Wall clock time and date at job start Tue Mar 9 2021 13:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39282 * 121.02989 * 2 1 4 4 C 1.46502 * 134.20452 * 359.95501 * 3 2 1 5 5 C 1.50699 * 126.59551 * 0.04587 * 4 3 2 6 6 O 1.42900 * 109.47326 * 75.00072 * 5 4 3 7 7 Si 1.86298 * 109.47031 * 194.99825 * 5 4 3 8 8 C 1.34172 * 106.79977 * 180.02562 * 4 3 2 9 9 N 1.36945 * 109.95714 * 0.02562 * 8 4 3 10 10 C 1.37147 * 110.11115 * 0.02562 * 9 8 4 11 11 N 1.32834 * 132.96475 * 180.30135 * 10 9 8 12 12 C 1.31302 * 121.89012 * 180.23367 * 11 10 9 13 13 C 1.39750 * 121.02980 * 179.97438 * 2 1 3 14 14 C 1.47668 * 120.45348 * 0.03737 * 13 2 1 15 15 O 1.21577 * 119.99850 * 354.01217 * 14 13 2 16 16 N 1.34777 * 120.00053 * 174.01167 * 14 13 2 17 17 C 1.46489 * 120.00072 * 180.02562 * 16 14 13 18 18 H 1.08995 * 112.85212 * 336.19691 * 17 16 14 19 19 C 1.53788 * 113.61420 * 107.50329 * 17 16 14 20 20 C 1.53780 * 87.08077 * 89.11415 * 19 17 16 21 21 H 1.08991 * 113.69401 * 270.87353 * 20 19 17 22 22 C 1.50707 * 113.61225 * 139.97824 * 20 19 17 23 23 C 1.38433 * 120.00949 * 142.50019 * 22 20 19 24 24 F 1.35104 * 120.02908 * 0.03399 * 23 22 20 25 25 C 1.38484 * 119.94807 * 180.02562 * 23 22 20 26 26 C 1.38172 * 119.97503 * 0.02562 * 25 23 22 27 27 C 1.38271 * 120.02459 * 0.02562 * 26 25 23 28 28 C 1.38221 * 120.01413 * 322.23294 * 22 20 19 29 29 C 1.53782 * 113.61647 * 204.99811 * 17 16 14 30 30 H 1.09001 * 109.46983 * 263.73299 * 1 2 3 31 31 H 1.09000 * 109.47105 * 23.73183 * 1 2 3 32 32 H 1.08994 * 109.47229 * 143.73266 * 1 2 3 33 33 H 1.09003 * 109.47465 * 314.99904 * 5 4 3 34 34 H 0.96697 * 113.99794 * 59.99617 * 6 5 4 35 35 H 1.48494 * 110.00321 * 179.97438 * 7 5 4 36 36 H 1.48504 * 109.99888 * 301.32036 * 7 5 4 37 37 H 1.08004 * 125.01976 * 180.02562 * 8 4 3 38 38 H 0.97003 * 124.94326 * 180.02562 * 9 8 4 39 39 H 1.07995 * 119.31402 * 179.70842 * 12 11 10 40 40 H 0.97001 * 119.99667 * 0.02562 * 16 14 13 41 41 H 1.09007 * 113.61051 * 203.66391 * 19 17 16 42 42 H 1.08993 * 113.61467 * 334.56365 * 19 17 16 43 43 H 1.08001 * 120.01160 * 179.97438 * 25 23 22 44 44 H 1.07997 * 119.98606 * 179.97438 * 26 25 23 45 45 H 1.07994 * 119.97525 * 180.02562 * 27 26 25 46 46 H 1.07997 * 119.98553 * 359.97438 * 28 22 20 47 47 H 1.09004 * 113.60939 * 25.43284 * 29 17 16 48 48 H 1.08994 * 113.61761 * 156.24953 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8517 2.6101 -0.0008 5 6 0.4527 3.1705 -0.0010 6 8 -0.1190 3.0248 1.3005 7 14 0.5071 4.9761 -0.4567 8 6 2.9949 3.3125 -0.0009 9 7 4.0669 2.4604 -0.0008 10 6 3.6348 1.1588 -0.0012 11 7 4.2721 -0.0067 0.0039 12 6 3.6267 -1.1502 -0.0024 13 6 2.2275 -1.1975 0.0005 14 6 1.5225 -2.4950 0.0003 15 8 0.3121 -2.5292 0.1094 16 7 2.2208 -3.6414 -0.1210 17 6 1.5214 -4.9285 -0.1218 18 1 0.5529 -4.8843 0.3763 19 6 1.4757 -5.6040 -1.5026 20 6 2.8120 -6.2698 -1.1339 21 1 3.6860 -5.6799 -1.4096 22 6 2.9126 -7.7070 -1.5763 23 6 4.1162 -8.2043 -2.0455 24 9 5.2015 -7.4020 -2.1066 25 6 4.2071 -9.5250 -2.4521 26 6 3.0965 -10.3446 -2.3896 27 6 1.8945 -9.8464 -1.9217 28 6 1.8045 -8.5305 -1.5084 29 6 2.3974 -6.1059 0.3379 30 1 -0.3633 -0.1122 1.0215 31 1 -0.3633 0.9408 -0.4136 32 1 -0.3633 -0.8285 -0.6079 33 1 -0.1549 2.6307 -0.7273 34 1 0.3709 3.4806 1.9985 35 1 -0.8664 5.5405 -0.4611 36 1 1.3585 5.7179 0.5078 37 1 3.0599 4.3906 -0.0011 38 1 4.9967 2.7372 -0.0005 39 1 4.1869 -2.0735 -0.0027 40 1 3.1865 -3.6141 -0.2077 41 1 0.6528 -6.3098 -1.6164 42 1 1.5518 -4.9033 -2.3341 43 1 5.1456 -9.9140 -2.8188 44 1 3.1670 -11.3744 -2.7070 45 1 1.0270 -10.4878 -1.8727 46 1 0.8666 -8.1439 -1.1379 47 1 3.2176 -5.8105 0.9922 48 1 1.8266 -6.9483 0.7285 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705094_12890568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:39:05 Heat of formation + Delta-G solvation = 24.022457 kcal Electronic energy + Delta-G solvation = -34050.359789 eV Core-core repulsion = 29374.008791 eV Total energy + Delta-G solvation = -4676.350998 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.148 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.90231 -42.87869 -41.57664 -40.42072 -39.07406 -38.51391 -37.81926 -35.25533 -34.64159 -32.16326 -31.85859 -31.42017 -30.74457 -28.95123 -26.72691 -26.69690 -26.16501 -24.77954 -24.09695 -23.63849 -22.64059 -22.02892 -20.69951 -20.21092 -19.40104 -18.89570 -18.57831 -17.74744 -17.53749 -17.41883 -17.13830 -16.84159 -16.65060 -16.62079 -16.49429 -16.00938 -15.74235 -15.51591 -15.38999 -15.20702 -15.03239 -14.69092 -14.67939 -14.24505 -14.07707 -14.06268 -13.84796 -13.72758 -13.64146 -13.45745 -13.33040 -13.16808 -12.99237 -12.92942 -12.46698 -12.35222 -11.89454 -11.79058 -11.74214 -11.30684 -11.23639 -11.15374 -10.57113 -10.27782 -10.16398 -9.86617 -9.64435 -9.56016 -9.14132 -4.84140 -0.36474 -0.10104 0.19598 0.26031 1.34933 1.40432 1.61941 1.67252 1.76255 2.00606 2.04701 2.61925 2.73141 3.27634 3.29263 3.42685 3.44861 3.54905 3.60361 3.60648 3.66084 3.70193 3.72840 3.84859 3.94847 4.10941 4.11898 4.18883 4.24861 4.28487 4.37259 4.37955 4.39987 4.58912 4.63863 4.70843 4.75495 4.78877 4.84666 4.87961 4.97877 5.00363 5.01336 5.09326 5.13024 5.19475 5.24006 5.26670 5.37292 5.42652 5.50062 5.60455 5.71956 5.96761 6.20218 6.43265 6.59241 6.81124 7.13320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.064 3.936 3 C -0.164 4.164 4 C -0.196 4.196 5 C -0.059 4.059 6 O -0.549 6.549 7 Si 0.779 3.221 8 C 0.090 3.910 9 N -0.560 5.560 10 C 0.288 3.712 11 N -0.517 5.517 12 C 0.179 3.821 13 C -0.241 4.241 14 C 0.574 3.426 15 O -0.562 6.562 16 N -0.699 5.699 17 C 0.119 3.881 18 H 0.096 0.904 19 C -0.137 4.137 20 C -0.074 4.074 21 H 0.097 0.903 22 C -0.110 4.110 23 C 0.072 3.928 24 F -0.151 7.151 25 C -0.164 4.164 26 C -0.100 4.100 27 C -0.128 4.128 28 C -0.094 4.094 29 C -0.123 4.123 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.385 0.615 35 H -0.308 1.308 36 H -0.259 1.259 37 H 0.221 0.779 38 H 0.438 0.562 39 H 0.190 0.810 40 H 0.411 0.589 41 H 0.107 0.893 42 H 0.066 0.934 43 H 0.141 0.859 44 H 0.152 0.848 45 H 0.151 0.849 46 H 0.151 0.849 47 H 0.084 0.916 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.977 0.740 -1.759 3.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.055 3.945 3 C -0.171 4.171 4 C -0.203 4.203 5 C -0.167 4.167 6 O -0.357 6.357 7 Si 0.682 3.318 8 C -0.037 4.037 9 N -0.166 5.166 10 C 0.055 3.945 11 N -0.230 5.230 12 C 0.011 3.989 13 C -0.248 4.248 14 C 0.363 3.637 15 O -0.442 6.442 16 N -0.350 5.350 17 C 0.014 3.986 18 H 0.115 0.885 19 C -0.175 4.175 20 C -0.092 4.092 21 H 0.115 0.885 22 C -0.111 4.111 23 C 0.053 3.947 24 F -0.130 7.130 25 C -0.183 4.183 26 C -0.118 4.118 27 C -0.146 4.146 28 C -0.112 4.112 29 C -0.161 4.161 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.129 0.871 34 H 0.234 0.766 35 H -0.236 1.236 36 H -0.185 1.185 37 H 0.237 0.763 38 H 0.280 0.720 39 H 0.207 0.793 40 H 0.249 0.751 41 H 0.125 0.875 42 H 0.085 0.915 43 H 0.158 0.842 44 H 0.169 0.831 45 H 0.169 0.831 46 H 0.169 0.831 47 H 0.102 0.898 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.625 1.365 -1.746 3.436 hybrid contribution 0.426 -0.256 1.063 1.174 sum 3.051 1.109 -0.682 3.317 Atomic orbital electron populations 1.21005 0.89236 1.03442 1.03077 1.20068 0.97089 0.90109 0.87226 1.19739 0.93193 0.94424 1.09786 1.20714 0.96141 0.90193 1.13265 1.24804 0.90552 1.13716 0.87639 1.86605 1.55022 1.76686 1.17397 0.94114 0.79231 0.70118 0.88339 1.22330 0.83982 0.97208 1.00138 1.41606 1.10626 1.01709 1.62682 1.18778 0.89553 0.86823 0.99384 1.66507 1.40893 0.96498 1.19083 1.22914 0.89759 0.95237 0.91014 1.20482 0.95358 0.93374 1.15618 1.17964 0.86458 0.83858 0.75449 1.90741 1.14915 1.87408 1.51095 1.45477 1.11043 1.04596 1.73921 1.21848 0.97167 0.81945 0.97635 0.88543 1.23559 0.97184 0.99498 0.97287 1.21519 0.99154 0.91266 0.97287 0.88459 1.19898 0.92472 0.97161 1.01584 1.17910 0.83655 0.89523 1.03630 1.91450 1.53571 1.73460 1.94515 1.21409 1.01600 0.92292 1.02981 1.21360 0.91833 1.00739 0.97848 1.21587 0.98781 0.95891 0.98351 1.21202 0.98183 0.93429 0.98381 1.23397 0.99942 0.97655 0.95087 0.91110 0.90571 0.89788 0.87079 0.76638 1.23575 1.18461 0.76300 0.72047 0.79325 0.75141 0.87486 0.91529 0.84157 0.83070 0.83099 0.83113 0.89767 0.87209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 8.69 71.24 0.62 -0.35 16 2 C 0.06 0.52 5.98 -19.25 -0.12 0.40 16 3 C -0.16 -0.97 6.16 -20.19 -0.12 -1.09 16 4 C -0.20 -0.03 5.57 -18.64 -0.10 -0.13 16 5 C -0.06 0.04 2.06 71.24 0.15 0.18 16 6 O -0.55 -1.61 12.88 -148.98 -1.92 -3.53 16 7 Si 0.78 -3.96 30.83 68.60 2.11 -1.84 16 8 C 0.09 -0.48 10.44 82.97 0.87 0.38 16 9 N -0.56 1.59 6.04 -192.25 -1.16 0.43 16 10 C 0.29 1.34 8.42 134.02 1.13 2.46 16 11 N -0.52 -2.90 10.37 -191.75 -1.99 -4.89 16 12 C 0.18 0.52 10.67 85.20 0.91 1.43 16 13 C -0.24 -1.48 5.89 -19.99 -0.12 -1.60 16 14 C 0.57 3.79 7.72 86.73 0.67 4.46 16 15 O -0.56 -7.32 13.09 -3.96 -0.05 -7.37 16 16 N -0.70 -0.05 5.21 -443.08 -2.31 -2.36 16 17 C 0.12 -0.09 4.32 45.52 0.20 0.11 16 18 H 0.10 0.23 7.46 -2.39 -0.02 0.21 16 19 C -0.14 0.22 7.25 31.12 0.23 0.44 16 20 C -0.07 0.12 3.78 -11.01 -0.04 0.08 16 21 H 0.10 -0.09 7.45 -2.39 -0.02 -0.11 16 22 C -0.11 -0.07 5.29 -19.82 -0.10 -0.18 16 23 C 0.07 0.27 7.25 22.37 0.16 0.43 16 24 F -0.15 -0.98 16.36 44.97 0.74 -0.24 16 25 C -0.16 -0.22 10.03 22.31 0.22 0.01 16 26 C -0.10 0.19 10.04 22.26 0.22 0.41 16 27 C -0.13 0.39 10.04 22.27 0.22 0.61 16 28 C -0.09 0.22 8.60 22.26 0.19 0.41 16 29 C -0.12 0.46 7.29 31.12 0.23 0.69 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 0.49 5.05 -2.39 -0.01 0.48 16 32 H 0.08 0.93 5.95 -2.39 -0.01 0.92 16 33 H 0.11 0.03 6.05 -2.39 -0.01 0.01 16 34 H 0.38 -1.28 8.70 -74.06 -0.64 -1.93 16 35 H -0.31 -1.25 7.11 99.48 0.71 -0.54 16 36 H -0.26 1.22 7.00 99.48 0.70 1.92 16 37 H 0.22 -2.93 6.28 -2.91 -0.02 -2.95 16 38 H 0.44 -3.62 8.96 -92.71 -0.83 -4.46 16 39 H 0.19 -0.87 6.43 -2.91 -0.02 -0.89 16 40 H 0.41 -2.00 6.78 -92.71 -0.63 -2.62 16 41 H 0.11 -0.39 6.33 -2.38 -0.02 -0.41 16 42 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.14 -0.13 8.06 -2.91 -0.02 -0.15 16 44 H 0.15 -0.96 8.06 -2.91 -0.02 -0.99 16 45 H 0.15 -1.14 8.06 -2.91 -0.02 -1.16 16 46 H 0.15 -0.97 6.68 -2.91 -0.02 -0.99 16 47 H 0.08 -0.38 8.14 -2.38 -0.02 -0.39 16 48 H 0.11 -0.58 7.72 -2.39 -0.02 -0.60 16 Total: 0.00 -24.30 392.82 -0.17 -24.47 By element: Atomic # 1 Polarization: -12.86 SS G_CDS: -1.00 Total: -13.85 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.41 Total: 9.18 kcal Atomic # 7 Polarization: -1.36 SS G_CDS: -5.46 Total: -6.81 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -1.97 Total: -10.90 kcal Atomic # 9 Polarization: -0.98 SS G_CDS: 0.74 Total: -0.24 kcal Atomic # 14 Polarization: -3.96 SS G_CDS: 2.11 Total: -1.84 kcal Total: -24.30 -0.17 -24.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705094_12890568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.493 kcal (2) G-P(sol) polarization free energy of solvation -24.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds