Wall clock time and date at job start Tue Mar 9 2021 13:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50693 * 109.47661 * 239.99225 * 2 1 3 5 5 C 1.34460 * 126.48077 * 104.68821 * 4 2 1 6 6 N 1.36558 * 109.98373 * 179.83582 * 5 4 2 7 7 C 1.37832 * 109.86110 * 0.44217 * 6 5 4 8 8 C 1.38650 * 133.38470 * 179.76085 * 7 6 5 9 9 C 1.39316 * 119.66819 * 179.97438 * 8 7 6 10 10 C 1.47579 * 119.83260 * 179.97438 * 9 8 7 11 11 O 1.21592 * 119.99815 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00041 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99901 * 180.02562 * 12 10 9 14 14 H 1.08996 * 112.85069 * 334.66707 * 13 12 10 15 15 C 1.53786 * 113.61222 * 105.86134 * 13 12 10 16 16 C 1.54051 * 86.98476 * 89.16320 * 15 13 12 17 17 H 1.08998 * 113.61329 * 270.88657 * 16 15 13 18 18 C 1.50698 * 113.69670 * 139.98677 * 16 15 13 19 19 C 1.38231 * 119.99980 * 322.19421 * 18 16 15 20 20 C 1.38241 * 119.99717 * 179.76382 * 19 18 16 21 21 C 1.38237 * 120.00079 * 0.48451 * 20 19 18 22 22 C 1.38239 * 119.99879 * 359.79393 * 21 20 19 23 23 C 1.38230 * 119.99895 * 359.95197 * 22 21 20 24 24 C 1.53779 * 113.61596 * 203.46972 * 13 12 10 25 25 C 1.40203 * 120.33651 * 0.02562 * 9 8 7 26 26 C 1.36225 * 120.37833 * 0.02562 * 25 9 8 27 27 C 1.39878 * 119.95834 * 359.96792 * 26 25 9 28 28 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 29 29 H 1.09000 * 109.46638 * 119.99419 * 2 1 3 30 30 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 31 31 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 32 32 H 1.08005 * 125.00501 * 359.97243 * 5 4 2 33 33 H 0.97004 * 125.07261 * 180.20871 * 6 5 4 34 34 H 1.08008 * 120.16449 * 0.02562 * 8 7 6 35 35 H 0.97002 * 119.99909 * 0.02562 * 12 10 9 36 36 H 1.09004 * 113.61299 * 203.66355 * 15 13 12 37 37 H 1.08996 * 113.61327 * 334.56602 * 15 13 12 38 38 H 1.07997 * 120.00485 * 359.97438 * 19 18 16 39 39 H 1.08000 * 119.99723 * 180.25109 * 20 19 18 40 40 H 1.07998 * 120.00010 * 179.76586 * 21 20 19 41 41 H 1.07993 * 119.99805 * 179.97438 * 22 21 20 42 42 H 1.08006 * 120.00103 * 180.02562 * 23 22 21 43 43 H 1.08997 * 113.61187 * 25.43070 * 24 13 12 44 44 H 1.08993 * 113.61408 * 156.33705 * 24 13 12 45 45 H 1.07999 * 119.80954 * 179.97438 * 25 9 8 46 46 H 1.08003 * 120.02371 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7105 -1.2303 5 6 2.4565 -0.1361 -2.3268 6 7 2.8037 -1.0949 -3.2351 7 6 2.4950 -2.3434 -2.7393 8 6 2.6318 -3.6283 -3.2419 9 6 2.2143 -4.7158 -2.4777 10 6 2.3577 -6.0849 -3.0095 11 8 2.8396 -6.2617 -4.1117 12 7 1.9545 -7.1394 -2.2733 13 6 2.0973 -8.4986 -2.8009 14 1 2.1120 -8.5304 -3.8903 15 6 3.2369 -9.2970 -2.1459 16 6 2.2045 -9.7550 -1.0983 17 1 2.1274 -9.0873 -0.2403 18 6 2.3443 -11.2024 -0.7027 19 6 2.6783 -12.1494 -1.6526 20 6 2.8114 -13.4764 -1.2887 21 6 2.6006 -13.8578 0.0232 22 6 2.2609 -12.9116 0.9720 23 6 2.1330 -11.5839 0.6091 24 6 1.1272 -9.5102 -2.1681 25 6 1.6577 -4.5160 -1.2065 26 6 1.5187 -3.2569 -0.7055 27 6 1.9332 -2.1549 -1.4607 28 1 -0.3934 0.4417 0.7649 29 1 1.7923 -0.5138 0.8901 30 1 3.5346 1.7703 0.0322 31 1 1.5616 2.4678 -1.2086 32 1 2.5866 0.9268 -2.4675 33 1 3.2045 -0.9229 -4.1015 34 1 3.0606 -3.7853 -4.2207 35 1 1.5697 -6.9984 -1.3941 36 1 3.6161 -10.1074 -2.7685 37 1 4.0290 -8.6708 -1.7356 38 1 2.8387 -11.8522 -2.6784 39 1 3.0763 -14.2157 -2.0301 40 1 2.7008 -14.8951 0.3067 41 1 2.0958 -13.2097 1.9968 42 1 1.8680 -10.8446 1.3505 43 1 0.2174 -9.0559 -1.7757 44 1 0.9308 -10.3787 -2.7967 45 1 1.3365 -5.3651 -0.6216 46 1 1.0895 -3.1096 0.2746 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705150_12335838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:30 Heat of formation + Delta-G solvation = 52.936820 kcal Electronic energy + Delta-G solvation = -28649.943343 eV Core-core repulsion = 24665.263671 eV Total energy + Delta-G solvation = -3984.679672 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.57816 -41.59680 -40.39781 -38.81756 -37.81394 -37.47376 -34.69269 -33.43625 -31.94274 -31.68696 -30.85768 -30.48753 -26.71796 -26.61488 -26.22686 -24.74516 -23.72985 -23.48416 -22.42041 -21.68808 -20.68207 -20.12775 -19.39263 -18.43810 -18.23668 -17.91922 -17.38950 -17.12802 -16.35561 -16.26923 -16.04291 -15.73233 -15.67362 -15.46037 -15.10465 -14.99671 -14.94498 -14.81492 -14.69091 -14.43844 -14.22942 -14.04092 -13.84055 -13.48162 -13.26886 -13.12761 -12.75454 -12.70390 -12.58072 -12.16056 -12.15008 -11.93108 -11.74225 -11.68932 -11.17866 -11.17233 -10.88335 -10.19237 -10.15022 -9.79934 -9.54043 -9.47104 -8.91729 -4.91585 -0.42414 0.30003 0.44722 0.51862 1.21937 1.37642 1.70878 1.78194 1.83280 2.01410 2.13478 2.78995 2.85174 3.44354 3.48204 3.56249 3.64728 3.69662 3.70648 3.75681 3.93963 4.02867 4.05918 4.06852 4.16992 4.20309 4.25597 4.29836 4.32524 4.41101 4.49328 4.58221 4.64194 4.68017 4.73925 4.76465 4.84133 4.90444 4.96807 5.00461 5.12122 5.15007 5.15623 5.20074 5.33093 5.38864 5.50762 5.52439 5.60754 5.66099 5.76279 5.87930 6.14416 6.35238 6.42505 7.03416 7.09246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.567 6.567 2 C -0.044 4.044 3 Si 0.780 3.220 4 C -0.188 4.188 5 C 0.066 3.934 6 N -0.579 5.579 7 C 0.067 3.933 8 C -0.069 4.069 9 C -0.131 4.131 10 C 0.565 3.435 11 O -0.581 6.581 12 N -0.692 5.692 13 C 0.114 3.886 14 H 0.085 0.915 15 C -0.143 4.143 16 C -0.065 4.065 17 H 0.112 0.888 18 C -0.079 4.079 19 C -0.128 4.128 20 C -0.131 4.131 21 C -0.138 4.138 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.123 4.123 25 C -0.105 4.105 26 C -0.075 4.075 27 C -0.082 4.082 28 H 0.400 0.600 29 H 0.086 0.914 30 H -0.292 1.292 31 H -0.290 1.290 32 H 0.185 0.815 33 H 0.433 0.567 34 H 0.129 0.871 35 H 0.416 0.584 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.159 0.841 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.082 2.477 6.939 7.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.377 6.377 2 C -0.154 4.154 3 Si 0.685 3.315 4 C -0.195 4.195 5 C -0.063 4.063 6 N -0.183 5.183 7 C -0.040 4.040 8 C -0.091 4.091 9 C -0.135 4.135 10 C 0.354 3.646 11 O -0.462 6.462 12 N -0.344 5.344 13 C 0.009 3.991 14 H 0.104 0.896 15 C -0.181 4.181 16 C -0.083 4.083 17 H 0.130 0.870 18 C -0.079 4.079 19 C -0.146 4.146 20 C -0.149 4.149 21 C -0.156 4.156 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.161 4.161 25 C -0.125 4.125 26 C -0.094 4.094 27 C -0.087 4.087 28 H 0.251 0.749 29 H 0.104 0.896 30 H -0.219 1.219 31 H -0.217 1.217 32 H 0.202 0.798 33 H 0.273 0.727 34 H 0.146 0.854 35 H 0.255 0.745 36 H 0.114 0.886 37 H 0.085 0.915 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.108 0.892 44 H 0.118 0.882 45 H 0.177 0.823 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.131 2.646 5.080 5.839 hybrid contribution 0.386 -0.454 -0.673 0.898 sum -0.746 2.193 4.407 4.979 Atomic orbital electron populations 1.86484 1.17731 1.82365 1.51114 1.24167 0.85317 1.10309 0.95594 0.94038 0.77227 0.74727 0.85551 1.20105 1.10058 0.91554 0.97781 1.22007 1.00201 0.94849 0.89276 1.41728 1.54421 1.03474 1.18664 1.18198 1.03836 0.86634 0.95347 1.20124 1.00194 0.88572 1.00200 1.19483 1.05678 0.91586 0.96746 1.18330 0.76866 0.85302 0.84135 1.90769 1.46495 1.86774 1.22149 1.45434 1.63020 1.04756 1.21151 1.21881 0.97726 0.80676 0.98814 0.89637 1.23596 0.96794 0.99751 0.97982 1.21633 0.96663 0.92386 0.97605 0.87037 1.19862 0.99110 0.95303 0.93606 1.21225 1.00329 0.93063 0.99989 1.21420 1.00023 0.96602 0.96878 1.21445 1.00098 1.00416 0.93661 1.21444 0.99579 0.93485 1.00313 1.21337 1.00360 0.96648 0.96129 1.23359 0.97216 0.98438 0.97100 1.20962 0.99336 0.98243 0.93911 1.20466 0.98388 0.90165 1.00358 1.19557 1.01325 0.93861 0.94000 0.74907 0.89647 1.21915 1.21744 0.79794 0.72727 0.85352 0.74539 0.88596 0.91539 0.85201 0.85045 0.85061 0.84787 0.84613 0.89186 0.88150 0.82312 0.83175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 0.38 12.86 -148.98 -1.92 -1.54 16 2 C -0.04 0.05 3.05 71.23 0.22 0.27 16 3 Si 0.78 -3.23 30.80 68.60 2.11 -1.11 16 4 C -0.19 -0.89 5.60 -18.64 -0.10 -0.99 16 5 C 0.07 0.20 10.43 83.09 0.87 1.06 16 6 N -0.58 -1.60 6.07 -187.71 -1.14 -2.74 16 7 C 0.07 0.45 7.26 38.96 0.28 0.74 16 8 C -0.07 -0.54 9.61 22.63 0.22 -0.32 16 9 C -0.13 -0.75 5.87 -20.08 -0.12 -0.87 16 10 C 0.56 4.35 7.76 86.71 0.67 5.03 16 11 O -0.58 -9.31 15.93 -4.01 -0.06 -9.37 16 12 N -0.69 -0.30 5.21 -443.15 -2.31 -2.61 16 13 C 0.11 0.07 4.30 45.52 0.20 0.26 16 14 H 0.09 0.44 7.50 -2.39 -0.02 0.42 16 15 C -0.14 0.04 7.27 31.21 0.23 0.27 16 16 C -0.06 0.20 3.87 -10.92 -0.04 0.15 16 17 H 0.11 -0.65 8.09 -2.39 -0.02 -0.67 16 18 C -0.08 -0.03 5.29 -19.87 -0.11 -0.13 16 19 C -0.13 -0.15 8.60 22.27 0.19 0.04 16 20 C -0.13 -0.22 10.05 22.27 0.22 0.01 16 21 C -0.14 -0.22 10.05 22.27 0.22 0.01 16 22 C -0.13 -0.13 10.05 22.27 0.22 0.09 16 23 C -0.13 -0.05 9.71 22.27 0.22 0.17 16 24 C -0.12 0.43 7.29 31.12 0.23 0.66 16 25 C -0.11 -0.05 9.46 22.28 0.21 0.16 16 26 C -0.08 -0.17 10.03 22.20 0.22 0.05 16 27 C -0.08 -0.53 6.35 -20.14 -0.13 -0.66 16 28 H 0.40 -4.56 8.74 -74.06 -0.65 -5.21 16 29 H 0.09 -0.39 7.96 -2.39 -0.02 -0.41 16 30 H -0.29 -0.51 7.11 99.48 0.71 0.19 16 31 H -0.29 -0.52 7.04 99.48 0.70 0.18 16 32 H 0.19 -0.22 6.31 -2.91 -0.02 -0.24 16 33 H 0.43 -1.27 8.96 -92.71 -0.83 -2.11 16 34 H 0.13 1.07 7.62 -2.91 -0.02 1.04 16 35 H 0.42 -2.42 6.69 -92.71 -0.62 -3.04 16 36 H 0.10 -0.04 6.34 -2.39 -0.02 -0.05 16 37 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.13 -0.16 6.68 -2.91 -0.02 -0.18 16 39 H 0.13 -0.18 8.06 -2.91 -0.02 -0.20 16 40 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 41 H 0.13 -0.33 8.06 -2.91 -0.02 -0.35 16 42 H 0.14 -0.48 8.06 -2.91 -0.02 -0.50 16 43 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 44 H 0.10 -0.33 7.71 -2.39 -0.02 -0.35 16 45 H 0.16 -1.13 6.36 -2.91 -0.02 -1.15 16 46 H 0.15 -0.33 8.06 -2.91 -0.02 -0.35 16 Total: 0.00 -24.59 382.44 -0.41 -25.01 By element: Atomic # 1 Polarization: -12.62 SS G_CDS: -1.02 Total: -13.64 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 3.92 Total: 6.00 kcal Atomic # 7 Polarization: -1.90 SS G_CDS: -3.45 Total: -5.34 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -1.98 Total: -10.91 kcal Atomic # 14 Polarization: -3.23 SS G_CDS: 2.11 Total: -1.11 kcal Total: -24.59 -0.41 -25.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_12335838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.942 kcal (2) G-P(sol) polarization free energy of solvation -24.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds