Wall clock time and date at job start Tue Mar 9 2021 13:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86302 * 109.46870 * 2 1 4 4 C 1.50702 * 109.47020 * 119.99585 * 2 1 3 5 5 C 1.38340 * 119.87093 * 245.23393 * 4 2 1 6 6 C 1.37999 * 120.12302 * 180.23609 * 5 4 2 7 7 C 1.39407 * 119.87420 * 359.51100 * 6 5 4 8 8 C 1.48277 * 120.12874 * 180.28110 * 7 6 5 9 9 C 1.39499 * 119.97388 * 359.72242 * 8 7 6 10 10 C 1.37671 * 120.02476 * 179.72734 * 9 8 7 11 11 C 1.39714 * 119.96992 * 0.53068 * 10 9 8 12 12 C 1.47723 * 120.01838 * 179.77081 * 11 10 9 13 13 O 1.21566 * 119.99493 * 179.97438 * 12 11 10 14 14 N 1.34771 * 120.00086 * 359.97155 * 12 11 10 15 15 C 1.46505 * 119.99690 * 180.02562 * 14 12 11 16 16 H 1.08993 * 112.84964 * 25.33338 * 15 14 12 17 17 C 1.53780 * 113.61541 * 156.53204 * 15 14 12 18 18 C 1.53774 * 87.08229 * 89.11358 * 17 15 14 19 19 H 1.08997 * 113.62034 * 270.80102 * 18 17 15 20 20 C 1.50703 * 113.61544 * 139.98237 * 18 17 15 21 21 C 1.38432 * 120.01271 * 119.72435 * 20 18 17 22 22 F 1.35094 * 120.03086 * 0.02562 * 21 20 18 23 23 C 1.38485 * 119.94448 * 179.72755 * 21 20 18 24 24 C 1.38177 * 119.97638 * 0.57640 * 23 21 20 25 25 C 1.38271 * 120.02339 * 359.69549 * 24 23 21 26 26 C 1.38219 * 120.04970 * 0.02562 * 25 24 23 27 27 C 1.53779 * 113.61354 * 254.13923 * 15 14 12 28 28 C 1.39703 * 119.95329 * 359.74343 * 11 10 9 29 29 C 1.37667 * 119.97591 * 0.02562 * 28 11 10 30 30 C 1.39407 * 119.74230 * 0.25342 * 7 6 5 31 31 C 1.37995 * 119.87227 * 0.02562 * 30 7 6 32 32 H 0.96696 * 113.99998 * 300.00525 * 1 2 3 33 33 H 1.08994 * 109.47437 * 239.99870 * 2 1 3 34 34 H 1.48497 * 109.99973 * 299.99492 * 3 2 1 35 35 H 1.48498 * 110.00384 * 61.31745 * 3 2 1 36 36 H 1.07998 * 119.93673 * 0.02562 * 5 4 2 37 37 H 1.08002 * 120.06557 * 179.79370 * 6 5 4 38 38 H 1.07999 * 119.99026 * 0.02562 * 9 8 7 39 39 H 1.07996 * 120.01195 * 180.25326 * 10 9 8 40 40 H 0.96994 * 120.00748 * 0.02562 * 14 12 11 41 41 H 1.08997 * 113.61672 * 203.66612 * 17 15 14 42 42 H 1.09007 * 113.61373 * 334.48216 * 17 15 14 43 43 H 1.08002 * 120.01165 * 180.29385 * 23 21 20 44 44 H 1.07997 * 119.98785 * 179.73029 * 24 23 21 45 45 H 1.07993 * 119.97223 * 180.02562 * 25 24 23 46 46 H 1.07998 * 119.98417 * 180.02562 * 26 25 24 47 47 H 1.08999 * 113.61963 * 25.43339 * 27 15 14 48 48 H 1.08999 * 113.61389 * 156.33594 * 27 15 14 49 49 H 1.07993 * 120.01096 * 179.97438 * 28 11 10 50 50 H 1.07998 * 119.98613 * 179.97438 * 29 28 11 51 51 H 1.08002 * 120.05807 * 180.02562 * 30 7 6 52 52 H 1.08004 * 119.93672 * 179.97438 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.6348 -0.0080 2.1926 6 6 3.1014 -0.6542 3.3191 7 6 2.8538 -2.0153 3.4915 8 6 3.3471 -2.7140 4.7027 9 6 4.0654 -2.0101 5.6694 10 6 4.5191 -2.6565 6.7970 11 6 4.2694 -4.0205 6.9677 12 6 4.7601 -4.7163 8.1749 13 8 4.5422 -5.9030 8.3231 14 7 5.4494 -4.0354 9.1117 15 6 5.9365 -4.7257 10.3086 16 1 6.0827 -5.7942 10.1510 17 6 7.1361 -4.0315 10.9748 18 6 6.1143 -3.2232 11.7918 19 1 5.8016 -2.2982 11.3074 20 6 6.5142 -3.0239 13.2311 21 6 6.6884 -1.7446 13.7305 22 9 6.4997 -0.6741 12.9284 23 6 7.0503 -1.5629 15.0548 24 6 7.2487 -2.6587 15.8729 25 6 7.0798 -3.9361 15.3714 26 6 6.7130 -4.1185 14.0513 27 6 5.1363 -4.3944 11.5794 28 6 3.5549 -4.7257 5.9962 29 6 3.0981 -4.0762 4.8716 30 6 2.1401 -2.7168 2.5209 31 6 1.6834 -2.0612 1.3957 32 1 -0.3933 0.4418 0.7650 33 1 1.7924 -0.5138 -0.8899 34 1 1.5615 2.4679 -1.2085 35 1 1.5878 2.4587 1.2242 36 1 2.8221 1.0474 2.0602 37 1 3.6533 -0.1057 4.0681 38 1 4.2616 -0.9565 5.5355 39 1 5.0717 -2.1104 7.5472 40 1 5.6230 -3.0885 8.9936 41 1 7.7473 -4.7011 11.5799 42 1 7.7261 -3.4246 10.2879 43 1 7.1820 -0.5652 15.4469 44 1 7.5352 -2.5173 16.9045 45 1 7.2347 -4.7919 16.0116 46 1 6.5810 -5.1167 13.6608 47 1 4.1120 -4.0791 11.3806 48 1 5.2018 -5.1630 12.3494 49 1 3.3617 -5.7801 6.1269 50 1 2.5460 -4.6212 4.1202 51 1 1.9451 -3.7712 2.6494 52 1 1.1308 -2.6037 0.6429 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705094_13158362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:39:10 Heat of formation + Delta-G solvation = 4.275435 kcal Electronic energy + Delta-G solvation = -35102.393087 eV Core-core repulsion = 30299.585335 eV Total energy + Delta-G solvation = -4802.807752 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.157 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.91492 -41.77261 -41.04519 -40.40075 -39.37675 -38.63810 -37.64058 -34.91668 -33.92428 -32.59981 -31.97495 -31.51738 -31.41128 -30.68045 -27.22980 -26.76519 -26.21614 -24.66714 -24.58610 -23.72768 -22.83051 -22.52672 -22.35693 -21.37408 -20.25288 -19.29231 -18.75429 -18.51629 -17.78415 -17.45651 -17.28773 -16.91657 -16.78158 -16.63874 -16.39806 -16.19502 -16.11689 -15.87036 -15.46399 -15.37145 -15.25162 -15.05623 -14.95667 -14.94677 -14.59019 -14.35873 -14.30397 -14.12721 -13.98851 -13.88809 -13.56516 -13.49771 -13.22853 -13.02565 -13.00785 -12.79277 -12.60809 -12.37681 -12.06814 -11.94772 -11.93068 -11.78502 -11.52756 -11.26512 -11.14870 -10.78440 -10.59282 -10.19063 -10.07857 -9.95965 -9.87777 -9.57596 -9.09050 -4.92691 -0.70636 0.18273 0.24793 0.33527 0.40044 0.48838 1.30188 1.58616 1.75237 1.95563 1.98644 2.58430 2.60838 2.99314 3.26377 3.36607 3.40127 3.45225 3.57370 3.60010 3.62862 3.68912 3.76499 3.82453 3.87311 3.91681 4.00313 4.04989 4.09210 4.16343 4.24026 4.28553 4.36030 4.36650 4.38710 4.53560 4.59130 4.64053 4.66847 4.72127 4.79009 4.85592 4.89800 4.91167 4.94971 4.98263 5.06938 5.08034 5.11275 5.12677 5.19729 5.24086 5.26506 5.39049 5.39971 5.48905 5.49521 5.55617 5.64789 5.78357 5.92697 5.95511 6.40348 6.46276 7.08179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.086 4.086 3 Si 0.769 3.231 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.102 4.102 7 C -0.060 4.060 8 C -0.022 4.022 9 C -0.118 4.118 10 C -0.075 4.075 11 C -0.152 4.152 12 C 0.560 3.440 13 O -0.578 6.578 14 N -0.697 5.697 15 C 0.115 3.885 16 H 0.093 0.907 17 C -0.121 4.121 18 C -0.072 4.072 19 H 0.098 0.902 20 C -0.111 4.111 21 C 0.073 3.927 22 F -0.150 7.150 23 C -0.164 4.164 24 C -0.100 4.100 25 C -0.128 4.128 26 C -0.095 4.095 27 C -0.138 4.138 28 C -0.070 4.070 29 C -0.124 4.124 30 C -0.113 4.113 31 C -0.102 4.102 32 H 0.386 0.614 33 H 0.124 0.876 34 H -0.306 1.306 35 H -0.279 1.279 36 H 0.146 0.854 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.413 0.587 41 H 0.110 0.890 42 H 0.086 0.914 43 H 0.141 0.859 44 H 0.152 0.848 45 H 0.151 0.849 46 H 0.150 0.850 47 H 0.065 0.935 48 H 0.106 0.894 49 H 0.128 0.872 50 H 0.144 0.856 51 H 0.138 0.862 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.623 2.923 2.659 6.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.195 4.195 3 Si 0.674 3.326 4 C -0.115 4.115 5 C -0.138 4.138 6 C -0.119 4.119 7 C -0.060 4.060 8 C -0.022 4.022 9 C -0.136 4.136 10 C -0.093 4.093 11 C -0.155 4.155 12 C 0.349 3.651 13 O -0.458 6.458 14 N -0.348 5.348 15 C 0.010 3.990 16 H 0.111 0.889 17 C -0.159 4.159 18 C -0.091 4.091 19 H 0.117 0.883 20 C -0.112 4.112 21 C 0.054 3.946 22 F -0.129 7.129 23 C -0.182 4.182 24 C -0.117 4.117 25 C -0.146 4.146 26 C -0.113 4.113 27 C -0.177 4.177 28 C -0.089 4.089 29 C -0.142 4.142 30 C -0.130 4.130 31 C -0.121 4.121 32 H 0.235 0.765 33 H 0.141 0.859 34 H -0.235 1.235 35 H -0.206 1.206 36 H 0.163 0.837 37 H 0.171 0.829 38 H 0.177 0.823 39 H 0.173 0.827 40 H 0.252 0.748 41 H 0.128 0.872 42 H 0.105 0.895 43 H 0.159 0.841 44 H 0.169 0.831 45 H 0.169 0.831 46 H 0.168 0.832 47 H 0.084 0.916 48 H 0.125 0.875 49 H 0.146 0.854 50 H 0.162 0.838 51 H 0.155 0.845 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.364 2.647 2.208 5.561 hybrid contribution -1.377 0.353 0.255 1.444 sum 2.987 3.000 2.463 4.897 Atomic orbital electron populations 1.86581 1.18587 1.80395 1.50177 1.25278 0.83397 1.11999 0.98775 0.94041 0.90276 0.71942 0.76329 1.20455 0.99356 0.94872 0.96853 1.21206 0.98226 1.00500 0.93859 1.21491 0.99103 0.93255 0.98070 1.18938 0.99158 0.94075 0.93804 1.19151 0.96178 0.93244 0.93636 1.21487 0.97570 1.01578 0.92931 1.21474 0.97572 0.92230 0.98054 1.19977 1.04341 0.95357 0.95856 1.18535 0.77318 0.86134 0.83128 1.90770 1.58763 1.17002 1.79299 1.45509 1.55526 1.13681 1.20107 1.21878 0.95538 0.97705 0.83871 0.88900 1.23377 0.95498 0.98769 0.98224 1.21554 0.97721 0.98867 0.90930 0.88335 1.19878 1.02576 0.91557 0.97141 1.17887 1.03954 0.83289 0.89473 1.91446 1.93091 1.54918 1.73461 1.21416 1.02859 1.01752 0.92214 1.21365 0.97852 0.91731 1.00789 1.21584 0.99013 0.98198 0.95823 1.21198 0.97716 0.98823 0.93529 1.23609 0.98348 0.97981 0.97729 1.21246 0.94615 1.00448 0.92571 1.21371 1.00735 0.94111 0.97961 1.21507 0.97259 1.00803 0.93471 1.21085 0.99011 0.94150 0.97807 0.76499 0.85857 1.23463 1.20576 0.83666 0.82866 0.82253 0.82669 0.74840 0.87189 0.89549 0.84081 0.83057 0.83129 0.83216 0.91650 0.87539 0.85425 0.83798 0.84462 0.85292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.23 12.83 -148.98 -1.91 -3.14 16 2 C -0.09 0.11 2.80 71.24 0.20 0.31 16 3 Si 0.77 -2.28 29.88 68.60 2.05 -0.23 16 4 C -0.12 0.12 5.36 -19.82 -0.11 0.02 16 5 C -0.12 0.38 8.65 22.24 0.19 0.57 16 6 C -0.10 0.33 9.43 22.49 0.21 0.54 16 7 C -0.06 0.04 5.88 -20.04 -0.12 -0.08 16 8 C -0.02 0.01 5.88 -20.00 -0.12 -0.11 16 9 C -0.12 0.41 9.41 22.44 0.21 0.62 16 10 C -0.07 0.23 9.52 22.49 0.21 0.44 16 11 C -0.15 -0.44 5.88 -20.06 -0.12 -0.56 16 12 C 0.56 3.33 7.77 86.75 0.67 4.01 16 13 O -0.58 -8.26 15.95 -3.92 -0.06 -8.32 16 14 N -0.70 0.41 5.21 -443.03 -2.31 -1.90 16 15 C 0.12 -0.10 4.30 45.52 0.20 0.10 16 16 H 0.09 0.25 7.50 -2.39 -0.02 0.23 16 17 C -0.12 0.54 7.29 31.12 0.23 0.77 16 18 C -0.07 0.17 3.79 -10.92 -0.04 0.13 16 19 H 0.10 -0.19 7.45 -2.39 -0.02 -0.21 16 20 C -0.11 0.00 5.29 -19.82 -0.10 -0.10 16 21 C 0.07 0.21 7.25 22.38 0.16 0.38 16 22 F -0.15 -0.79 16.37 44.97 0.74 -0.06 16 23 C -0.16 -0.09 10.03 22.31 0.22 0.13 16 24 C -0.10 0.25 10.04 22.26 0.22 0.47 16 25 C -0.13 0.45 10.04 22.27 0.22 0.67 16 26 C -0.09 0.26 8.61 22.26 0.19 0.45 16 27 C -0.14 0.23 7.27 31.21 0.23 0.46 16 28 C -0.07 -0.28 9.58 22.49 0.22 -0.07 16 29 C -0.12 -0.13 9.41 22.44 0.21 0.08 16 30 C -0.11 0.03 9.43 22.49 0.21 0.24 16 31 C -0.10 -0.02 9.67 22.23 0.21 0.20 16 32 H 0.39 -1.27 8.70 -74.06 -0.64 -1.91 16 33 H 0.12 -0.32 7.96 -2.39 -0.02 -0.34 16 34 H -0.31 -1.64 7.11 99.48 0.71 -0.93 16 35 H -0.28 -0.04 7.00 99.48 0.70 0.65 16 36 H 0.15 -0.99 4.82 -2.91 -0.01 -1.01 16 37 H 0.15 -1.30 6.19 -2.91 -0.02 -1.32 16 38 H 0.16 -1.45 6.19 -2.91 -0.02 -1.47 16 39 H 0.16 -1.46 6.39 -2.91 -0.02 -1.48 16 40 H 0.41 -2.55 6.72 -92.71 -0.62 -3.17 16 41 H 0.11 -0.65 7.72 -2.39 -0.02 -0.67 16 42 H 0.09 -0.48 8.14 -2.38 -0.02 -0.50 16 43 H 0.14 -0.25 8.06 -2.91 -0.02 -0.27 16 44 H 0.15 -1.05 8.06 -2.91 -0.02 -1.07 16 45 H 0.15 -1.19 8.06 -2.91 -0.02 -1.22 16 46 H 0.15 -1.00 6.66 -2.91 -0.02 -1.02 16 47 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 48 H 0.11 -0.38 6.32 -2.39 -0.02 -0.40 16 49 H 0.13 0.72 7.64 -2.91 -0.02 0.70 16 50 H 0.14 -0.31 6.19 -2.91 -0.02 -0.32 16 51 H 0.14 -0.39 6.19 -2.91 -0.02 -0.41 16 52 H 0.13 -0.06 8.06 -2.91 -0.02 -0.09 16 Total: 0.00 -22.06 428.05 1.89 -20.17 By element: Atomic # 1 Polarization: -15.95 SS G_CDS: -0.23 Total: -16.18 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 3.62 Total: 9.66 kcal Atomic # 7 Polarization: 0.41 SS G_CDS: -2.31 Total: -1.90 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -1.97 Total: -11.47 kcal Atomic # 9 Polarization: -0.79 SS G_CDS: 0.74 Total: -0.06 kcal Atomic # 14 Polarization: -2.28 SS G_CDS: 2.05 Total: -0.23 kcal Total: -22.06 1.89 -20.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705094_13158362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.445 kcal (2) G-P(sol) polarization free energy of solvation -22.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds