Wall clock time and date at job start Tue Mar 9 2021 13:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46692 * 2 1 4 4 C 1.53006 * 109.46764 * 174.99681 * 3 2 1 5 5 C 1.52995 * 109.46994 * 294.99909 * 3 2 1 6 6 C 1.50696 * 109.47422 * 67.20162 * 5 3 2 7 7 O 1.21275 * 120.00359 * 235.47576 * 6 5 3 8 8 N 1.34781 * 119.99822 * 55.47748 * 6 5 3 9 9 C 1.46496 * 119.99918 * 185.01402 * 8 6 5 10 10 H 1.09000 * 112.85076 * 23.79695 * 9 8 6 11 11 C 1.53777 * 113.61675 * 155.00055 * 9 8 6 12 12 C 1.53778 * 87.08400 * 89.11079 * 11 9 8 13 13 H 1.08994 * 113.61565 * 270.88455 * 12 11 9 14 14 C 1.50709 * 113.61334 * 140.06466 * 12 11 9 15 15 C 1.38227 * 120.00083 * 299.72820 * 14 12 11 16 16 C 1.38230 * 119.99894 * 179.80963 * 15 14 12 17 17 C 1.38230 * 120.00317 * 0.39832 * 16 15 14 18 18 C 1.38246 * 119.99684 * 359.85684 * 17 16 15 19 19 C 1.38231 * 119.99450 * 120.00272 * 14 12 11 20 20 C 1.53786 * 87.08022 * 25.43533 * 12 11 9 21 21 N 1.46506 * 109.46996 * 307.19879 * 5 3 2 22 22 C 1.36343 * 125.63295 * 67.35054 * 21 5 3 23 23 C 1.34849 * 108.21414 * 180.26250 * 22 21 5 24 24 C 1.40888 * 107.41884 * 359.73374 * 23 22 21 25 25 C 1.34853 * 107.41953 * 0.02562 * 24 23 22 26 26 C 1.50692 * 125.89211 * 180.02562 * 25 24 23 27 27 O 1.42902 * 109.47059 * 210.02477 * 26 25 24 28 28 Si 1.86301 * 109.47328 * 330.02239 * 26 25 24 29 29 H 1.08997 * 109.47374 * 313.56354 * 1 2 3 30 30 H 1.08998 * 109.47377 * 73.56432 * 1 2 3 31 31 H 1.09002 * 109.46728 * 193.56382 * 1 2 3 32 32 H 1.08999 * 109.46934 * 239.99995 * 2 1 3 33 33 H 1.09000 * 109.47154 * 119.99422 * 2 1 3 34 34 H 1.09000 * 109.47126 * 55.00359 * 3 2 1 35 35 H 1.08995 * 109.46817 * 186.61964 * 4 3 2 36 36 H 1.09002 * 109.47084 * 306.62515 * 4 3 2 37 37 H 1.09001 * 109.46724 * 66.62726 * 4 3 2 38 38 H 1.09003 * 109.46613 * 187.20558 * 5 3 2 39 39 H 0.97001 * 120.00105 * 5.01029 * 8 6 5 40 40 H 1.09001 * 113.61802 * 203.66303 * 11 9 8 41 41 H 1.09000 * 113.61374 * 334.56413 * 11 9 8 42 42 H 1.08003 * 119.99791 * 0.02562 * 15 14 12 43 43 H 1.08006 * 120.00080 * 180.23203 * 16 15 14 44 44 H 1.07999 * 120.00671 * 179.83509 * 17 16 15 45 45 H 1.07997 * 119.99605 * 179.97438 * 18 17 16 46 46 H 1.07996 * 120.00738 * 359.97438 * 19 14 12 47 47 H 1.08996 * 113.60911 * 220.02089 * 20 12 11 48 48 H 1.08990 * 113.61463 * 89.11587 * 20 12 11 49 49 H 1.07993 * 125.89253 * 0.02562 * 22 21 5 50 50 H 1.08001 * 126.28881 * 179.72046 * 23 22 21 51 51 H 1.08005 * 126.29528 * 179.97438 * 24 23 22 52 52 H 1.09003 * 109.47641 * 90.02111 * 26 25 24 53 53 H 0.96698 * 114.00171 * 59.99521 * 27 26 25 54 54 H 1.48501 * 110.00205 * 180.02562 * 28 26 25 55 55 H 1.48505 * 110.00161 * 301.32322 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5648 1.4444 0.1258 5 6 1.6352 2.1265 -1.3073 6 6 0.1370 2.2832 -1.3494 7 8 -0.4938 1.8337 -2.2826 8 7 -0.5020 2.9229 -0.3499 9 6 -1.9658 2.9799 -0.3345 10 1 -2.4269 2.1688 -0.8981 11 6 -2.5602 3.1690 1.0711 12 6 -2.4506 4.6835 0.8281 13 1 -1.4941 5.1068 1.1345 14 6 -3.6298 5.4652 1.3476 15 6 -4.8979 5.2078 0.8616 16 6 -5.9799 5.9220 1.3409 17 6 -5.7928 6.8993 2.3004 18 6 -4.5238 7.1604 2.7827 19 6 -3.4422 6.4434 2.3061 20 6 -2.5318 4.3687 -0.6750 21 7 2.0728 1.3094 -2.4418 22 6 1.5825 0.0807 -2.7718 23 6 2.2360 -0.3533 -3.8686 24 6 3.1594 0.6466 -4.2326 25 6 3.0354 1.6534 -3.3440 26 6 3.8277 2.9352 -3.3451 27 8 3.9689 3.4091 -2.0044 28 14 5.5135 2.6229 -4.0741 29 1 -0.3634 0.7082 0.7446 30 1 -0.3634 0.2908 -0.9856 31 1 -0.3633 -0.9990 0.2410 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.6053 1.9816 0.8418 35 1 3.9183 2.4687 0.2440 36 1 3.8584 0.8560 0.9951 37 1 4.0040 1.0099 -0.7722 38 1 2.1050 3.1085 -1.3642 39 1 0.0073 3.3456 0.3592 40 1 -3.5869 2.8146 1.1624 41 1 -1.9138 2.8073 1.8708 42 1 -5.0437 4.4462 0.1098 43 1 -6.9713 5.7183 0.9639 44 1 -6.6378 7.4592 2.6730 45 1 -4.3775 7.9243 3.5320 46 1 -2.4509 6.6473 2.6830 47 1 -1.8625 4.9754 -1.2849 48 1 -3.5507 4.3422 -1.0611 49 1 0.8074 -0.4544 -2.2435 50 1 2.0802 -1.2945 -4.3748 51 1 3.8418 0.6127 -5.0691 52 1 3.3068 3.6839 -3.9421 53 1 4.4246 2.7925 -1.4152 54 1 6.3050 3.8793 -4.0803 55 1 6.2217 1.5809 -3.2879 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705150_12360566.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:45:07 Heat of formation + Delta-G solvation = 60.970495 kcal Electronic energy + Delta-G solvation = -35391.703043 eV Core-core repulsion = 31169.899683 eV Total energy + Delta-G solvation = -4221.803360 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.209 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.07648 -41.53677 -40.37752 -38.81753 -38.06963 -37.47722 -34.60392 -33.11702 -31.90450 -31.61137 -31.39150 -30.87167 -28.32925 -26.74613 -26.05317 -25.97069 -24.63361 -23.60785 -22.73466 -22.26213 -21.74562 -21.50027 -20.47244 -20.13995 -19.00357 -18.19480 -17.89515 -17.40356 -17.07127 -16.87505 -16.37684 -16.17441 -16.13192 -15.62923 -15.42404 -15.25721 -15.17136 -14.79956 -14.68572 -14.51237 -14.37075 -14.27165 -14.15542 -14.06479 -13.94943 -13.82642 -13.49751 -13.28873 -13.16014 -13.04385 -12.89179 -12.76532 -12.50972 -12.34664 -12.20291 -12.09917 -11.90262 -11.80747 -11.72380 -11.62427 -11.55038 -11.19812 -11.10033 -10.76821 -10.14595 -9.83160 -9.56796 -9.50936 -8.83136 -4.87113 0.41638 0.48603 1.06982 1.28654 1.38037 1.67622 1.79947 1.98298 2.11889 2.22856 2.81943 3.12873 3.34869 3.43100 3.50421 3.59468 3.66488 3.69595 3.77139 3.90321 3.95242 4.04146 4.13696 4.14227 4.22749 4.24482 4.28089 4.29018 4.40097 4.52973 4.54451 4.55303 4.60817 4.61989 4.65678 4.72907 4.73602 4.73671 4.79278 4.82070 4.93341 4.93911 4.97727 5.05784 5.10647 5.12132 5.14180 5.16609 5.18331 5.32448 5.36389 5.43395 5.48831 5.57622 5.63142 5.72934 6.02138 6.11272 6.24892 6.26755 6.35544 6.47942 7.04876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.139 4.139 3 C -0.088 4.088 4 C -0.157 4.157 5 C 0.106 3.894 6 C 0.521 3.479 7 O -0.560 6.560 8 N -0.694 5.694 9 C 0.123 3.877 10 H 0.085 0.915 11 C -0.122 4.122 12 C -0.065 4.065 13 H 0.110 0.890 14 C -0.079 4.079 15 C -0.128 4.128 16 C -0.131 4.131 17 C -0.138 4.138 18 C -0.131 4.131 19 C -0.128 4.128 20 C -0.145 4.145 21 N -0.414 5.414 22 C 0.008 3.992 23 C -0.226 4.226 24 C -0.194 4.194 25 C -0.031 4.031 26 C -0.059 4.059 27 O -0.547 6.547 28 Si 0.791 3.209 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.151 0.849 39 H 0.415 0.585 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.063 0.937 48 H 0.093 0.907 49 H 0.160 0.840 50 H 0.142 0.858 51 H 0.164 0.836 52 H 0.123 0.877 53 H 0.381 0.619 54 H -0.290 1.290 55 H -0.287 1.287 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 1.099 4.387 4.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.177 4.177 3 C -0.107 4.107 4 C -0.214 4.214 5 C 0.000 4.000 6 C 0.307 3.693 7 O -0.439 6.439 8 N -0.347 5.347 9 C 0.018 3.982 10 H 0.104 0.896 11 C -0.160 4.160 12 C -0.083 4.083 13 H 0.128 0.872 14 C -0.079 4.079 15 C -0.146 4.146 16 C -0.149 4.149 17 C -0.156 4.156 18 C -0.149 4.149 19 C -0.145 4.145 20 C -0.183 4.183 21 N -0.090 5.090 22 C -0.121 4.121 23 C -0.250 4.250 24 C -0.219 4.219 25 C -0.142 4.142 26 C -0.167 4.167 27 O -0.358 6.358 28 Si 0.693 3.307 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.132 0.868 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.168 0.832 39 H 0.253 0.747 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.152 0.848 46 H 0.153 0.847 47 H 0.082 0.918 48 H 0.111 0.889 49 H 0.177 0.823 50 H 0.159 0.841 51 H 0.181 0.819 52 H 0.141 0.859 53 H 0.234 0.766 54 H -0.218 1.218 55 H -0.213 1.213 Dipole moment (debyes) X Y Z Total from point charges 1.371 1.490 3.924 4.416 hybrid contribution -0.434 0.006 1.291 1.362 sum 0.937 1.496 5.215 5.505 Atomic orbital electron populations 1.22309 0.96060 1.02592 1.02683 1.21980 0.95804 0.96209 1.03663 1.21556 0.97969 0.96951 0.94228 1.21991 0.93619 1.03214 1.02530 1.21855 0.91945 0.98777 0.87441 1.20627 0.90017 0.76754 0.81876 1.90780 1.68388 1.49868 1.34824 1.45509 1.06616 1.55950 1.26601 1.21781 0.79801 0.98041 0.98624 0.89648 1.23344 1.02563 0.94352 0.95694 1.21581 0.96712 0.94722 0.95272 0.87193 1.19874 0.94681 0.96687 0.96675 1.21216 0.92459 1.00446 1.00476 1.21421 0.99620 0.96424 0.97437 1.21447 0.97945 0.98480 0.97748 1.21450 0.92973 1.00092 1.00336 1.21328 0.99723 0.96094 0.97397 1.23546 1.02075 0.96608 0.96100 1.43506 1.29086 1.14507 1.21888 1.21923 1.02408 0.87795 1.00021 1.21092 1.02237 1.01949 0.99688 1.20889 1.04597 0.94275 1.02104 1.20970 0.98136 0.99385 0.95666 1.24957 1.09976 0.93956 0.87831 1.86520 1.79869 1.49126 1.20275 0.93221 0.70823 0.77076 0.89547 0.91135 0.92480 0.92640 0.91070 0.90312 0.86848 0.90227 0.90306 0.93554 0.83191 0.74727 0.88403 0.89043 0.85237 0.85035 0.85061 0.84835 0.84708 0.91827 0.88908 0.82279 0.84066 0.81876 0.85928 0.76648 1.21757 1.21334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.09 7.83 71.98 0.56 0.65 16 2 C -0.14 0.28 4.85 30.60 0.15 0.43 16 3 C -0.09 0.44 2.34 -10.79 -0.03 0.42 16 4 C -0.16 0.92 7.63 71.98 0.55 1.47 16 5 C 0.11 -0.04 2.19 44.24 0.10 0.06 16 6 C 0.52 1.24 4.24 87.66 0.37 1.61 16 7 O -0.56 -6.36 13.47 -3.01 -0.04 -6.40 16 8 N -0.69 2.71 4.07 -440.05 -1.79 0.92 16 9 C 0.12 -0.30 4.29 45.52 0.20 -0.10 16 10 H 0.09 0.19 7.53 -2.39 -0.02 0.17 16 11 C -0.12 0.70 7.29 31.12 0.23 0.93 16 12 C -0.06 0.29 3.85 -11.01 -0.04 0.25 16 13 H 0.11 -0.78 8.09 -2.39 -0.02 -0.80 16 14 C -0.08 0.04 5.29 -19.87 -0.11 -0.07 16 15 C -0.13 -0.07 8.63 22.27 0.19 0.12 16 16 C -0.13 -0.16 10.05 22.27 0.22 0.07 16 17 C -0.14 -0.17 10.05 22.27 0.22 0.06 16 18 C -0.13 -0.08 10.05 22.27 0.22 0.14 16 19 C -0.13 0.02 9.71 22.27 0.22 0.24 16 20 C -0.14 0.26 7.26 31.12 0.23 0.48 16 21 N -0.41 -1.70 1.89 -491.52 -0.93 -2.63 16 22 C 0.01 0.06 6.84 83.21 0.57 0.63 16 23 C -0.23 -1.52 10.86 22.14 0.24 -1.28 16 24 C -0.19 -0.82 9.43 22.14 0.21 -0.61 16 25 C -0.03 -0.12 5.88 41.08 0.24 0.12 16 26 C -0.06 -0.02 2.94 71.23 0.21 0.19 16 27 O -0.55 0.11 9.66 -148.98 -1.44 -1.32 16 28 Si 0.79 -1.08 31.14 68.60 2.14 1.05 16 29 H 0.07 -0.21 7.16 -2.39 -0.02 -0.23 16 30 H 0.06 0.26 3.36 -2.39 -0.01 0.25 16 31 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.07 0.12 4.55 -2.39 -0.01 0.11 16 33 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 34 H 0.11 -1.10 7.16 -2.39 -0.02 -1.12 16 35 H 0.08 -0.68 6.75 -2.39 -0.02 -0.69 16 36 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 37 H 0.05 -0.09 6.73 -2.39 -0.02 -0.11 16 38 H 0.15 -0.19 5.46 -2.39 -0.01 -0.20 16 39 H 0.42 -3.97 7.93 -92.71 -0.73 -4.70 16 40 H 0.10 -0.48 7.73 -2.39 -0.02 -0.50 16 41 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 42 H 0.13 -0.24 6.65 -2.91 -0.02 -0.26 16 43 H 0.13 -0.23 8.06 -2.91 -0.02 -0.26 16 44 H 0.13 -0.24 8.06 -2.91 -0.02 -0.27 16 45 H 0.13 -0.36 8.06 -2.91 -0.02 -0.38 16 46 H 0.14 -0.53 8.05 -2.91 -0.02 -0.55 16 47 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 48 H 0.09 -0.11 6.31 -2.39 -0.02 -0.12 16 49 H 0.16 1.09 4.92 -2.91 -0.01 1.08 16 50 H 0.14 0.63 8.06 -2.91 -0.02 0.61 16 51 H 0.16 -0.20 6.89 -2.91 -0.02 -0.22 16 52 H 0.12 -0.06 7.96 -2.39 -0.02 -0.08 16 53 H 0.38 -1.28 4.73 -74.06 -0.35 -1.63 16 54 H -0.29 -1.27 7.11 99.48 0.71 -0.57 16 55 H -0.29 -1.05 7.11 99.48 0.71 -0.34 16 Total: 0.00 -17.59 406.82 2.56 -15.02 By element: Atomic # 1 Polarization: -12.31 SS G_CDS: -0.13 Total: -12.44 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 4.75 Total: 5.79 kcal Atomic # 7 Polarization: 1.01 SS G_CDS: -2.72 Total: -1.71 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -1.48 Total: -7.73 kcal Atomic # 14 Polarization: -1.08 SS G_CDS: 2.14 Total: 1.05 kcal Total: -17.59 2.56 -15.02 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_12360566.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.995 kcal (2) G-P(sol) polarization free energy of solvation -17.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds