Wall clock time and date at job start Tue Mar 9 2021 13:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37789 * 119.84602 * 2 1 4 4 C 1.39707 * 119.90552 * 179.97438 * 3 2 1 5 5 C 1.47533 * 120.19131 * 179.97438 * 4 3 2 6 6 O 1.21590 * 119.99690 * 179.97438 * 5 4 3 7 7 N 1.34774 * 119.99968 * 0.02562 * 5 4 3 8 8 C 1.46500 * 119.99991 * 179.97438 * 7 5 4 9 9 H 1.09003 * 112.85255 * 25.32915 * 8 7 5 10 10 C 1.53778 * 113.61700 * 156.53017 * 8 7 5 11 11 C 1.53772 * 87.08351 * 89.11313 * 10 8 7 12 12 H 1.09005 * 113.61709 * 270.80227 * 11 10 8 13 13 C 1.50709 * 113.61369 * 139.98150 * 11 10 8 14 14 C 1.38232 * 119.99820 * 299.72620 * 13 11 10 15 15 C 1.38234 * 119.99862 * 179.78543 * 14 13 11 16 16 C 1.38241 * 119.99831 * 0.44548 * 15 14 13 17 17 C 1.50699 * 120.00139 * 179.82998 * 16 15 14 18 18 F 1.39898 * 109.47229 * 269.97973 * 17 16 15 19 19 F 1.39905 * 109.46752 * 29.98086 * 17 16 15 20 20 F 1.39900 * 109.47182 * 149.97534 * 17 16 15 21 21 C 1.38237 * 119.99719 * 359.80882 * 16 15 14 22 22 C 1.38224 * 120.00314 * 359.97438 * 21 16 15 23 23 C 1.53779 * 113.61437 * 254.13775 * 8 7 5 24 24 C 1.40149 * 119.61575 * 359.72698 * 4 3 2 25 25 O 1.35647 * 120.14795 * 180.28745 * 24 4 3 26 26 C 1.38707 * 119.69755 * 0.56679 * 24 4 3 27 27 C 1.50702 * 119.95715 * 179.71143 * 26 24 4 28 28 O 1.42892 * 109.47242 * 74.72118 * 27 26 24 29 29 Si 1.86298 * 109.46915 * 194.72656 * 27 26 24 30 30 C 1.38060 * 120.08555 * 359.43089 * 26 24 4 31 31 H 1.08997 * 109.47479 * 269.97768 * 1 2 3 32 32 H 1.09004 * 109.47045 * 29.98517 * 1 2 3 33 33 H 1.09002 * 109.47018 * 149.97802 * 1 2 3 34 34 H 1.07997 * 120.04765 * 0.02562 * 3 2 1 35 35 H 0.97000 * 120.00109 * 359.97438 * 7 5 4 36 36 H 1.09005 * 113.61343 * 203.66628 * 10 8 7 37 37 H 1.09006 * 113.61337 * 334.56103 * 10 8 7 38 38 H 1.07996 * 120.00213 * 0.02562 * 14 13 11 39 39 H 1.07996 * 120.00617 * 180.27532 * 15 14 13 40 40 H 1.08007 * 119.99519 * 179.97438 * 21 16 15 41 41 H 1.08000 * 120.00463 * 180.02562 * 22 21 16 42 42 H 1.09002 * 113.61917 * 25.42626 * 23 8 7 43 43 H 1.09004 * 113.61735 * 156.33300 * 23 8 7 44 44 H 0.96693 * 114.00893 * 270.27287 * 25 24 4 45 45 H 1.09000 * 109.46724 * 314.72163 * 27 26 24 46 46 H 0.96703 * 114.00176 * 180.02562 * 28 27 26 47 47 H 1.48506 * 109.99834 * 178.68053 * 29 27 26 48 48 H 1.48502 * 110.00011 * 299.99318 * 29 27 26 49 49 H 1.07997 * 119.80178 * 180.25305 * 30 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1928 1.1951 0.0000 4 6 3.5899 1.1966 0.0005 5 6 4.3305 2.4726 0.0000 6 8 5.5464 2.4697 0.0009 7 7 3.6593 3.6413 -0.0005 8 6 4.3947 4.9083 -0.0005 9 1 5.3926 4.8186 -0.4299 10 6 3.5864 6.0898 -0.5623 11 6 3.0796 6.3225 0.8708 12 1 2.1720 5.7676 1.1085 13 6 2.9920 7.7782 1.2512 14 6 4.1282 8.5654 1.2386 15 6 4.0471 9.9016 1.5832 16 6 2.8314 10.4484 1.9493 17 6 2.7436 11.9042 2.3287 18 9 2.9539 12.0410 3.7050 19 9 3.7193 12.6269 1.6337 20 9 1.4760 12.3963 1.9995 21 6 1.6961 9.6598 1.9669 22 6 1.7764 8.3248 1.6180 23 6 4.3703 5.6347 1.3547 24 6 4.2837 -0.0211 0.0069 25 8 5.6401 -0.0322 0.0134 26 6 3.5771 -1.2147 0.0006 27 6 4.3173 -2.5274 0.0008 28 8 4.8545 -2.7711 1.3023 29 14 3.1447 -3.9015 -0.4545 30 6 2.1966 -1.2017 0.0001 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3633 0.8902 -0.5136 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6511 2.1294 0.0004 35 1 2.6893 3.6435 -0.0009 36 1 4.2066 6.9012 -0.9433 37 1 2.8034 5.7910 -1.2593 38 1 5.0786 8.1374 0.9558 39 1 4.9339 10.5178 1.5691 40 1 0.7463 10.0870 2.2534 41 1 0.8894 7.7088 1.6313 42 1 4.2197 4.9689 2.2044 43 1 5.2044 6.3220 1.4968 44 1 6.0378 -0.0335 -0.8680 45 1 5.1290 -2.4868 -0.7255 46 1 5.3455 -3.6010 1.3761 47 1 3.8695 -5.1972 -0.4890 48 1 2.0333 -3.9673 0.5282 49 1 1.6510 -2.1337 -0.0006 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705038_13422088.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:33:08 Heat of formation + Delta-G solvation = -173.308682 kcal Electronic energy + Delta-G solvation = -37540.120169 eV Core-core repulsion = 31984.926210 eV Total energy + Delta-G solvation = -5555.193959 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.138 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -51.23160 -48.75403 -48.71031 -41.93327 -41.22806 -40.07846 -38.82030 -38.04547 -37.72276 -34.86778 -33.29562 -33.05376 -32.24574 -31.97980 -27.96759 -27.51143 -26.77732 -26.71217 -25.70672 -24.61982 -23.93551 -22.45785 -21.80227 -21.62391 -20.26949 -19.59052 -19.54279 -19.49998 -19.36659 -18.62089 -18.40894 -17.62863 -17.26933 -16.73021 -16.54568 -16.33177 -16.00667 -15.96701 -15.82514 -15.55118 -15.50853 -15.41283 -15.18077 -15.14457 -14.96186 -14.94650 -14.87148 -14.58313 -14.48485 -14.42813 -14.33543 -14.07557 -14.05222 -13.74931 -13.46113 -13.24597 -13.09022 -12.98665 -12.78867 -12.63973 -12.38702 -12.37825 -11.92645 -11.85402 -11.78274 -11.73159 -11.24039 -10.93558 -10.47907 -10.26102 -10.06832 -10.01002 -9.92008 -9.49481 -4.96878 -0.34587 -0.13121 0.08141 0.27613 1.23735 1.56580 1.62042 1.70045 1.89944 2.01519 2.41084 2.54728 2.68896 2.96854 3.15307 3.33261 3.35408 3.42591 3.54251 3.63046 3.66087 3.70875 3.82595 3.83381 3.88649 3.95270 4.09816 4.15119 4.20767 4.31183 4.31440 4.39300 4.50553 4.63129 4.64676 4.67873 4.77373 4.80990 4.85586 4.86643 4.90338 4.99075 5.01103 5.02472 5.12427 5.18872 5.19630 5.20862 5.25458 5.43126 5.46525 5.62081 5.68953 5.77853 6.46223 6.54711 6.75208 7.16402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.095 4.095 3 C -0.058 4.058 4 C -0.182 4.182 5 C 0.560 3.440 6 O -0.563 6.563 7 N -0.695 5.695 8 C 0.115 3.885 9 H 0.086 0.914 10 C -0.120 4.120 11 C -0.068 4.068 12 H 0.121 0.879 13 C -0.038 4.038 14 C -0.122 4.122 15 C -0.078 4.078 16 C -0.203 4.203 17 C 0.506 3.494 18 F -0.185 7.185 19 F -0.183 7.183 20 F -0.181 7.181 21 C -0.077 4.077 22 C -0.116 4.116 23 C -0.146 4.146 24 C 0.165 3.835 25 O -0.491 6.491 26 C -0.121 4.121 27 C -0.087 4.087 28 O -0.558 6.558 29 Si 0.780 3.220 30 C -0.081 4.081 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.164 0.836 35 H 0.414 0.586 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.150 0.850 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.158 0.842 42 H 0.064 0.936 43 H 0.099 0.901 44 H 0.402 0.598 45 H 0.085 0.915 46 H 0.392 0.608 47 H -0.288 1.288 48 H -0.286 1.286 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.078 -3.623 -6.154 10.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.096 4.096 3 C -0.077 4.077 4 C -0.185 4.185 5 C 0.348 3.652 6 O -0.442 6.442 7 N -0.348 5.348 8 C 0.009 3.991 9 H 0.104 0.896 10 C -0.158 4.158 11 C -0.087 4.087 12 H 0.139 0.861 13 C -0.038 4.038 14 C -0.139 4.139 15 C -0.096 4.096 16 C -0.204 4.204 17 C 0.452 3.548 18 F -0.167 7.167 19 F -0.164 7.164 20 F -0.163 7.163 21 C -0.095 4.095 22 C -0.134 4.134 23 C -0.185 4.185 24 C 0.118 3.882 25 O -0.303 6.303 26 C -0.122 4.122 27 C -0.194 4.194 28 O -0.367 6.367 29 Si 0.683 3.317 30 C -0.098 4.098 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.182 0.818 35 H 0.253 0.747 36 H 0.122 0.878 37 H 0.113 0.887 38 H 0.167 0.833 39 H 0.158 0.842 40 H 0.161 0.839 41 H 0.176 0.824 42 H 0.083 0.917 43 H 0.117 0.883 44 H 0.262 0.738 45 H 0.103 0.897 46 H 0.242 0.758 47 H -0.215 1.215 48 H -0.213 1.213 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.907 -3.725 -5.193 9.410 hybrid contribution 1.178 0.181 0.830 1.453 sum -5.729 -3.544 -4.363 8.026 Atomic orbital electron populations 1.20925 0.87920 1.04970 1.03541 1.20112 0.98181 0.91665 0.99593 1.21440 0.90935 0.99833 0.95469 1.20406 0.95105 0.92512 1.10501 1.18250 0.86858 0.84279 0.75774 1.90810 1.14999 1.87868 1.50508 1.45435 1.10681 1.04094 1.74582 1.21864 0.96884 0.82708 0.97609 0.89624 1.23365 1.00098 0.96641 0.95696 1.21761 0.99415 0.90632 0.96849 0.86135 1.20137 0.93019 0.95867 0.94806 1.21241 0.99878 0.92513 1.00294 1.21113 0.96300 0.96417 0.95756 1.20031 0.98011 0.91225 1.11125 1.18534 0.73334 0.88546 0.74398 1.93217 1.94625 1.96683 1.32126 1.93184 1.63383 1.80573 1.79254 1.93182 1.41073 1.89695 1.92330 1.21165 0.97437 0.94481 0.96425 1.21350 0.98811 0.94231 0.98994 1.23641 0.98268 0.99222 0.97357 1.18535 0.83565 0.90797 0.95266 1.84758 1.15231 1.96060 1.34252 1.19796 0.94179 0.93504 1.04684 1.25059 1.04456 1.02091 0.87832 1.86596 1.73954 1.45624 1.30560 0.94175 0.76724 0.73464 0.87292 1.21374 0.92324 0.99753 0.96396 0.90409 0.89119 0.90011 0.81815 0.74704 0.87766 0.88659 0.83287 0.84218 0.83911 0.82407 0.91743 0.88288 0.73808 0.89706 0.75781 1.21485 1.21335 0.83471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.13 10.00 71.24 0.71 1.84 16 2 C -0.10 0.39 5.87 -19.90 -0.12 0.27 16 3 C -0.06 0.23 9.18 22.52 0.21 0.44 16 4 C -0.18 -0.57 5.89 -20.01 -0.12 -0.69 16 5 C 0.56 2.96 7.76 86.70 0.67 3.64 16 6 O -0.56 -7.90 14.78 16.92 0.25 -7.65 16 7 N -0.70 2.11 5.21 -443.21 -2.31 -0.20 16 8 C 0.11 -0.37 4.29 45.52 0.20 -0.18 16 9 H 0.09 0.14 7.50 -2.39 -0.02 0.12 16 10 C -0.12 1.03 7.29 31.12 0.23 1.26 16 11 C -0.07 0.56 3.87 -10.92 -0.04 0.52 16 12 H 0.12 -1.40 8.09 -2.38 -0.02 -1.42 16 13 C -0.04 0.19 5.29 -19.86 -0.11 0.09 16 14 C -0.12 0.43 8.63 22.27 0.19 0.62 16 15 C -0.08 0.04 9.40 22.27 0.21 0.25 16 16 C -0.20 -0.29 5.45 -19.86 -0.11 -0.40 16 17 C 0.51 2.16 3.36 71.24 0.24 2.40 16 18 F -0.19 -1.19 17.30 44.97 0.78 -0.42 16 19 F -0.18 -1.00 16.46 44.97 0.74 -0.26 16 20 F -0.18 -0.92 16.46 44.97 0.74 -0.18 16 21 C -0.08 0.11 9.40 22.27 0.21 0.32 16 22 C -0.12 0.57 9.71 22.27 0.22 0.79 16 23 C -0.15 0.60 7.27 31.21 0.23 0.82 16 24 C 0.16 1.05 6.69 22.85 0.15 1.20 16 25 O -0.49 -4.51 10.91 -68.70 -0.75 -5.26 16 26 C -0.12 -0.38 5.30 -19.79 -0.10 -0.48 16 27 C -0.09 -0.10 2.36 71.24 0.17 0.07 16 28 O -0.56 -3.29 12.86 -148.98 -1.92 -5.21 16 29 Si 0.78 -2.38 30.19 68.60 2.07 -0.31 16 30 C -0.08 0.08 8.30 22.30 0.19 0.26 16 31 H 0.08 -0.74 8.14 -2.39 -0.02 -0.75 16 32 H 0.09 -1.17 8.08 -2.38 -0.02 -1.19 16 33 H 0.08 -0.88 8.08 -2.39 -0.02 -0.90 16 34 H 0.16 -1.93 6.40 -2.91 -0.02 -1.95 16 35 H 0.41 -4.08 6.73 -92.71 -0.62 -4.71 16 36 H 0.10 -0.90 7.73 -2.38 -0.02 -0.92 16 37 H 0.09 -1.04 8.14 -2.38 -0.02 -1.06 16 38 H 0.15 -1.01 6.64 -2.91 -0.02 -1.03 16 39 H 0.14 -0.30 7.60 -2.91 -0.02 -0.32 16 40 H 0.14 -0.51 7.61 -2.91 -0.02 -0.53 16 41 H 0.16 -1.59 8.05 -2.91 -0.02 -1.62 16 42 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 43 H 0.10 -0.44 6.30 -2.39 -0.02 -0.46 16 44 H 0.40 0.64 9.06 -74.06 -0.67 -0.03 16 45 H 0.08 -0.16 7.84 -2.39 -0.02 -0.18 16 46 H 0.39 -0.90 8.74 -74.06 -0.65 -1.55 16 47 H -0.29 -0.45 7.11 99.48 0.71 0.26 16 48 H -0.29 -0.63 6.74 99.48 0.67 0.04 16 49 H 0.15 -0.59 4.87 -2.91 -0.01 -0.61 16 Total: 0.00 -27.28 417.13 1.95 -25.33 By element: Atomic # 1 Polarization: -18.02 SS G_CDS: -0.87 Total: -18.89 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 3.22 Total: 13.06 kcal Atomic # 7 Polarization: 2.11 SS G_CDS: -2.31 Total: -0.20 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -2.41 Total: -18.13 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 2.26 Total: -0.86 kcal Atomic # 14 Polarization: -2.38 SS G_CDS: 2.07 Total: -0.31 kcal Total: -27.28 1.95 -25.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705038_13422088.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.984 kcal (2) G-P(sol) polarization free energy of solvation -27.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds