Wall clock time and date at job start Tue Mar 9 2021 13:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86295 * 109.47185 * 2 1 4 4 C 1.50707 * 109.46767 * 240.00435 * 2 1 3 5 5 C 1.38357 * 120.34656 * 299.99829 * 4 2 1 6 6 C 1.40021 * 118.28790 * 179.97438 * 5 4 2 7 7 C 1.47836 * 120.56179 * 180.02562 * 6 5 4 8 8 O 1.21553 * 119.99753 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00360 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00054 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.85131 * 23.80210 * 10 9 7 12 12 C 1.53784 * 113.61535 * 155.00230 * 10 9 7 13 13 C 1.53774 * 87.08159 * 89.11286 * 12 10 9 14 14 H 1.09010 * 113.61388 * 270.88413 * 13 12 10 15 15 C 1.50696 * 113.61446 * 139.98488 * 13 12 10 16 16 C 1.38444 * 120.01651 * 119.99780 * 15 13 12 17 17 F 1.35102 * 120.02275 * 0.02562 * 16 15 13 18 18 C 1.38478 * 119.95050 * 180.02562 * 16 15 13 19 19 C 1.38182 * 119.97337 * 359.97438 * 18 16 15 20 20 C 1.38262 * 120.02388 * 0.02562 * 19 18 16 21 21 C 1.38220 * 120.01266 * 299.72642 * 15 13 12 22 22 C 1.53775 * 87.08260 * 25.43054 * 13 12 10 23 23 C 1.39523 * 118.88112 * 0.02562 * 6 5 4 24 24 N 1.31694 * 120.56847 * 0.02562 * 23 6 5 25 25 C 1.31933 * 121.87963 * 359.97438 * 24 23 6 26 26 H 0.96703 * 114.00201 * 59.99759 * 1 2 3 27 27 H 1.08995 * 109.47315 * 120.00728 * 2 1 3 28 28 H 1.48500 * 110.00369 * 298.68440 * 3 2 1 29 29 H 1.48504 * 109.99870 * 60.00282 * 3 2 1 30 30 H 1.07994 * 120.85854 * 359.97438 * 5 4 2 31 31 H 0.97000 * 119.99327 * 359.97438 * 9 7 6 32 32 H 1.09002 * 113.61285 * 203.66432 * 12 10 9 33 33 H 1.09006 * 113.61201 * 334.56129 * 12 10 9 34 34 H 1.08002 * 120.01670 * 179.97438 * 18 16 15 35 35 H 1.07993 * 119.98460 * 179.97438 * 19 18 16 36 36 H 1.08008 * 119.97208 * 179.97438 * 20 19 18 37 37 H 1.08000 * 119.98690 * 359.97438 * 21 15 13 38 38 H 1.09001 * 113.61720 * 220.01297 * 22 13 12 39 39 H 1.09008 * 113.60847 * 89.11744 * 22 13 12 40 40 H 1.07998 * 119.72093 * 180.02562 * 23 6 5 41 41 H 1.08000 * 119.46299 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 1.6014 -2.0349 -1.4567 6 6 2.0910 -2.6524 -2.6141 7 6 1.7692 -4.0655 -2.9058 8 8 1.0744 -4.7016 -2.1375 9 7 2.2460 -4.6485 -4.0234 10 6 1.9266 -6.0487 -4.3126 11 1 1.0121 -6.3840 -3.8234 12 6 1.9886 -6.3983 -5.8089 13 6 3.4748 -6.7270 -5.5901 14 1 4.1357 -5.8705 -5.7242 15 6 3.9393 -7.9493 -6.3391 16 6 4.9554 -7.8443 -7.2736 17 9 5.5313 -6.6462 -7.5143 18 6 5.3808 -8.9684 -7.9615 19 6 4.7913 -10.1934 -7.7141 20 6 3.7767 -10.2970 -6.7806 21 6 3.3550 -9.1768 -6.0894 22 6 3.1162 -7.0041 -4.1207 23 6 2.8878 -1.9115 -3.4876 24 7 3.1750 -0.6528 -3.2278 25 6 2.7279 -0.0451 -2.1455 26 1 -0.3934 0.4417 -0.7650 27 1 1.7924 -0.5139 0.8899 28 1 1.5879 2.4586 -1.2242 29 1 1.5615 2.4678 1.2086 30 1 0.9822 -2.5785 -0.7586 31 1 2.8001 -4.1407 -4.6367 32 1 1.3851 -7.2646 -6.0802 33 1 1.8223 -5.5433 -6.4643 34 1 6.1731 -8.8876 -8.6911 35 1 5.1227 -11.0700 -8.2508 36 1 3.3163 -11.2549 -6.5882 37 1 2.5657 -9.2598 -5.3569 38 1 3.8603 -6.6384 -3.4131 39 1 2.8211 -8.0361 -3.9305 40 1 3.2723 -2.3742 -4.3845 41 1 2.9880 0.9884 -1.9708 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705094_13287814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:03 Heat of formation + Delta-G solvation = -13.603803 kcal Electronic energy + Delta-G solvation = -26572.610568 eV Core-core repulsion = 22527.581403 eV Total energy + Delta-G solvation = -4045.029165 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.90732 -42.06856 -41.23251 -40.06832 -38.75691 -38.09114 -34.95724 -33.80339 -33.09864 -31.67747 -31.39384 -27.33000 -26.83020 -26.75940 -25.44543 -23.92799 -23.70667 -22.69674 -21.87380 -20.27871 -19.38475 -18.71109 -18.17047 -17.94781 -17.74868 -17.41801 -17.01597 -16.65592 -16.63203 -16.51958 -16.12088 -15.98446 -15.43068 -15.27153 -15.05559 -14.70588 -14.60603 -14.39559 -14.24849 -14.13480 -13.90695 -13.49968 -13.46904 -13.05158 -13.02972 -12.82122 -12.37665 -12.12942 -11.94341 -11.78595 -11.48878 -11.27401 -11.13484 -10.73469 -10.59955 -10.41081 -10.16876 -9.87488 -9.57269 -4.95223 -0.60676 -0.05675 0.18604 0.25063 1.21318 1.57544 1.60241 1.85449 1.96257 2.58928 2.61209 3.07054 3.26742 3.30513 3.37206 3.40532 3.57541 3.61615 3.62752 3.69849 3.72510 3.82569 3.91940 4.08081 4.09735 4.16259 4.25530 4.36391 4.38940 4.52441 4.58415 4.72605 4.76829 4.81460 4.85070 4.90920 4.95589 4.98805 5.06270 5.11791 5.24797 5.29514 5.37397 5.49035 5.53893 5.95812 6.29952 6.39646 6.62574 6.97960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.082 4.082 3 Si 0.774 3.226 4 C -0.173 4.173 5 C -0.001 4.001 6 C -0.197 4.197 7 C 0.568 3.432 8 O -0.570 6.570 9 N -0.694 5.694 10 C 0.116 3.884 11 H 0.096 0.904 12 C -0.122 4.122 13 C -0.074 4.074 14 H 0.099 0.901 15 C -0.111 4.111 16 C 0.073 3.927 17 F -0.150 7.150 18 C -0.164 4.164 19 C -0.100 4.100 20 C -0.129 4.129 21 C -0.095 4.095 22 C -0.137 4.137 23 C 0.146 3.854 24 N -0.494 5.494 25 C 0.130 3.870 26 H 0.388 0.612 27 H 0.130 0.870 28 H -0.273 1.273 29 H -0.298 1.298 30 H 0.138 0.862 31 H 0.414 0.586 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.141 0.859 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.188 0.812 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 -1.301 -2.860 4.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.191 4.191 3 Si 0.678 3.322 4 C -0.175 4.175 5 C -0.027 4.027 6 C -0.202 4.202 7 C 0.356 3.644 8 O -0.450 6.450 9 N -0.345 5.345 10 C 0.011 3.989 11 H 0.114 0.886 12 C -0.160 4.160 13 C -0.092 4.092 14 H 0.118 0.882 15 C -0.112 4.112 16 C 0.054 3.946 17 F -0.129 7.129 18 C -0.183 4.183 19 C -0.118 4.118 20 C -0.146 4.146 21 C -0.112 4.112 22 C -0.176 4.176 23 C -0.012 4.012 24 N -0.201 5.201 25 C -0.026 4.026 26 H 0.237 0.763 27 H 0.148 0.852 28 H -0.199 1.199 29 H -0.226 1.226 30 H 0.156 0.844 31 H 0.252 0.748 32 H 0.128 0.872 33 H 0.104 0.896 34 H 0.159 0.841 35 H 0.169 0.831 36 H 0.169 0.831 37 H 0.169 0.831 38 H 0.086 0.914 39 H 0.125 0.875 40 H 0.205 0.795 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 2.567 -0.736 -2.398 3.589 hybrid contribution -1.177 -0.258 -0.205 1.222 sum 1.390 -0.994 -2.604 3.115 Atomic orbital electron populations 1.86614 1.18244 1.80419 1.50220 1.25286 0.83633 1.12473 0.97671 0.94080 0.89898 0.70963 0.77298 1.21377 1.01431 0.95070 0.99653 1.21647 0.92982 0.93641 0.94434 1.20972 1.04949 0.95085 0.99187 1.18180 0.78897 0.86152 0.81184 1.90798 1.39674 1.65625 1.48929 1.45487 1.52755 1.12765 1.23527 1.21901 0.99004 0.80516 0.97496 0.88615 1.23399 0.94748 1.03344 0.94513 1.21526 0.97293 0.95285 0.95089 0.88233 1.19883 0.96601 0.97043 0.97638 1.17899 0.96090 0.81035 0.99593 1.91452 1.83649 1.44222 1.93591 1.21415 1.02744 0.92347 1.01777 1.21362 0.95599 0.97173 0.97633 1.21585 0.97174 0.99870 0.96018 1.21201 0.99727 0.90801 0.99503 1.23565 0.97780 1.00969 0.95256 1.23415 0.90783 0.89331 0.97701 1.67817 1.22129 1.10583 1.19612 1.23243 0.90749 1.00578 0.88012 0.76289 0.85202 1.19922 1.22565 0.84386 0.74777 0.87188 0.89590 0.84131 0.83101 0.83143 0.83142 0.91353 0.87466 0.79503 0.79932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.93 12.78 -148.98 -1.90 -2.83 16 2 C -0.08 0.18 2.83 71.24 0.20 0.38 16 3 Si 0.77 -3.54 29.82 68.60 2.05 -1.50 16 4 C -0.17 0.14 5.39 -19.81 -0.11 0.03 16 5 C 0.00 0.00 9.31 22.73 0.21 0.21 16 6 C -0.20 -0.34 5.89 -19.99 -0.12 -0.46 16 7 C 0.57 2.42 7.78 86.78 0.68 3.09 16 8 O -0.57 -7.18 16.02 -3.88 -0.06 -7.24 16 9 N -0.69 1.45 5.22 -442.92 -2.31 -0.86 16 10 C 0.12 -0.25 4.32 45.52 0.20 -0.05 16 11 H 0.10 0.13 7.46 -2.39 -0.02 0.11 16 12 C -0.12 0.63 7.29 31.12 0.23 0.86 16 13 C -0.07 0.23 3.78 -11.02 -0.04 0.19 16 14 H 0.10 -0.27 7.45 -2.38 -0.02 -0.29 16 15 C -0.11 0.05 5.29 -19.82 -0.10 -0.06 16 16 C 0.07 0.20 7.25 22.38 0.16 0.36 16 17 F -0.15 -0.79 16.37 44.97 0.74 -0.06 16 18 C -0.16 -0.09 10.03 22.31 0.22 0.14 16 19 C -0.10 0.26 10.04 22.26 0.22 0.48 16 20 C -0.13 0.48 10.04 22.27 0.22 0.70 16 21 C -0.09 0.30 8.62 22.26 0.19 0.49 16 22 C -0.14 0.40 7.25 31.12 0.23 0.63 16 23 C 0.15 -0.24 10.71 85.02 0.91 0.67 16 24 N -0.49 -0.28 10.35 -194.75 -2.01 -2.30 16 25 C 0.13 -0.23 9.84 84.70 0.83 0.60 16 26 H 0.39 -1.62 8.70 -74.06 -0.64 -2.26 16 27 H 0.13 -0.45 7.96 -2.39 -0.02 -0.47 16 28 H -0.27 0.41 7.11 99.48 0.71 1.12 16 29 H -0.30 -1.04 7.11 99.48 0.71 -0.33 16 30 H 0.14 0.76 7.74 -2.91 -0.02 0.74 16 31 H 0.41 -3.12 6.77 -92.71 -0.63 -3.75 16 32 H 0.11 -0.71 7.73 -2.39 -0.02 -0.73 16 33 H 0.09 -0.52 8.14 -2.38 -0.02 -0.54 16 34 H 0.14 -0.24 8.06 -2.91 -0.02 -0.26 16 35 H 0.15 -1.04 8.06 -2.91 -0.02 -1.07 16 36 H 0.15 -1.22 8.06 -2.91 -0.02 -1.24 16 37 H 0.15 -1.09 6.64 -2.91 -0.02 -1.11 16 38 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.11 -0.51 6.30 -2.38 -0.02 -0.53 16 40 H 0.19 -1.58 6.42 -2.91 -0.02 -1.60 16 41 H 0.18 -1.24 4.88 -2.91 -0.01 -1.26 16 Total: 0.00 -20.58 348.96 0.50 -20.08 By element: Atomic # 1 Polarization: -13.42 SS G_CDS: -0.13 Total: -13.55 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 4.14 Total: 8.25 kcal Atomic # 7 Polarization: 1.17 SS G_CDS: -4.33 Total: -3.16 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -1.97 Total: -10.07 kcal Atomic # 9 Polarization: -0.79 SS G_CDS: 0.74 Total: -0.06 kcal Atomic # 14 Polarization: -3.54 SS G_CDS: 2.05 Total: -1.50 kcal Total: -20.58 0.50 -20.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705094_13287814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.480 kcal (2) G-P(sol) polarization free energy of solvation -20.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds