Wall clock time and date at job start Tue Mar 9 2021 13:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35984 * 116.99859 * 2 1 4 4 C 1.39156 * 120.07613 * 179.97438 * 3 2 1 5 5 O 1.35995 * 120.06977 * 359.97438 * 4 3 2 6 6 C 1.42904 * 117.00024 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46869 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00323 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99817 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99940 * 180.02562 * 9 7 6 11 11 H 1.09004 * 112.91032 * 23.75105 * 10 9 7 12 12 C 1.53784 * 113.61434 * 155.00095 * 10 9 7 13 13 C 1.53787 * 87.07923 * 89.11404 * 12 10 9 14 14 H 1.08998 * 113.61447 * 270.79825 * 13 12 10 15 15 C 1.50702 * 113.60869 * 139.98154 * 13 12 10 16 16 C 1.38439 * 120.00990 * 120.00342 * 15 13 12 17 17 F 1.35099 * 120.02721 * 359.97438 * 16 15 13 18 18 C 1.38479 * 119.94889 * 180.02562 * 16 15 13 19 19 C 1.38176 * 119.97450 * 359.97438 * 18 16 15 20 20 C 1.38273 * 120.02339 * 0.02562 * 19 18 16 21 21 C 1.38212 * 120.01453 * 299.72353 * 15 13 12 22 22 C 1.53779 * 113.61357 * 252.49697 * 10 9 7 23 23 C 1.38566 * 119.85904 * 180.24791 * 4 3 2 24 24 C 1.38237 * 119.99561 * 359.48133 * 23 4 3 25 25 C 1.38253 * 120.14679 * 0.49795 * 24 23 4 26 26 C 1.50702 * 119.92623 * 179.74751 * 25 24 23 27 27 O 1.42900 * 109.47412 * 245.02406 * 26 25 24 28 28 Si 1.86299 * 109.47380 * 5.02608 * 26 25 24 29 29 C 1.38238 * 120.15010 * 359.77805 * 25 24 23 30 30 H 1.09000 * 109.46633 * 60.00594 * 1 2 3 31 31 H 1.09003 * 109.46966 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47165 * 300.00283 * 1 2 3 33 33 H 1.08994 * 109.46996 * 59.99922 * 6 5 4 34 34 H 1.08990 * 109.47179 * 299.99732 * 6 5 4 35 35 H 0.97000 * 119.99785 * 0.02562 * 9 7 6 36 36 H 1.09004 * 113.61451 * 334.56890 * 12 10 9 37 37 H 1.08994 * 113.61477 * 203.66192 * 12 10 9 38 38 H 1.08002 * 120.01510 * 179.97438 * 18 16 15 39 39 H 1.07997 * 119.99131 * 179.97438 * 19 18 16 40 40 H 1.08006 * 119.96879 * 180.02562 * 20 19 18 41 41 H 1.08001 * 119.99006 * 0.02562 * 21 15 13 42 42 H 1.09006 * 113.61307 * 156.33848 * 22 10 9 43 43 H 1.08999 * 113.69146 * 25.44334 * 22 10 9 44 44 H 1.07997 * 119.99817 * 179.72418 * 23 4 3 45 45 H 1.07997 * 119.93044 * 180.25226 * 24 23 4 46 46 H 1.08997 * 109.47180 * 125.02914 * 26 25 24 47 47 H 0.96703 * 113.99728 * 59.99876 * 27 26 25 48 48 H 1.48505 * 110.00131 * 58.67679 * 28 26 25 49 49 H 1.48494 * 110.00543 * 179.97438 * 28 26 25 50 50 H 1.07994 * 120.00348 * 179.97438 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4359 1.2864 0.0005 5 8 4.1796 0.1477 0.0016 6 6 5.6004 0.3007 0.0015 7 6 6.2519 -1.0582 0.0034 8 8 5.5671 -2.0591 0.0042 9 7 7.5958 -1.1612 0.0032 10 6 8.2291 -2.4822 0.0044 11 1 7.5838 -3.2626 -0.3990 12 6 9.6469 -2.4861 -0.5914 13 6 10.1586 -2.1805 0.8262 14 1 10.2161 -1.1151 1.0494 15 6 11.4199 -2.9228 1.1857 16 6 12.5659 -2.2205 1.5173 17 9 12.5545 -0.8696 1.5184 18 6 13.7244 -2.9039 1.8469 19 6 13.7351 -4.2856 1.8450 20 6 12.5898 -4.9859 1.5136 21 6 11.4313 -4.3048 1.1901 22 6 8.8780 -2.8529 1.3484 23 6 4.0603 2.5234 0.0057 24 6 3.3030 3.6798 -0.0005 25 6 1.9224 3.6056 -0.0015 26 6 1.1016 4.8695 -0.0025 27 8 0.3642 4.9596 1.2182 28 14 2.2309 6.3433 -0.1560 29 6 1.2932 2.3748 -0.0009 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 5.9065 0.8513 0.8910 34 1 5.9066 0.8496 -0.8889 35 1 8.1435 -0.3606 0.0021 36 1 9.8238 -1.6794 -1.3029 37 1 9.9595 -3.4600 -0.9679 38 1 14.6192 -2.3571 2.1054 39 1 14.6385 -4.8188 2.1016 40 1 12.5990 -6.0659 1.5128 41 1 10.5362 -4.8529 0.9354 42 1 8.9804 -3.9272 1.5022 43 1 8.4350 -2.3432 2.2040 44 1 5.1386 2.5840 0.0107 45 1 3.7907 4.6433 -0.0005 46 1 0.4097 4.8527 -0.8445 47 1 0.9172 4.9792 2.0113 48 1 3.0266 6.2455 -1.4060 49 1 1.4336 7.5961 -0.1588 50 1 0.2147 2.3196 -0.0013 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705094_60476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:42:38 Heat of formation + Delta-G solvation = -92.315994 kcal Electronic energy + Delta-G solvation = -34466.833337 eV Core-core repulsion = 29535.377244 eV Total energy + Delta-G solvation = -4931.456093 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.156 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.90096 -41.88504 -41.47402 -40.39446 -39.41489 -38.93100 -38.56897 -36.91734 -34.74864 -32.20616 -31.81535 -31.45624 -31.39442 -29.50061 -28.46042 -26.74855 -26.37987 -26.01224 -23.96054 -23.53723 -22.75913 -22.51226 -21.83949 -20.23490 -19.79881 -18.82397 -18.51862 -18.34051 -17.91515 -17.55522 -17.42529 -17.24735 -16.91431 -16.73999 -16.67180 -16.60928 -16.10182 -15.91311 -15.67353 -15.61104 -15.47279 -15.19390 -15.01880 -14.88634 -14.56502 -14.29424 -14.14342 -13.93125 -13.78016 -13.61753 -13.52886 -13.43493 -13.03334 -13.02019 -12.63725 -12.54549 -12.37352 -12.18446 -12.12659 -11.98297 -11.91362 -11.76607 -11.75974 -11.26390 -11.03270 -10.43604 -10.19744 -9.87153 -9.80221 -9.56708 -8.92362 -4.97277 0.15729 0.19008 0.25400 0.27129 1.33318 1.41738 1.44915 1.67443 1.99994 2.29960 2.54554 2.55395 2.61210 3.27515 3.41649 3.48317 3.50324 3.59481 3.65392 3.69673 3.83382 3.85817 3.89909 3.92614 4.04014 4.10405 4.11286 4.13466 4.17733 4.27501 4.29341 4.35257 4.36836 4.39388 4.49296 4.60237 4.63497 4.64977 4.73374 4.80758 4.87351 4.96348 4.99505 4.99701 5.08091 5.11615 5.12445 5.25501 5.36417 5.38692 5.49502 5.55393 5.59214 5.95591 5.96156 6.38288 6.52562 6.77583 7.10902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.335 6.335 3 C 0.077 3.923 4 C 0.084 3.916 5 O -0.314 6.314 6 C 0.034 3.966 7 C 0.516 3.484 8 O -0.570 6.570 9 N -0.694 5.694 10 C 0.117 3.883 11 H 0.088 0.912 12 C -0.121 4.121 13 C -0.071 4.071 14 H 0.103 0.897 15 C -0.111 4.111 16 C 0.074 3.926 17 F -0.149 7.149 18 C -0.164 4.164 19 C -0.100 4.100 20 C -0.129 4.129 21 C -0.096 4.096 22 C -0.139 4.139 23 C -0.159 4.159 24 C -0.108 4.108 25 C -0.119 4.119 26 C -0.076 4.076 27 O -0.557 6.557 28 Si 0.786 3.214 29 C -0.153 4.153 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.064 0.936 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.420 0.580 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.142 0.858 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.103 0.897 43 H 0.068 0.932 44 H 0.176 0.824 45 H 0.161 0.839 46 H 0.103 0.897 47 H 0.395 0.605 48 H -0.280 1.280 49 H -0.303 1.303 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.539 2.186 1.341 7.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.031 3.969 4 C 0.039 3.961 5 O -0.227 6.227 6 C -0.043 4.043 7 C 0.302 3.698 8 O -0.448 6.448 9 N -0.348 5.348 10 C 0.011 3.989 11 H 0.107 0.893 12 C -0.159 4.159 13 C -0.089 4.089 14 H 0.121 0.879 15 C -0.112 4.112 16 C 0.055 3.945 17 F -0.128 7.128 18 C -0.183 4.183 19 C -0.118 4.118 20 C -0.147 4.147 21 C -0.113 4.113 22 C -0.177 4.177 23 C -0.178 4.178 24 C -0.126 4.126 25 C -0.120 4.120 26 C -0.185 4.185 27 O -0.365 6.365 28 Si 0.692 3.308 29 C -0.172 4.172 30 H 0.081 0.919 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.258 0.742 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.159 0.841 39 H 0.169 0.831 40 H 0.168 0.832 41 H 0.167 0.833 42 H 0.121 0.879 43 H 0.087 0.913 44 H 0.194 0.806 45 H 0.178 0.822 46 H 0.121 0.879 47 H 0.246 0.754 48 H -0.207 1.207 49 H -0.231 1.231 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.775 1.812 0.461 6.070 hybrid contribution -0.480 0.189 -0.257 0.577 sum 5.294 2.001 0.204 5.664 Atomic orbital electron populations 1.23282 0.76827 1.05223 1.02054 1.86187 1.22981 1.26634 1.89093 1.18664 0.89920 0.85589 1.02686 1.18592 0.88179 0.86556 1.02771 1.86221 1.18159 1.29047 1.89307 1.22771 0.79387 0.95081 1.07099 1.20557 0.82855 0.90901 0.75465 1.90772 1.64011 1.40124 1.49856 1.45361 1.05137 1.09644 1.74624 1.21838 0.94053 0.85363 0.97612 0.89338 1.23382 0.92441 1.04470 0.95600 1.21523 0.90278 0.99719 0.97420 0.87885 1.19891 0.94200 0.94790 1.02310 1.17869 0.95879 0.76609 1.04110 1.91450 1.97168 1.29768 1.94432 1.21416 0.97630 0.96052 1.03153 1.21360 0.99817 0.92818 0.97778 1.21582 0.92528 1.01718 0.98885 1.21194 0.99506 0.92378 0.98263 1.23564 0.94589 1.02268 0.97315 1.21392 1.02298 0.89327 1.04752 1.21003 0.92230 0.98976 1.00370 1.20203 0.94536 0.94815 1.02469 1.25262 1.00999 1.02280 0.89982 1.86468 1.37511 1.96641 1.15916 0.93674 0.79208 0.72531 0.85430 1.21015 1.00477 0.90617 1.05066 0.91917 0.87035 0.91703 0.85309 0.85522 0.74179 0.89356 0.87539 0.84058 0.83109 0.83247 0.83343 0.87861 0.91285 0.80638 0.82205 0.87920 0.75449 1.20709 1.23112 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.17 16 2 O -0.33 -3.83 10.28 -79.51 -0.82 -4.65 16 3 C 0.08 0.64 6.70 22.57 0.15 0.79 16 4 C 0.08 0.48 6.70 22.57 0.15 0.63 16 5 O -0.31 -2.71 9.45 -67.08 -0.63 -3.35 16 6 C 0.03 -0.08 5.22 71.24 0.37 0.29 16 7 C 0.52 1.89 7.91 87.66 0.69 2.59 16 8 O -0.57 -9.02 16.10 16.01 0.26 -8.76 16 9 N -0.69 2.46 5.26 -440.03 -2.32 0.14 16 10 C 0.12 -0.22 4.32 45.52 0.20 -0.03 16 11 H 0.09 0.25 7.47 -2.39 -0.02 0.23 16 12 C -0.12 0.65 7.29 31.12 0.23 0.87 16 13 C -0.07 0.25 3.78 -11.01 -0.04 0.21 16 14 H 0.10 -0.40 7.45 -2.39 -0.02 -0.41 16 15 C -0.11 0.07 5.29 -19.82 -0.10 -0.03 16 16 C 0.07 0.17 7.25 22.38 0.16 0.33 16 17 F -0.15 -0.65 16.36 44.97 0.74 0.08 16 18 C -0.16 -0.03 10.03 22.31 0.22 0.20 16 19 C -0.10 0.27 10.04 22.26 0.22 0.49 16 20 C -0.13 0.46 10.04 22.27 0.22 0.68 16 21 C -0.10 0.28 8.62 22.26 0.19 0.47 16 22 C -0.14 0.37 7.25 31.12 0.23 0.60 16 23 C -0.16 0.40 9.04 22.35 0.20 0.60 16 24 C -0.11 0.36 8.66 22.27 0.19 0.55 16 25 C -0.12 -0.05 5.35 -19.86 -0.11 -0.15 16 26 C -0.08 0.07 2.80 71.24 0.20 0.27 16 27 O -0.56 -0.04 12.83 -148.98 -1.91 -1.95 16 28 Si 0.79 -3.03 29.80 68.60 2.04 -0.99 16 29 C -0.15 -0.65 8.67 22.35 0.19 -0.46 16 30 H 0.06 0.04 7.66 -2.39 -0.02 0.02 16 31 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.06 0.04 7.66 -2.39 -0.02 0.02 16 33 H 0.13 -1.22 7.65 -2.39 -0.02 -1.24 16 34 H 0.13 -1.16 7.68 -2.39 -0.02 -1.18 16 35 H 0.42 -4.47 8.70 -92.71 -0.81 -5.28 16 36 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 37 H 0.11 -0.65 7.73 -2.39 -0.02 -0.67 16 38 H 0.14 -0.31 8.06 -2.91 -0.02 -0.33 16 39 H 0.15 -1.06 8.06 -2.91 -0.02 -1.08 16 40 H 0.15 -1.16 8.06 -2.91 -0.02 -1.19 16 41 H 0.15 -0.98 6.64 -2.91 -0.02 -1.00 16 42 H 0.10 -0.40 6.30 -2.38 -0.02 -0.42 16 43 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 44 H 0.18 -1.89 6.30 -2.91 -0.02 -1.91 16 45 H 0.16 -1.51 4.89 -2.91 -0.01 -1.52 16 46 H 0.10 0.07 7.96 -2.39 -0.02 0.05 16 47 H 0.40 -3.19 8.70 -74.06 -0.64 -3.83 16 48 H -0.28 -0.05 7.11 99.48 0.71 0.66 16 49 H -0.30 -1.28 7.11 99.48 0.71 -0.57 16 50 H 0.14 0.41 6.30 -2.91 -0.02 0.39 16 Total: 0.00 -31.00 416.78 1.65 -29.35 By element: Atomic # 1 Polarization: -19.57 SS G_CDS: -0.40 Total: -19.97 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 4.69 Total: 10.09 kcal Atomic # 7 Polarization: 2.46 SS G_CDS: -2.32 Total: 0.14 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -3.11 Total: -18.71 kcal Atomic # 9 Polarization: -0.65 SS G_CDS: 0.74 Total: 0.08 kcal Atomic # 14 Polarization: -3.03 SS G_CDS: 2.04 Total: -0.99 kcal Total: -31.00 1.65 -29.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705094_60476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.965 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds