Wall clock time and date at job start Tue Mar 9 2021 13:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86304 * 109.47174 * 2 1 4 4 C 1.50704 * 109.46940 * 119.99855 * 2 1 3 5 5 C 1.31116 * 118.54427 * 249.97664 * 4 2 1 6 6 N 1.38929 * 121.84698 * 179.61970 * 5 4 2 7 7 C 1.47030 * 118.88333 * 13.31333 * 6 5 4 8 8 C 1.50696 * 109.82235 * 196.79693 * 7 6 5 9 9 O 1.21289 * 119.99722 * 18.20935 * 8 7 6 10 10 N 1.34769 * 120.00200 * 198.20662 * 8 7 6 11 11 C 1.46504 * 120.00064 * 179.97438 * 10 8 7 12 12 H 1.08998 * 112.84991 * 336.20071 * 11 10 8 13 13 C 1.53785 * 113.61430 * 107.50666 * 11 10 8 14 14 C 1.53781 * 87.08193 * 89.11506 * 13 11 10 15 15 H 1.09001 * 113.69337 * 270.87425 * 14 13 11 16 16 C 1.50693 * 113.61485 * 139.98228 * 14 13 11 17 17 C 1.38233 * 120.00207 * 142.49943 * 16 14 13 18 18 C 1.38234 * 120.00037 * 179.72405 * 17 16 14 19 19 C 1.38234 * 120.00240 * 0.26327 * 18 17 16 20 20 C 1.50701 * 120.00243 * 180.02562 * 19 18 17 21 21 F 1.39899 * 109.47100 * 89.99820 * 20 19 18 22 22 F 1.39902 * 109.47282 * 209.99784 * 20 19 18 23 23 F 1.39899 * 109.46882 * 329.99960 * 20 19 18 24 24 C 1.38238 * 119.99693 * 359.97438 * 19 18 17 25 25 C 1.38234 * 120.00082 * 0.02562 * 24 19 18 26 26 C 1.53777 * 113.61731 * 205.00186 * 11 10 8 27 27 C 1.53541 * 107.65776 * 316.33883 * 7 6 5 28 28 C 1.50201 * 118.54807 * 70.00331 * 4 2 1 29 29 H 0.96704 * 113.99682 * 300.00665 * 1 2 3 30 30 H 1.08998 * 109.47098 * 239.99841 * 2 1 3 31 31 H 1.48500 * 109.99887 * 299.99583 * 3 2 1 32 32 H 1.48499 * 110.00133 * 61.31758 * 3 2 1 33 33 H 1.08003 * 119.07628 * 359.64060 * 5 4 2 34 34 H 0.97001 * 120.55819 * 193.34180 * 6 5 4 35 35 H 1.09002 * 109.87365 * 75.90470 * 7 6 5 36 36 H 0.96994 * 120.00273 * 0.02562 * 10 8 7 37 37 H 1.09007 * 113.61113 * 334.56927 * 13 11 10 38 38 H 1.08991 * 113.61696 * 203.66942 * 13 11 10 39 39 H 1.08002 * 120.00157 * 0.02562 * 17 16 14 40 40 H 1.07999 * 120.00009 * 180.28389 * 18 17 16 41 41 H 1.08001 * 119.99643 * 179.97438 * 24 19 18 42 42 H 1.07999 * 120.00025 * 179.97438 * 25 24 19 43 43 H 1.08993 * 113.61768 * 156.33816 * 26 11 10 44 44 H 1.09001 * 113.61078 * 25.43350 * 26 11 10 45 45 H 1.09004 * 109.62146 * 180.67181 * 27 7 6 46 46 H 1.08997 * 109.62129 * 301.03660 * 27 7 6 47 47 H 1.08994 * 109.33149 * 79.76521 * 28 4 2 48 48 H 1.09008 * 109.32548 * 320.28576 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.5119 -0.0028 2.1693 6 7 2.9931 -0.5858 3.3349 7 6 3.1183 -2.0494 3.3977 8 6 3.2525 -2.4898 4.8326 9 8 2.9218 -1.7433 5.7295 10 7 3.7399 -3.7131 5.1193 11 6 3.8709 -4.1410 6.5143 12 1 3.9479 -3.3040 7.2083 13 6 2.8363 -5.1986 6.9340 14 6 3.8436 -6.2588 6.4585 15 1 3.7397 -6.5205 5.4055 16 6 3.9184 -7.4663 7.3569 17 6 4.0870 -8.7249 6.8107 18 6 4.1612 -9.8320 7.6352 19 6 4.0614 -9.6811 9.0056 20 6 4.1430 -10.8879 9.9046 21 9 5.4766 -11.1141 10.2617 22 9 3.3832 -10.6628 11.0575 23 9 3.6449 -12.0071 9.2289 24 6 3.8879 -8.4230 9.5516 25 6 3.8136 -7.3159 8.7271 26 6 4.9450 -5.2203 6.7294 27 6 1.8463 -2.6524 2.7847 28 6 1.7451 -2.1977 1.3270 29 1 -0.3933 0.4418 0.7650 30 1 1.7923 -0.5138 -0.8900 31 1 1.5615 2.4679 -1.2086 32 1 1.5879 2.4586 1.2242 33 1 2.6188 1.0632 2.0328 34 1 3.2418 -0.0365 4.0948 35 1 3.9909 -2.3714 2.8292 36 1 4.0047 -4.3100 4.4021 37 1 1.9201 -5.1712 6.3441 38 1 2.6492 -5.2244 8.0074 39 1 4.1656 -8.8428 5.7400 40 1 4.2976 -10.8148 7.2087 41 1 3.8095 -8.3052 10.6223 42 1 3.6776 -6.3331 9.1536 43 1 5.3343 -5.2522 7.7469 44 1 5.7311 -5.2105 5.9744 45 1 1.9003 -3.7404 2.8259 46 1 0.9738 -2.3081 3.3399 47 1 2.5155 -2.6966 0.7391 48 1 0.7645 -2.4648 0.9329 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705038_15413834.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:33:43 Heat of formation + Delta-G solvation = -139.280773 kcal Electronic energy + Delta-G solvation = -34235.222925 eV Core-core repulsion = 29035.675470 eV Total energy + Delta-G solvation = -5199.547455 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.150 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -51.23306 -48.75904 -48.70889 -41.80124 -40.91878 -39.72895 -38.81606 -37.43803 -34.86725 -33.19346 -33.17979 -32.38898 -32.04275 -28.20469 -27.28933 -26.69397 -25.50505 -24.95821 -24.06457 -23.61684 -22.46313 -21.88564 -20.25385 -19.59648 -19.53485 -19.43756 -19.39334 -18.99823 -18.19434 -17.41951 -16.92312 -16.74337 -16.42325 -16.24606 -16.01431 -15.86870 -15.68508 -15.54974 -15.51229 -15.27950 -15.23598 -15.16677 -14.95479 -14.87331 -14.67678 -14.59900 -14.41195 -14.29786 -14.14190 -13.98635 -13.87724 -13.44906 -13.23607 -13.13863 -12.89470 -12.78493 -12.37354 -12.32186 -11.93496 -11.90665 -11.76377 -11.66364 -11.23834 -11.21707 -10.89801 -10.30870 -10.14708 -10.04899 -9.92294 -8.44389 -4.90235 -0.12748 0.27841 1.35137 1.40573 1.47669 1.58542 1.62115 1.88414 2.00434 2.41627 2.65352 2.69061 2.96693 3.35382 3.44998 3.51409 3.61406 3.64489 3.69259 3.80055 3.83885 3.88882 3.89661 3.97124 4.09092 4.20852 4.31409 4.34592 4.39707 4.48625 4.62296 4.65151 4.68255 4.68461 4.78814 4.82882 4.85842 4.87680 5.01786 5.04244 5.07865 5.14258 5.19380 5.20839 5.24383 5.32284 5.46359 5.60271 5.63077 5.78475 6.26139 6.47758 6.61739 6.82537 7.13274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.056 4.056 3 Si 0.746 3.254 4 C -0.280 4.280 5 C 0.137 3.863 6 N -0.737 5.737 7 C 0.139 3.861 8 C 0.516 3.484 9 O -0.575 6.575 10 N -0.692 5.692 11 C 0.115 3.885 12 H 0.085 0.915 13 C -0.144 4.144 14 C -0.069 4.069 15 H 0.123 0.877 16 C -0.038 4.038 17 C -0.116 4.116 18 C -0.078 4.078 19 C -0.203 4.203 20 C 0.505 3.495 21 F -0.184 7.184 22 F -0.183 7.183 23 F -0.182 7.182 24 C -0.079 4.079 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.120 4.120 28 C -0.054 4.054 29 H 0.381 0.619 30 H 0.115 0.885 31 H -0.312 1.312 32 H -0.291 1.291 33 H 0.140 0.860 34 H 0.406 0.594 35 H 0.120 0.880 36 H 0.420 0.580 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.158 0.842 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.150 0.850 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.050 0.950 47 H 0.085 0.915 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.038 -1.069 -3.292 6.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.167 4.167 3 Si 0.655 3.345 4 C -0.290 4.290 5 C 0.016 3.984 6 N -0.369 5.369 7 C 0.030 3.970 8 C 0.302 3.698 9 O -0.454 6.454 10 N -0.344 5.344 11 C 0.009 3.991 12 H 0.103 0.897 13 C -0.183 4.183 14 C -0.087 4.087 15 H 0.141 0.859 16 C -0.038 4.038 17 C -0.134 4.134 18 C -0.096 4.096 19 C -0.204 4.204 20 C 0.451 3.549 21 F -0.166 7.166 22 F -0.165 7.165 23 F -0.164 7.164 24 C -0.097 4.097 25 C -0.139 4.139 26 C -0.161 4.161 27 C -0.159 4.159 28 C -0.091 4.091 29 H 0.229 0.771 30 H 0.133 0.867 31 H -0.242 1.242 32 H -0.219 1.219 33 H 0.156 0.844 34 H 0.242 0.758 35 H 0.137 0.863 36 H 0.258 0.742 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.176 0.824 40 H 0.160 0.840 41 H 0.157 0.843 42 H 0.167 0.833 43 H 0.119 0.881 44 H 0.112 0.888 45 H 0.120 0.880 46 H 0.069 0.931 47 H 0.103 0.897 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.727 -0.210 -3.184 5.703 hybrid contribution -1.220 -0.393 1.065 1.666 sum 3.507 -0.603 -2.120 4.142 Atomic orbital electron populations 1.86542 1.19869 1.80171 1.49938 1.24830 0.82515 1.09804 0.99508 0.94568 0.90939 0.73654 0.75340 1.20916 1.11232 0.97347 0.99554 1.20587 0.93992 0.97190 0.86648 1.44396 1.72417 1.04771 1.15355 1.21143 1.01120 0.82900 0.91859 1.20895 0.75906 0.81795 0.91213 1.90732 1.50363 1.54735 1.49565 1.45477 1.64346 1.16013 1.08601 1.21848 0.97452 0.96607 0.83175 0.89688 1.23573 0.97586 0.94521 1.02584 1.21730 0.97187 0.90177 0.99607 0.85918 1.20160 0.94662 0.95062 0.93959 1.21361 0.99761 0.90897 1.01381 1.21170 0.96069 1.01150 0.91197 1.20027 1.12850 0.92642 0.94891 1.18551 0.73436 0.83794 0.79081 1.93217 1.35386 1.95393 1.92566 1.93182 1.76266 1.94615 1.52400 1.93182 1.87592 1.55665 1.79922 1.21115 0.96143 0.90972 1.01428 1.21244 1.00383 0.99116 0.93183 1.23373 0.96208 0.92220 1.04322 1.21823 0.95548 1.01803 0.96734 1.19978 1.02447 0.91681 0.95016 0.77083 0.86683 1.24150 1.21884 0.84352 0.75754 0.86261 0.74218 0.91142 0.88544 0.82396 0.84008 0.84284 0.83254 0.88130 0.88826 0.87956 0.93142 0.89677 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.17 12.88 -148.98 -1.92 -4.09 16 2 C -0.06 0.02 2.81 71.24 0.20 0.22 16 3 Si 0.75 -0.73 29.95 68.60 2.05 1.33 16 4 C -0.28 0.48 5.37 -16.76 -0.09 0.39 16 5 C 0.14 -0.27 9.62 83.41 0.80 0.53 16 6 N -0.74 1.26 5.47 -329.00 -1.80 -0.54 16 7 C 0.14 -0.72 3.36 44.32 0.15 -0.57 16 8 C 0.52 -0.98 7.10 87.66 0.62 -0.36 16 9 O -0.58 -4.39 15.66 -3.06 -0.05 -4.43 16 10 N -0.69 5.76 5.26 -440.04 -2.32 3.44 16 11 C 0.11 -0.78 4.32 45.52 0.20 -0.58 16 12 H 0.08 -0.13 7.46 -2.39 -0.02 -0.15 16 13 C -0.14 1.08 7.25 31.12 0.23 1.30 16 14 C -0.07 0.73 3.86 -11.02 -0.04 0.68 16 15 H 0.12 -1.73 8.09 -2.39 -0.02 -1.75 16 16 C -0.04 0.25 5.29 -19.87 -0.11 0.15 16 17 C -0.12 0.70 9.71 22.27 0.22 0.92 16 18 C -0.08 0.17 9.40 22.27 0.21 0.38 16 19 C -0.20 -0.14 5.45 -19.86 -0.11 -0.25 16 20 C 0.51 1.88 3.36 71.24 0.24 2.12 16 21 F -0.18 -1.03 17.30 44.97 0.78 -0.25 16 22 F -0.18 -0.94 16.46 44.97 0.74 -0.20 16 23 F -0.18 -0.87 16.46 44.97 0.74 -0.13 16 24 C -0.08 0.12 9.40 22.27 0.21 0.33 16 25 C -0.12 0.59 8.62 22.27 0.19 0.78 16 26 C -0.12 1.31 7.29 31.12 0.23 1.54 16 27 C -0.12 0.60 5.47 30.79 0.17 0.77 16 28 C -0.05 0.19 5.85 29.70 0.17 0.37 16 29 H 0.38 -0.33 8.70 -74.05 -0.64 -0.97 16 30 H 0.12 -0.21 7.96 -2.39 -0.02 -0.23 16 31 H -0.31 -2.42 7.11 99.48 0.71 -1.72 16 32 H -0.29 -0.93 6.84 99.48 0.68 -0.25 16 33 H 0.14 -0.51 4.30 -2.91 -0.01 -0.52 16 34 H 0.41 -0.13 8.08 -92.71 -0.75 -0.88 16 35 H 0.12 -1.22 8.14 -2.39 -0.02 -1.24 16 36 H 0.42 -6.22 8.70 -92.71 -0.81 -7.03 16 37 H 0.07 -0.39 8.14 -2.38 -0.02 -0.41 16 38 H 0.10 -0.69 6.30 -2.39 -0.02 -0.71 16 39 H 0.16 -1.76 8.05 -2.91 -0.02 -1.78 16 40 H 0.14 -0.59 7.60 -2.91 -0.02 -0.61 16 41 H 0.14 -0.41 7.60 -2.91 -0.02 -0.43 16 42 H 0.15 -1.23 6.64 -2.91 -0.02 -1.25 16 43 H 0.10 -1.00 7.73 -2.39 -0.02 -1.02 16 44 H 0.09 -1.17 8.14 -2.39 -0.02 -1.19 16 45 H 0.10 -1.02 8.14 -2.38 -0.02 -1.04 16 46 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 47 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 48 H 0.07 -0.05 8.14 -2.38 -0.02 -0.07 16 Total: 0.00 -20.58 401.17 0.58 -20.00 By element: Atomic # 1 Polarization: -22.70 SS G_CDS: -1.14 Total: -23.84 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 3.49 Total: 8.72 kcal Atomic # 7 Polarization: 7.02 SS G_CDS: -4.11 Total: 2.90 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -1.97 Total: -8.53 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 2.26 Total: -0.59 kcal Atomic # 14 Polarization: -0.73 SS G_CDS: 2.05 Total: 1.33 kcal Total: -20.58 0.58 -20.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705038_15413834.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.280 kcal (2) G-P(sol) polarization free energy of solvation -20.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds