Wall clock time and date at job start Tue Mar 9 2021 13:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35954 * 117.00341 * 2 1 4 4 C 1.39451 * 120.12139 * 180.02562 * 3 2 1 5 5 O 1.34767 * 133.24046 * 359.94907 * 4 3 2 6 6 C 1.34934 * 110.84273 * 180.02562 * 5 4 3 7 7 C 1.46992 * 125.13916 * 180.02562 * 6 5 4 8 8 O 1.21651 * 119.99915 * 179.97438 * 7 6 5 9 9 N 1.34777 * 120.00077 * 359.97438 * 7 6 5 10 10 C 1.46497 * 120.00081 * 179.97438 * 9 7 6 11 11 H 1.09002 * 112.85228 * 334.66995 * 10 9 7 12 12 C 1.53786 * 113.61418 * 105.86080 * 10 9 7 13 13 C 1.54051 * 86.98144 * 89.16454 * 12 10 9 14 14 H 1.09003 * 113.68605 * 270.87136 * 13 12 10 15 15 C 1.50708 * 113.61616 * 139.98264 * 13 12 10 16 16 C 1.38228 * 119.99953 * 322.22633 * 15 13 12 17 17 C 1.38234 * 120.00159 * 179.74774 * 16 15 13 18 18 C 1.38242 * 119.99381 * 0.55020 * 17 16 15 19 19 C 1.50705 * 119.99431 * 179.72575 * 18 17 16 20 20 F 1.39901 * 109.47018 * 269.97716 * 19 18 17 21 21 F 1.39895 * 109.47542 * 29.98077 * 19 18 17 22 22 F 1.39900 * 109.46860 * 149.97958 * 19 18 17 23 23 C 1.38231 * 120.00265 * 359.70656 * 18 17 16 24 24 C 1.38230 * 120.00057 * 0.02562 * 23 18 17 25 25 C 1.53778 * 87.07937 * 25.43459 * 13 12 10 26 26 C 1.35811 * 109.71979 * 0.02562 * 6 5 4 27 27 C 1.40618 * 119.13757 * 179.97438 * 4 3 2 28 28 C 1.39775 * 120.11821 * 359.97438 * 27 4 3 29 29 C 1.50702 * 120.09400 * 179.97438 * 28 27 4 30 30 O 1.42906 * 109.46850 * 74.99959 * 29 28 27 31 31 Si 1.86298 * 109.47174 * 194.99549 * 29 28 27 32 32 C 1.36631 * 119.81277 * 0.03387 * 28 27 4 33 33 C 1.38267 * 120.12384 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.46937 * 300.00491 * 1 2 3 35 35 H 1.09007 * 109.46519 * 59.99762 * 1 2 3 36 36 H 1.08995 * 109.47398 * 179.97438 * 1 2 3 37 37 H 0.96999 * 120.00074 * 0.02562 * 9 7 6 38 38 H 1.08997 * 113.61823 * 203.66633 * 12 10 9 39 39 H 1.09001 * 113.61587 * 334.57263 * 12 10 9 40 40 H 1.08005 * 120.00015 * 0.02562 * 16 15 13 41 41 H 1.07999 * 120.00376 * 180.27807 * 17 16 15 42 42 H 1.07996 * 120.00002 * 180.02562 * 23 18 17 43 43 H 1.07999 * 120.00135 * 179.97438 * 24 23 18 44 44 H 1.09008 * 113.61135 * 220.02343 * 25 13 12 45 45 H 1.08994 * 113.61469 * 89.11794 * 25 13 12 46 46 H 1.07995 * 126.95328 * 179.97438 * 26 6 5 47 47 H 1.08997 * 109.46855 * 314.99727 * 29 28 27 48 48 H 0.96700 * 114.00248 * 59.99876 * 30 29 28 49 49 H 1.48502 * 109.99934 * 58.68488 * 31 29 28 50 50 H 1.48503 * 109.99821 * 179.97438 * 31 29 28 51 51 H 1.08003 * 119.75341 * 179.97438 * 32 28 27 52 52 H 1.08000 * 119.65636 * 0.04499 * 33 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 3.4388 1.2872 -0.0005 5 8 4.4140 0.3571 -0.0002 6 6 5.6318 0.9383 -0.0005 7 6 6.9131 0.2180 -0.0008 8 8 7.9596 0.8382 -0.0015 9 7 6.9285 -1.1297 -0.0004 10 6 8.2055 -1.8476 -0.0013 11 1 9.0190 -1.2639 -0.4319 12 6 8.5550 -2.4848 1.3541 13 6 7.7919 -3.7331 0.8720 14 1 6.7286 -3.7158 1.1109 15 6 8.4562 -5.0312 1.2527 16 6 9.8343 -5.1357 1.2277 17 6 10.4439 -6.3248 1.5819 18 6 9.6747 -7.4128 1.9502 19 6 10.3391 -8.7110 2.3304 20 9 10.4971 -9.5055 1.1898 21 9 11.5928 -8.4464 2.8918 22 9 9.5439 -9.3862 3.2626 23 6 8.2964 -7.3099 1.9701 24 6 7.6871 -6.1192 1.6212 25 6 8.1087 -3.2764 -0.5618 26 6 5.4946 2.2895 -0.0004 27 6 4.0556 2.5508 -0.0011 28 6 3.2768 3.7115 -0.0016 29 6 3.9385 5.0655 -0.0016 30 8 4.4614 5.3400 -1.3029 31 14 2.6866 6.3684 0.4521 32 6 1.9139 3.6150 -0.0009 33 6 1.2959 2.3726 -0.0005 34 1 -0.3633 0.5139 0.8899 35 1 -0.3632 0.5139 -0.8900 36 1 -0.3634 -1.0276 -0.0005 37 1 6.0941 -1.6243 -0.0002 38 1 9.6226 -2.6531 1.4952 39 1 8.0880 -1.9870 2.2039 40 1 10.4350 -4.2870 0.9357 41 1 11.5208 -6.4051 1.5667 42 1 7.6956 -8.1598 2.2582 43 1 6.6102 -6.0389 1.6363 44 1 7.2816 -3.4172 -1.2577 45 1 9.0545 -3.6607 -0.9436 46 1 6.2877 3.0226 -0.0002 47 1 4.7505 5.0730 0.7254 48 1 3.7930 5.3491 -2.0016 49 1 2.1119 6.0766 1.7900 50 1 3.3269 7.7083 0.4562 51 1 1.3131 4.5125 -0.0009 52 1 0.2176 2.3120 -0.0002 There are 81 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 81 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705038_6672420.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:36:06 Heat of formation + Delta-G solvation = -155.633290 kcal Electronic energy + Delta-G solvation = -42740.769619 eV Core-core repulsion = 36611.207650 eV Total energy + Delta-G solvation = -6129.561969 eV No. of doubly occupied orbitals = 81 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 448.138 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -51.24118 -48.76625 -48.71574 -43.78796 -41.72227 -40.79716 -40.35484 -39.08282 -38.99314 -37.00622 -34.97541 -33.68212 -32.83194 -32.11723 -31.88607 -30.97053 -28.62991 -27.91959 -26.76509 -26.35307 -25.70830 -24.63811 -24.01026 -23.95461 -22.48115 -22.12103 -21.79959 -20.32301 -19.89955 -19.59107 -19.52673 -19.39830 -19.05684 -18.54107 -17.85176 -17.73840 -17.52830 -16.94828 -16.82830 -16.59119 -16.46538 -16.21677 -15.95167 -15.83284 -15.81587 -15.73765 -15.55910 -15.45364 -15.17615 -14.97764 -14.88161 -14.87291 -14.69289 -14.57836 -14.53623 -14.45883 -14.35012 -14.18862 -14.11461 -13.57811 -13.51606 -13.40799 -13.33292 -13.25991 -12.82230 -12.42426 -12.40783 -12.29129 -12.09326 -12.00568 -11.91511 -11.86765 -11.64361 -11.30602 -11.04351 -10.45057 -10.36191 -10.07716 -9.96470 -9.84541 -9.01667 -5.00524 -0.70724 -0.15092 0.09003 0.25752 0.57752 1.13329 1.29990 1.60895 1.67812 1.82795 1.83129 2.00308 2.13193 2.38828 2.39146 2.67656 2.95723 3.14099 3.34250 3.36096 3.40778 3.58623 3.61655 3.62381 3.67988 3.78433 3.80357 3.85914 3.86916 3.89924 3.96507 4.14630 4.16325 4.29204 4.33772 4.36428 4.40224 4.43856 4.44599 4.55240 4.65526 4.73830 4.76034 4.78146 4.79268 4.81066 4.85540 4.96055 4.98304 5.03467 5.04314 5.16251 5.17036 5.20481 5.29167 5.39009 5.53976 5.57379 5.75566 6.15552 6.27309 6.77253 6.78385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.333 6.333 3 C 0.137 3.863 4 C 0.021 3.979 5 O -0.179 6.179 6 C -0.033 4.033 7 C 0.606 3.394 8 O -0.544 6.544 9 N -0.686 5.686 10 C 0.110 3.890 11 H 0.098 0.902 12 C -0.141 4.141 13 C -0.073 4.073 14 H 0.113 0.887 15 C -0.038 4.038 16 C -0.119 4.119 17 C -0.076 4.076 18 C -0.202 4.202 19 C 0.506 3.494 20 F -0.184 7.184 21 F -0.182 7.182 22 F -0.182 7.182 23 C -0.077 4.077 24 C -0.119 4.119 25 C -0.122 4.122 26 C -0.115 4.115 27 C -0.100 4.100 28 C -0.108 4.108 29 C -0.080 4.080 30 O -0.555 6.555 31 Si 0.795 3.205 32 C -0.079 4.079 33 C -0.165 4.165 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.418 0.582 38 H 0.108 0.892 39 H 0.068 0.932 40 H 0.154 0.846 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.153 0.847 44 H 0.089 0.911 45 H 0.112 0.888 46 H 0.169 0.831 47 H 0.097 0.903 48 H 0.396 0.604 49 H -0.280 1.280 50 H -0.301 1.301 51 H 0.176 0.824 52 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.580 1.818 -2.699 11.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.247 6.247 3 C 0.091 3.909 4 C -0.027 4.027 5 O -0.081 6.081 6 C -0.083 4.083 7 C 0.392 3.608 8 O -0.423 6.423 9 N -0.336 5.336 10 C 0.005 3.995 11 H 0.116 0.884 12 C -0.179 4.179 13 C -0.091 4.091 14 H 0.131 0.869 15 C -0.038 4.038 16 C -0.137 4.137 17 C -0.094 4.094 18 C -0.203 4.203 19 C 0.452 3.548 20 F -0.165 7.165 21 F -0.164 7.164 22 F -0.164 7.164 23 C -0.095 4.095 24 C -0.136 4.136 25 C -0.159 4.159 26 C -0.136 4.136 27 C -0.101 4.101 28 C -0.109 4.109 29 C -0.189 4.189 30 O -0.363 6.363 31 Si 0.699 3.301 32 C -0.096 4.096 33 C -0.184 4.184 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.133 0.867 37 H 0.255 0.745 38 H 0.126 0.874 39 H 0.087 0.913 40 H 0.171 0.829 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.171 0.829 44 H 0.107 0.893 45 H 0.130 0.870 46 H 0.186 0.814 47 H 0.115 0.885 48 H 0.246 0.754 49 H -0.207 1.207 50 H -0.229 1.229 51 H 0.192 0.808 52 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -9.441 2.316 -1.809 9.887 hybrid contribution 0.614 -1.023 0.517 1.300 sum -8.827 1.293 -1.292 9.014 Atomic orbital electron populations 1.23497 0.75260 1.06034 1.03236 1.86141 1.24348 1.25778 1.88432 1.17991 0.86027 0.86952 0.99966 1.19210 0.88291 0.87004 1.08168 1.84003 1.12631 1.34986 1.76520 1.21914 0.84084 0.92648 1.09674 1.16627 0.84924 0.82772 0.76522 1.90898 1.31394 1.68262 1.51712 1.45517 1.10723 1.04681 1.72689 1.22052 0.85675 0.93347 0.98393 0.88353 1.23639 1.02218 0.95152 0.96924 1.21761 1.00438 0.89965 0.96910 0.86870 1.20098 0.93615 0.95190 0.94901 1.21252 0.94632 0.97723 1.00082 1.21135 1.00882 0.91889 0.95524 1.20033 0.96014 0.93078 1.11194 1.18519 0.76426 0.85411 0.74415 1.93219 1.95626 1.76625 1.51048 1.93182 1.43549 1.93953 1.85682 1.93182 1.73870 1.82472 1.66855 1.21139 0.92403 0.99562 0.96391 1.21329 1.01529 0.91586 0.99206 1.23394 1.04732 0.92099 0.95711 1.22849 0.95472 0.94510 1.00789 1.19602 0.92308 0.93005 1.05176 1.19681 0.93797 0.93915 1.03532 1.25354 1.05820 0.98643 0.89045 1.86505 1.39677 1.93365 1.16753 0.93859 0.80365 0.73157 0.82692 1.20795 0.92419 0.98652 0.97738 1.21435 1.01990 0.89538 1.05395 0.90722 0.90416 0.86684 0.74483 0.87363 0.91314 0.82850 0.83963 0.84009 0.82899 0.89278 0.86991 0.81382 0.88534 0.75430 1.20656 1.22924 0.80771 0.79932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.11 9.81 113.37 1.11 1.00 16 2 O -0.33 -0.31 10.50 -93.04 -0.98 -1.29 16 3 C 0.14 0.22 6.70 22.57 0.15 0.38 16 4 C 0.02 0.13 7.35 23.14 0.17 0.30 16 5 O -0.18 -1.27 10.28 -13.38 -0.14 -1.40 16 6 C -0.03 -0.25 7.07 24.00 0.17 -0.08 16 7 C 0.61 4.26 7.80 86.54 0.67 4.93 16 8 O -0.54 -7.27 16.44 -4.19 -0.07 -7.34 16 9 N -0.69 0.01 5.26 -443.71 -2.33 -2.32 16 10 C 0.11 -0.28 4.29 45.52 0.20 -0.09 16 11 H 0.10 0.05 7.50 -2.39 -0.02 0.04 16 12 C -0.14 0.60 7.27 31.21 0.23 0.83 16 13 C -0.07 0.48 3.87 -10.92 -0.04 0.43 16 14 H 0.11 -0.93 8.09 -2.39 -0.02 -0.95 16 15 C -0.04 0.15 5.29 -19.86 -0.11 0.05 16 16 C -0.12 0.42 8.60 22.27 0.19 0.62 16 17 C -0.08 0.04 9.40 22.27 0.21 0.25 16 18 C -0.20 -0.37 5.45 -19.86 -0.11 -0.48 16 19 C 0.51 2.31 3.36 71.24 0.24 2.55 16 20 F -0.18 -1.17 17.30 44.97 0.78 -0.39 16 21 F -0.18 -1.05 16.46 44.97 0.74 -0.31 16 22 F -0.18 -1.04 16.46 44.97 0.74 -0.30 16 23 C -0.08 0.04 9.40 22.27 0.21 0.25 16 24 C -0.12 0.40 9.71 22.27 0.22 0.62 16 25 C -0.12 0.85 7.29 31.12 0.23 1.08 16 26 C -0.12 -0.92 10.68 23.79 0.25 -0.67 16 27 C -0.10 -0.58 6.16 -20.24 -0.12 -0.71 16 28 C -0.11 -0.06 5.26 -19.87 -0.10 -0.17 16 29 C -0.08 0.01 2.71 71.24 0.19 0.20 16 30 O -0.55 -0.53 12.88 -148.98 -1.92 -2.45 16 31 Si 0.79 -3.37 29.92 68.60 2.05 -1.32 16 32 C -0.08 0.40 8.62 22.02 0.19 0.59 16 33 C -0.17 0.81 9.03 22.40 0.20 1.01 16 34 H 0.07 -0.84 7.66 -2.39 -0.02 -0.86 16 35 H 0.08 -0.91 7.66 -2.38 -0.02 -0.93 16 36 H 0.11 -1.23 8.14 -2.39 -0.02 -1.25 16 37 H 0.42 -1.52 8.42 -92.71 -0.78 -2.30 16 38 H 0.11 -0.64 6.33 -2.39 -0.02 -0.65 16 39 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.15 -1.16 6.68 -2.91 -0.02 -1.18 16 41 H 0.14 -0.35 7.60 -2.91 -0.02 -0.38 16 42 H 0.14 -0.35 7.60 -2.91 -0.02 -0.37 16 43 H 0.15 -1.17 8.05 -2.91 -0.02 -1.19 16 44 H 0.09 -0.69 8.14 -2.38 -0.02 -0.71 16 45 H 0.11 -0.92 7.71 -2.39 -0.02 -0.94 16 46 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 47 H 0.10 0.26 7.96 -2.39 -0.02 0.24 16 48 H 0.40 -3.17 8.70 -74.06 -0.64 -3.81 16 49 H -0.28 -0.01 7.11 99.48 0.71 0.70 16 50 H -0.30 -1.20 7.11 99.48 0.71 -0.49 16 51 H 0.18 -2.19 5.07 -2.91 -0.01 -2.21 16 52 H 0.18 -2.24 6.26 -2.91 -0.02 -2.26 16 Total: 0.00 -25.45 448.64 2.88 -22.57 By element: Atomic # 1 Polarization: -18.00 SS G_CDS: -0.34 Total: -18.34 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 4.35 Total: 12.90 kcal Atomic # 7 Polarization: 0.01 SS G_CDS: -2.33 Total: -2.32 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -3.10 Total: -12.48 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 2.26 Total: -0.99 kcal Atomic # 14 Polarization: -3.37 SS G_CDS: 2.05 Total: -1.32 kcal Total: -25.45 2.88 -22.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705038_6672420.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.064 kcal (2) G-P(sol) polarization free energy of solvation -25.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds