593 1.21770 0.98831 0.95585 0.98350 1.23020 0.93531 1.00786 0.88282 1.67503 1.18368 1.08901 1.22012 1.21068 0.99619 0.90925 0.95726 1.18065 0.77768 0.85597 0.82814 1.90794 1.59666 1.16382 1.77554 1.45448 1.53896 1.14006 1.19860 1.21982 0.95121 0.97686 0.84754 0.88892 1.23580 0.95253 0.97272 1.01907 1.21700 0.92761 0.98883 0.95538 0.86641 1.20122 0.95201 0.93273 0.95180 1.21343 0.95089 0.98794 0.98325 1.21151 0.97412 0.97536 0.93422 1.20032 1.01238 0.99671 0.99461 1.18528 0.81152 0.73347 0.81768 1.93218 1.84292 1.86503 1.52515 1.93181 1.88195 1.40592 1.94435 1.93181 1.61448 1.72194 1.89552 1.21125 0.94106 0.96035 0.98235 1.21251 0.98027 1.00027 0.94477 1.23383 0.94968 0.99794 0.97852 1.22278 0.95702 1.02273 0.93484 1.21732 0.95572 0.94232 0.96473 0.75210 0.86471 1.20507 1.22548 0.79387 0.74096 0.91436 0.87744 0.82706 0.83991 0.84061 0.82991 0.87417 0.89205 0.83439 0.82363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.59 12.84 -148.98 -1.91 0.67 16 2 C -0.07 0.41 2.82 71.24 0.20 0.61 16 3 Si 0.78 -5.60 29.83 68.60 2.05 -3.55 16 4 C -0.14 0.64 5.37 -19.69 -0.11 0.53 16 5 C 0.10 -0.48 9.84 84.82 0.83 0.35 16 6 N -0.46 0.39 9.54 -184.91 -1.76 -1.37 16 7 C 0.06 0.15 6.75 41.91 0.28 0.43 16 8 C 0.57 2.65 7.81 86.88 0.68 3.33 16 9 O -0.57 -6.49 15.92 -3.74 -0.06 -6.55 16 10 N -0.68 0.95 5.26 -442.59 -2.33 -1.37 16 11 C 0.11 -0.34 4.32 45.52 0.20 -0.15 16 12 H 0.09 0.05 7.46 -2.39 -0.02 0.03 16 13 C -0.14 0.67 7.25 31.12 0.23 0.89 16 14 C -0.07 0.52 3.86 -11.02 -0.04 0.47 16 15 H 0.12 -1.08 8.09 -2.39 -0.02 -1.10 16 16 C -0.04 0.17 5.29 -19.87 -0.11 0.07 16 17 C -0.12 0.48 9.71 22.27 0.22 0.70 16 18 C -0.08 0.08 9.40 22.27 0.21 0.29 16 19 C -0.20 -0.31 5.45 -19.86 -0.11 -0.41 16 20 C 0.51 2.16 3.37 71.24 0.24 2.40 16 21 F -0.18 -1.11 17.30 44.97 0.78 -0.34 16 22 F -0.18 -1.01 16.45 44.97 0.74 -0.27 16 23 F -0.18 -0.98 16.46 44.97 0.74 -0.24 16 24 C -0.08 0.06 9.40 22.27 0.21 0.27 16 25 C -0.12 0.46 8.61 22.27 0.19 0.65 16 26 C -0.12 0.92 7.29 31.12 0.23 1.15 16 27 C -0.12 -0.12 9.63 22.61 0.22 0.10 16 28 C -0.05 0.13 9.83 22.45 0.22 0.36 16 29 H 0.40 -5.03 8.70 -74.06 -0.64 -5.67 16 30 H 0.12 -0.61 7.96 -2.39 -0.02 -0.63 16 31 H -0.28 0.76 7.11 99.48 0.71 1.47 16 32 H -0.30 -0.34 7.11 99.48 0.71 0.37 16 33 H 0.19 -1.99 4.92 -2.91 -0.01 -2.00 16 34 H 0.42 -2.09 8.03 -92.71 -0.74 -2.84 16 35 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 36 H 0.10 -0.62 6.31 -2.39 -0.02 -0.64 16 37 H 0.16 -1.34 8.05 -2.91 -0.02 -1.37 16 38 H 0.14 -0.43 7.60 -2.91 -0.02 -0.45 16 39 H 0.14 -0.37 7.60 -2.91 -0.02 -0.39 16 40 H 0.15 -1.16 6.66 -2.91 -0.02 -1.18 16 41 H 0.11 -0.90 7.72 -2.39 -0.02 -0.92 16 42 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 43 H 0.15 0.21 7.64 -2.91 -0.02 0.19 16 44 H 0.16 -0.81 8.06 -2.91 -0.02 -0.84 16 Total: 0.00 -19.66 384.93 1.78 -17.88 By element: Atomic # 1 Polarization: -16.67 SS G_CDS: -0.25 Total: -16.92 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 3.79 Total: 12.05 kcal Atomic # 7 Polarization: 1.35 SS G_CDS: -4.09 Total: -2.75 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -1.97 Total: -5.88 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 2.26 Total: -0.84 kcal Atomic # 14 Polarization: -5.60 SS G_CDS: 2.05 Total: -3.55 kcal Total: -19.66 1.78 -17.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705038_13287726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.950 kcal (2) G-P(sol) polarization free energy of solvation -19.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds