Wall clock time and date at job start Tue Mar 9 2021 13:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86293 * 109.47186 * 2 1 4 4 C 1.50699 * 109.46767 * 240.00105 * 2 1 3 5 5 C 1.33747 * 125.12328 * 299.99957 * 4 2 1 6 6 C 1.37795 * 115.08127 * 180.02562 * 5 4 2 7 7 C 1.34975 * 114.70738 * 0.02562 * 6 5 4 8 8 C 1.47560 * 125.28013 * 180.26508 * 7 6 5 9 9 C 1.39817 * 119.99445 * 359.43786 * 8 7 6 10 10 C 1.36565 * 120.00088 * 179.76171 * 9 8 7 11 11 C 1.39837 * 119.99165 * 0.54349 * 10 9 8 12 12 C 1.47561 * 119.99955 * 179.69452 * 11 10 9 13 13 O 1.21597 * 120.00288 * 180.02562 * 12 11 10 14 14 N 1.34777 * 119.99974 * 0.02562 * 12 11 10 15 15 C 1.46502 * 120.00450 * 180.02562 * 14 12 11 16 16 H 1.09005 * 112.84526 * 23.79354 * 15 14 12 17 17 C 1.53774 * 113.61675 * 154.99843 * 15 14 12 18 18 C 1.53777 * 87.08267 * 89.11796 * 17 15 14 19 19 H 1.09004 * 113.61277 * 270.88311 * 18 17 15 20 20 C 1.50693 * 113.62156 * 139.98087 * 18 17 15 21 21 C 1.38443 * 120.01815 * 119.99343 * 20 18 17 22 22 F 1.35101 * 120.02167 * 0.02906 * 21 20 18 23 23 C 1.38477 * 119.94826 * 180.02562 * 21 20 18 24 24 C 1.38171 * 119.97845 * 0.02562 * 23 21 20 25 25 C 1.38268 * 120.02527 * 0.02562 * 24 23 21 26 26 C 1.38224 * 120.05313 * 359.72433 * 25 24 23 27 27 C 1.53778 * 87.08224 * 25.43131 * 18 17 15 28 28 C 1.39833 * 120.00212 * 359.71209 * 11 10 9 29 29 C 1.36560 * 119.99346 * 0.02562 * 28 11 10 30 30 S 1.75859 * 125.11784 * 120.02428 * 4 2 1 31 31 H 0.96703 * 114.00287 * 299.99876 * 1 2 3 32 32 H 1.09001 * 109.46982 * 120.00676 * 2 1 3 33 33 H 1.48506 * 110.00058 * 178.68432 * 3 2 1 34 34 H 1.48501 * 110.00210 * 300.00105 * 3 2 1 35 35 H 1.07999 * 122.45175 * 0.02562 * 5 4 2 36 36 H 1.08001 * 122.64423 * 180.02562 * 6 5 4 37 37 H 1.08003 * 120.00591 * 0.02562 * 9 8 7 38 38 H 1.07994 * 120.00678 * 180.25595 * 10 9 8 39 39 H 0.97004 * 120.00232 * 359.97438 * 14 12 11 40 40 H 1.09004 * 113.61138 * 203.66131 * 17 15 14 41 41 H 1.08999 * 113.61535 * 334.56413 * 17 15 14 42 42 H 1.08007 * 120.01143 * 179.97438 * 23 21 20 43 43 H 1.08002 * 119.98941 * 179.97438 * 24 23 21 44 44 H 1.08005 * 119.97812 * 179.97438 * 25 24 23 45 45 H 1.07996 * 119.99025 * 180.27627 * 26 25 24 46 46 H 1.09002 * 113.61511 * 220.02167 * 27 18 17 47 47 H 1.08998 * 113.61711 * 89.11948 * 27 18 17 48 48 H 1.07994 * 120.00264 * 180.02562 * 28 11 10 49 49 H 1.08004 * 119.99506 * 179.97438 * 29 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9312 -0.7104 -1.2305 5 6 1.6720 -1.9847 -1.5430 6 6 2.2379 -2.4243 -2.7200 7 6 2.9681 -1.4975 -3.3755 8 6 3.6694 -1.7143 -4.6556 9 6 3.6159 -2.9646 -5.2789 10 6 4.2609 -3.1640 -6.4660 11 6 4.9841 -2.1207 -7.0524 12 6 5.6866 -2.3378 -8.3318 13 8 6.3160 -1.4308 -8.8415 14 7 5.6308 -3.5416 -8.9354 15 6 6.3287 -3.7574 -10.2053 16 1 7.1585 -3.0667 -10.3549 17 6 6.6967 -5.2279 -10.4637 18 6 5.3204 -5.3727 -11.1343 19 1 4.5255 -5.6538 -10.4435 20 6 5.3418 -6.2205 -12.3799 21 6 4.5728 -7.3696 -12.4489 22 9 3.8022 -7.7312 -11.3998 23 6 4.5940 -8.1479 -13.5941 24 6 5.3828 -7.7773 -14.6662 25 6 6.1513 -6.6301 -14.5958 26 6 6.1271 -5.8495 -13.4553 27 6 5.3863 -3.8624 -11.4160 28 6 5.0420 -0.8717 -6.4262 29 6 4.3926 -0.6711 -5.2418 30 16 2.9470 0.0113 -2.4715 31 1 -0.3934 0.4417 0.7651 32 1 1.7923 -0.5139 0.8899 33 1 3.5346 1.7702 0.0320 34 1 1.5614 2.4679 -1.2085 35 1 1.0637 -2.6223 -0.9186 36 1 2.1074 -3.4309 -3.0888 37 1 3.0611 -3.7718 -4.8237 38 1 4.2162 -4.1285 -6.9496 39 1 5.1290 -4.2653 -8.5286 40 1 7.5329 -5.3543 -11.1515 41 1 6.8031 -5.8179 -9.5534 42 1 3.9947 -9.0448 -13.6488 43 1 5.3998 -8.3845 -15.5593 44 1 6.7680 -6.3414 -15.4342 45 1 6.7244 -4.9513 -13.4032 46 1 4.4347 -3.3499 -11.2744 47 1 5.8642 -3.6154 -12.3640 48 1 5.6002 -0.0658 -6.8793 49 1 4.4376 0.2934 -4.7580 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705094_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:10 Heat of formation + Delta-G solvation = 11.789517 kcal Electronic energy + Delta-G solvation = -33549.679871 eV Core-core repulsion = 28836.350200 eV Total energy + Delta-G solvation = -4713.329671 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.114 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.92283 -41.81939 -40.84290 -39.90408 -39.09414 -38.63163 -37.42074 -34.94753 -33.57889 -32.43166 -31.76151 -31.42327 -30.55650 -27.50040 -26.77787 -26.26430 -24.78574 -24.10839 -23.77618 -23.39525 -22.67188 -21.90947 -20.28561 -20.20602 -19.22386 -18.70717 -18.57262 -18.32200 -17.48571 -17.27364 -17.13278 -16.82054 -16.64990 -16.29675 -16.17147 -16.10066 -15.70995 -15.58749 -15.23867 -15.09779 -15.06420 -14.92265 -14.70304 -14.40514 -14.36033 -14.18451 -14.14949 -13.94373 -13.54304 -13.44953 -13.27827 -13.18474 -13.04537 -13.03564 -12.70023 -12.41781 -12.37425 -12.18408 -11.94812 -11.86196 -11.79627 -11.28377 -11.21663 -10.89822 -10.37643 -10.29338 -10.21491 -9.88827 -9.74001 -9.58599 -9.13259 -5.27380 -1.00209 0.13203 0.17434 0.23533 0.23834 0.30223 0.65810 1.15683 1.43946 1.53921 1.85728 1.87224 1.93369 2.59567 2.72474 3.25328 3.28693 3.38357 3.39155 3.56145 3.57298 3.61581 3.65937 3.73569 3.81143 3.81456 3.90574 4.07702 4.09522 4.15380 4.21111 4.32150 4.34774 4.37713 4.42032 4.45842 4.51894 4.58013 4.70741 4.77374 4.81787 4.84427 4.90741 4.93727 4.97081 5.00144 5.05254 5.10304 5.12238 5.17643 5.21854 5.23897 5.36884 5.38352 5.47848 5.53104 5.63085 5.94525 6.35705 6.83179 7.03167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.036 4.036 3 Si 0.748 3.252 4 C -0.186 4.186 5 C -0.104 4.104 6 C -0.113 4.113 7 C -0.153 4.153 8 C 0.005 3.995 9 C -0.106 4.106 10 C -0.066 4.066 11 C -0.149 4.149 12 C 0.562 3.438 13 O -0.576 6.576 14 N -0.695 5.695 15 C 0.115 3.885 16 H 0.094 0.906 17 C -0.121 4.121 18 C -0.073 4.073 19 H 0.099 0.901 20 C -0.111 4.111 21 C 0.073 3.927 22 F -0.150 7.150 23 C -0.164 4.164 24 C -0.099 4.099 25 C -0.128 4.128 26 C -0.095 4.095 27 C -0.138 4.138 28 C -0.062 4.062 29 C -0.132 4.132 30 S 0.059 5.941 31 H 0.407 0.593 32 H 0.112 0.888 33 H -0.273 1.273 34 H -0.286 1.286 35 H 0.166 0.834 36 H 0.176 0.824 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.414 0.586 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.141 0.859 43 H 0.152 0.848 44 H 0.151 0.849 45 H 0.150 0.850 46 H 0.066 0.934 47 H 0.107 0.893 48 H 0.131 0.869 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.344 -4.214 3.056 5.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.149 4.149 3 Si 0.653 3.347 4 C -0.303 4.303 5 C -0.133 4.133 6 C -0.143 4.143 7 C -0.270 4.270 8 C 0.003 3.997 9 C -0.125 4.125 10 C -0.085 4.085 11 C -0.152 4.152 12 C 0.350 3.650 13 O -0.457 6.457 14 N -0.347 5.347 15 C 0.009 3.991 16 H 0.112 0.888 17 C -0.159 4.159 18 C -0.091 4.091 19 H 0.117 0.883 20 C -0.112 4.112 21 C 0.054 3.946 22 F -0.129 7.129 23 C -0.182 4.182 24 C -0.117 4.117 25 C -0.146 4.146 26 C -0.113 4.113 27 C -0.177 4.177 28 C -0.081 4.081 29 C -0.151 4.151 30 S 0.325 5.675 31 H 0.259 0.741 32 H 0.129 0.871 33 H -0.199 1.199 34 H -0.213 1.213 35 H 0.183 0.817 36 H 0.193 0.807 37 H 0.181 0.819 38 H 0.181 0.819 39 H 0.252 0.748 40 H 0.128 0.872 41 H 0.104 0.896 42 H 0.159 0.841 43 H 0.170 0.830 44 H 0.169 0.831 45 H 0.168 0.832 46 H 0.084 0.916 47 H 0.125 0.875 48 H 0.149 0.851 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.268 -1.854 1.592 2.459 hybrid contribution -1.006 -1.804 0.321 2.091 sum -0.739 -3.658 1.913 4.194 Atomic orbital electron populations 1.86453 1.16553 1.82340 1.51644 1.24028 0.86149 1.09501 0.95199 0.94123 0.78745 0.76323 0.85517 1.24108 1.06602 0.98292 1.01279 1.20289 1.00617 0.94735 0.97701 1.20737 0.97279 1.01439 0.94871 1.23176 1.06991 0.97193 0.99602 1.18470 0.95197 0.94815 0.91242 1.21201 0.99913 0.96148 0.95260 1.21278 0.93739 0.98693 0.94744 1.20019 1.03041 0.96068 0.96069 1.18399 0.79682 0.82488 0.84382 1.90783 1.44340 1.43627 1.66949 1.45493 1.53000 1.12934 1.23248 1.21897 0.95637 0.98457 0.83064 0.88804 1.23389 0.96771 0.93938 1.01802 1.21510 0.99361 0.94050 0.94180 0.88282 1.19875 0.98490 0.94931 0.97854 1.17891 0.94637 0.96557 0.85522 1.91449 1.73557 1.91622 1.56292 1.21413 1.02484 1.01285 0.93046 1.21364 0.94867 0.97128 0.98364 1.21587 0.99445 0.94741 0.98844 1.21202 0.97778 1.00367 0.91932 1.23568 1.00492 0.94478 0.99125 1.20923 0.96508 0.96698 0.93925 1.20984 0.98690 0.99101 0.96296 1.84447 1.50814 1.15425 1.16827 0.74123 0.87062 1.19904 1.21267 0.81691 0.80693 0.81873 0.81874 0.74764 0.87179 0.89572 0.84071 0.83041 0.83124 0.83218 0.91568 0.87492 0.85150 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.82 12.83 -148.98 -1.91 -1.10 16 2 C -0.04 0.04 2.95 71.24 0.21 0.25 16 3 Si 0.75 -0.76 30.96 68.60 2.12 1.36 16 4 C -0.19 -0.80 5.76 24.66 0.14 -0.66 16 5 C -0.10 -0.21 10.00 21.14 0.21 0.00 16 6 C -0.11 -0.13 9.64 21.41 0.21 0.08 16 7 C -0.15 -0.71 6.37 23.98 0.15 -0.56 16 8 C 0.00 0.02 5.88 -20.05 -0.12 -0.10 16 9 C -0.11 0.13 9.48 22.26 0.21 0.35 16 10 C -0.07 0.13 9.48 22.27 0.21 0.34 16 11 C -0.15 -0.63 5.88 -20.04 -0.12 -0.75 16 12 C 0.56 3.77 7.76 86.70 0.67 4.45 16 13 O -0.58 -8.70 15.93 -4.02 -0.06 -8.77 16 14 N -0.70 0.10 5.21 -443.16 -2.31 -2.21 16 15 C 0.11 -0.05 4.32 45.52 0.20 0.14 16 16 H 0.09 0.30 7.46 -2.38 -0.02 0.28 16 17 C -0.12 0.49 7.29 31.12 0.23 0.72 16 18 C -0.07 0.15 3.78 -11.02 -0.04 0.11 16 19 H 0.10 -0.17 7.45 -2.39 -0.02 -0.19 16 20 C -0.11 -0.03 5.29 -19.82 -0.10 -0.13 16 21 C 0.07 0.24 7.25 22.38 0.16 0.40 16 22 F -0.15 -0.84 16.37 44.97 0.74 -0.11 16 23 C -0.16 -0.14 10.03 22.31 0.22 0.08 16 24 C -0.10 0.22 10.04 22.26 0.22 0.44 16 25 C -0.13 0.41 10.04 22.27 0.22 0.64 16 26 C -0.10 0.23 8.62 22.26 0.19 0.42 16 27 C -0.14 0.20 7.25 31.12 0.23 0.42 16 28 C -0.06 -0.41 9.53 22.26 0.21 -0.20 16 29 C -0.13 -0.77 9.54 22.26 0.21 -0.56 16 30 S 0.06 0.41 19.46 -56.49 -1.10 -0.69 16 31 H 0.41 -4.96 8.74 -74.06 -0.65 -5.61 16 32 H 0.11 -0.70 7.96 -2.39 -0.02 -0.72 16 33 H -0.27 -1.20 7.11 99.48 0.71 -0.50 16 34 H -0.29 -2.06 7.11 99.48 0.71 -1.35 16 35 H 0.17 -0.30 8.06 -2.91 -0.02 -0.32 16 36 H 0.18 -0.92 6.88 -2.91 -0.02 -0.94 16 37 H 0.16 -1.19 6.74 -2.91 -0.02 -1.21 16 38 H 0.16 -1.50 6.38 -2.91 -0.02 -1.52 16 39 H 0.41 -2.44 6.71 -92.71 -0.62 -3.06 16 40 H 0.11 -0.61 7.73 -2.38 -0.02 -0.63 16 41 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 42 H 0.14 -0.21 8.06 -2.91 -0.02 -0.23 16 43 H 0.15 -1.01 8.06 -2.91 -0.02 -1.03 16 44 H 0.15 -1.15 8.06 -2.91 -0.02 -1.18 16 45 H 0.15 -0.95 6.65 -2.91 -0.02 -0.97 16 46 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 47 H 0.11 -0.36 6.30 -2.39 -0.02 -0.38 16 48 H 0.13 1.05 7.64 -2.91 -0.02 1.02 16 49 H 0.13 0.68 7.26 -2.91 -0.02 0.66 16 Total: 0.00 -24.93 423.59 1.01 -23.92 By element: Atomic # 1 Polarization: -18.09 SS G_CDS: -0.20 Total: -18.29 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 3.74 Total: 5.88 kcal Atomic # 7 Polarization: 0.10 SS G_CDS: -2.31 Total: -2.21 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -1.98 Total: -9.86 kcal Atomic # 9 Polarization: -0.84 SS G_CDS: 0.74 Total: -0.11 kcal Atomic # 14 Polarization: -0.76 SS G_CDS: 2.12 Total: 1.36 kcal Atomic # 16 Polarization: 0.41 SS G_CDS: -1.10 Total: -0.69 kcal Total: -24.93 1.01 -23.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705094_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.708 kcal (2) G-P(sol) polarization free energy of solvation -24.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds