Wall clock time and date at job start Tue Mar 9 2021 13:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86308 * 109.47274 * 2 1 4 4 C 1.50705 * 109.46665 * 119.99687 * 2 1 3 5 5 C 1.38180 * 119.84581 * 14.99783 * 4 2 1 6 6 C 1.38312 * 120.14750 * 179.97438 * 5 4 2 7 7 F 1.35100 * 120.08551 * 180.02562 * 6 5 4 8 8 C 1.39810 * 119.82950 * 359.97438 * 6 5 4 9 9 C 1.47694 * 120.15246 * 180.02562 * 8 6 5 10 10 O 1.21575 * 120.00195 * 359.97438 * 9 8 6 11 11 N 1.34773 * 120.00011 * 179.97438 * 9 8 6 12 12 C 1.46499 * 120.00415 * 180.02562 * 11 9 8 13 13 H 1.09005 * 112.84682 * 25.32504 * 12 11 9 14 14 C 1.53780 * 113.61903 * 156.52759 * 12 11 9 15 15 C 1.53772 * 87.08162 * 89.11357 * 14 12 11 16 16 H 1.09002 * 113.61717 * 270.79675 * 15 14 12 17 17 C 1.50707 * 113.61386 * 139.98015 * 15 14 12 18 18 C 1.38231 * 120.00240 * 299.73106 * 17 15 14 19 19 C 1.38236 * 120.00241 * 179.78537 * 18 17 15 20 20 C 1.38234 * 119.99549 * 0.46166 * 19 18 17 21 21 C 1.38231 * 120.00307 * 359.76852 * 20 19 18 22 22 C 1.38236 * 119.99690 * 119.99780 * 17 15 14 23 23 C 1.53783 * 113.61623 * 254.13520 * 12 11 9 24 24 C 1.39655 * 119.69067 * 0.02562 * 8 6 5 25 25 C 1.38063 * 119.84983 * 0.25140 * 24 8 6 26 26 F 1.35099 * 119.91485 * 179.74756 * 25 24 8 27 27 H 0.96701 * 113.99428 * 60.00293 * 1 2 3 28 28 H 1.08995 * 109.47135 * 239.99659 * 2 1 3 29 29 H 1.48500 * 109.99899 * 59.99530 * 3 2 1 30 30 H 1.48496 * 109.99829 * 181.31858 * 3 2 1 31 31 H 1.07997 * 119.92551 * 359.95865 * 5 4 2 32 32 H 0.97003 * 119.99703 * 359.97438 * 11 9 8 33 33 H 1.09004 * 113.61379 * 203.66757 * 14 12 11 34 34 H 1.09001 * 113.60891 * 334.48054 * 14 12 11 35 35 H 1.08006 * 119.99650 * 359.97438 * 18 17 15 36 36 H 1.07992 * 120.00085 * 180.24838 * 19 18 17 37 37 H 1.08000 * 119.99613 * 179.78744 * 20 19 18 38 38 H 1.08001 * 120.00009 * 180.02562 * 21 20 19 39 39 H 1.08002 * 120.00502 * 359.97438 * 22 17 15 40 40 H 1.09010 * 113.61157 * 25.42418 * 23 12 11 41 41 H 1.08991 * 113.62062 * 156.33129 * 23 12 11 42 42 H 1.08002 * 120.07040 * 179.97438 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 1.2306 5 6 1.0689 -1.4960 1.9712 6 6 1.5233 -2.1512 3.1013 7 9 0.6793 -2.9195 3.8242 8 6 2.8587 -2.0173 3.4931 9 6 3.3517 -2.7142 4.6984 10 8 2.5957 -3.4059 5.3526 11 7 4.6397 -2.5833 5.0730 12 6 5.1289 -3.2750 6.2682 13 1 4.5477 -4.1650 6.5098 14 6 6.6481 -3.5138 6.2634 15 6 6.7871 -2.1386 6.9372 16 1 6.8780 -1.3134 6.2308 17 6 7.8346 -2.1000 8.0200 18 6 7.7205 -2.9269 9.1218 19 6 8.6836 -2.8948 10.1129 20 6 9.7558 -2.0287 10.0067 21 6 9.8674 -1.1984 8.9073 22 6 8.9066 -1.2337 7.9141 23 6 5.3561 -2.3427 7.4699 24 6 3.7243 -1.2215 2.7395 25 6 3.2554 -0.5687 1.6169 26 9 4.0903 0.2055 0.8898 27 1 -0.3932 0.4417 -0.7651 28 1 1.7923 -0.5139 -0.8899 29 1 1.5615 2.4680 1.2084 30 1 3.5346 1.7703 -0.0321 31 1 0.0377 -1.5985 1.6670 32 1 5.2430 -2.0318 4.5508 33 1 6.9616 -4.3440 6.8964 34 1 7.0800 -3.5573 5.2635 35 1 6.8804 -3.6004 9.2068 36 1 8.5966 -3.5437 10.9717 37 1 10.5065 -2.0011 10.7827 38 1 10.7053 -0.5221 8.8242 39 1 8.9937 -0.5847 7.0551 40 1 4.7460 -1.4397 7.4434 41 1 5.3171 -2.8531 8.4321 42 1 4.7569 -1.1134 3.0368 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705150_12360598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:45:18 Heat of formation + Delta-G solvation = -55.775811 kcal Electronic energy + Delta-G solvation = -29124.267872 eV Core-core repulsion = 24673.381927 eV Total energy + Delta-G solvation = -4450.885945 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.61492 -50.20612 -41.83971 -40.79954 -39.86770 -38.74053 -37.63465 -34.97385 -33.23309 -31.87832 -31.59800 -31.47044 -28.11179 -26.77023 -26.14804 -24.36431 -24.03580 -23.44314 -22.49029 -22.06442 -20.29073 -19.82004 -18.95443 -18.58611 -18.20962 -17.93064 -17.60934 -17.18818 -16.99700 -16.87987 -16.26844 -16.20601 -16.00604 -15.89025 -15.87503 -15.74691 -15.37294 -15.06358 -14.91217 -14.51607 -14.27396 -14.19941 -14.07348 -13.71594 -13.52825 -13.22819 -13.10003 -13.06712 -12.78095 -12.55490 -12.18949 -11.80359 -11.75325 -11.72289 -11.31790 -11.22616 -11.06380 -10.31638 -10.23015 -9.83294 -9.76739 -9.57280 -4.93947 -0.89001 -0.40815 0.41317 0.48599 1.10612 1.43323 1.66817 1.72948 1.97155 2.16949 2.62456 2.73723 2.81548 2.91755 3.10236 3.36209 3.41816 3.59101 3.63617 3.68084 3.85273 3.88928 4.02880 4.09827 4.13758 4.22108 4.23938 4.28644 4.39720 4.47102 4.55027 4.59260 4.61623 4.65054 4.72363 4.73935 4.78052 4.91105 4.95410 5.05921 5.11336 5.16428 5.29000 5.42168 5.57340 5.63104 5.72004 6.11126 6.21912 6.81173 6.90205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.081 4.081 3 Si 0.773 3.227 4 C -0.060 4.060 5 C -0.114 4.114 6 C 0.138 3.862 7 F -0.126 7.126 8 C -0.161 4.161 9 C 0.562 3.438 10 O -0.560 6.560 11 N -0.689 5.689 12 C 0.114 3.886 13 H 0.089 0.911 14 C -0.122 4.122 15 C -0.066 4.066 16 H 0.111 0.889 17 C -0.080 4.080 18 C -0.128 4.128 19 C -0.131 4.131 20 C -0.138 4.138 21 C -0.131 4.131 22 C -0.127 4.127 23 C -0.143 4.143 24 C -0.068 4.068 25 C 0.058 3.942 26 F -0.114 7.114 27 H 0.412 0.588 28 H 0.119 0.881 29 H -0.313 1.313 30 H -0.254 1.254 31 H 0.168 0.832 32 H 0.416 0.584 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.841 3.702 -6.232 8.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.189 4.189 3 Si 0.676 3.324 4 C -0.062 4.062 5 C -0.133 4.133 6 C 0.117 3.883 7 F -0.104 7.104 8 C -0.165 4.165 9 C 0.349 3.651 10 O -0.439 6.439 11 N -0.341 5.341 12 C 0.009 3.991 13 H 0.107 0.893 14 C -0.159 4.159 15 C -0.084 4.084 16 H 0.129 0.871 17 C -0.080 4.080 18 C -0.146 4.146 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.182 4.182 24 C -0.087 4.087 25 C 0.038 3.962 26 F -0.092 7.092 27 H 0.265 0.735 28 H 0.136 0.864 29 H -0.241 1.241 30 H -0.180 1.180 31 H 0.186 0.814 32 H 0.254 0.746 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.885 3.468 -4.807 7.087 hybrid contribution 0.081 -0.406 0.476 0.630 sum 3.966 3.062 -4.331 6.623 Atomic orbital electron populations 1.86342 1.16175 1.82585 1.51978 1.24818 0.87015 1.10895 0.96211 0.94862 0.78044 0.73057 0.86419 1.19834 0.91619 0.96482 0.98220 1.20872 1.02771 0.96720 0.92894 1.18023 0.87119 0.92001 0.91156 1.91590 1.69903 1.72407 1.76481 1.19793 0.93361 1.04383 0.99013 1.18006 0.82807 0.80508 0.83743 1.90866 1.56625 1.40850 1.55607 1.45405 1.09656 1.50549 1.28513 1.21927 0.96293 0.95917 0.84949 0.89307 1.23357 0.92595 0.97343 1.02649 1.21649 0.92033 0.98949 0.95769 0.87068 1.19856 0.95965 0.96371 0.95769 1.21233 0.99512 0.99693 0.94139 1.21425 0.94699 0.99253 0.99501 1.21449 0.98768 0.96603 0.98764 1.21446 0.99585 0.99438 0.94387 1.21331 0.94397 0.99150 0.99658 1.23611 0.95936 1.00170 0.98480 1.21291 1.01633 0.93745 0.92013 1.17303 0.87947 0.97283 0.93642 1.91528 1.70672 1.71173 1.75844 0.73492 0.86375 1.24142 1.17988 0.81443 0.74557 0.87986 0.89007 0.85114 0.84985 0.85037 0.84817 0.84693 0.91547 0.88422 0.79755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.68 11.47 -148.98 -1.71 0.97 16 2 C -0.08 0.36 2.96 71.24 0.21 0.57 16 3 Si 0.77 -3.37 30.72 68.60 2.11 -1.27 16 4 C -0.06 -0.07 5.17 -19.78 -0.10 -0.17 16 5 C -0.11 -0.43 9.33 22.27 0.21 -0.23 16 6 C 0.14 1.04 7.28 22.67 0.17 1.20 16 7 F -0.13 -1.68 15.55 44.97 0.70 -0.98 16 8 C -0.16 -0.68 5.88 -20.06 -0.12 -0.80 16 9 C 0.56 3.84 7.77 86.74 0.67 4.52 16 10 O -0.56 -9.04 14.96 -3.95 -0.06 -9.10 16 11 N -0.69 0.65 5.21 -443.05 -2.31 -1.66 16 12 C 0.11 -0.05 4.30 45.52 0.20 0.14 16 13 H 0.09 0.36 7.50 -2.38 -0.02 0.34 16 14 C -0.12 0.56 7.29 31.12 0.23 0.79 16 15 C -0.07 0.25 3.87 -10.92 -0.04 0.20 16 16 H 0.11 -0.74 8.09 -2.39 -0.02 -0.76 16 17 C -0.08 0.01 5.29 -19.86 -0.11 -0.10 16 18 C -0.13 -0.10 8.63 22.27 0.19 0.09 16 19 C -0.13 -0.18 10.05 22.27 0.22 0.04 16 20 C -0.14 -0.19 10.05 22.27 0.22 0.03 16 21 C -0.13 -0.11 10.05 22.27 0.22 0.11 16 22 C -0.13 -0.02 9.71 22.27 0.22 0.20 16 23 C -0.14 0.14 7.27 31.21 0.23 0.37 16 24 C -0.07 0.12 9.51 22.57 0.21 0.34 16 25 C 0.06 0.01 6.65 22.33 0.15 0.16 16 26 F -0.11 -0.05 12.82 44.97 0.58 0.53 16 27 H 0.41 -6.20 8.74 -74.06 -0.65 -6.85 16 28 H 0.12 -1.07 7.96 -2.39 -0.02 -1.09 16 29 H -0.31 -1.64 7.11 99.48 0.71 -0.94 16 30 H -0.25 0.03 5.38 99.48 0.54 0.56 16 31 H 0.17 0.47 7.12 -2.91 -0.02 0.45 16 32 H 0.42 -3.24 6.74 -92.71 -0.62 -3.86 16 33 H 0.10 -0.44 7.73 -2.38 -0.02 -0.46 16 34 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H 0.13 -0.23 6.64 -2.91 -0.02 -0.25 16 36 H 0.13 -0.22 8.06 -2.91 -0.02 -0.24 16 37 H 0.13 -0.22 8.06 -2.91 -0.02 -0.25 16 38 H 0.13 -0.33 8.06 -2.91 -0.02 -0.36 16 39 H 0.14 -0.50 8.05 -2.91 -0.02 -0.52 16 40 H 0.07 0.07 8.14 -2.38 -0.02 0.05 16 41 H 0.10 -0.10 6.30 -2.39 -0.02 -0.11 16 42 H 0.19 -1.77 6.40 -2.91 -0.02 -1.79 16 Total: 0.00 -22.74 355.98 1.98 -20.76 By element: Atomic # 1 Polarization: -16.41 SS G_CDS: -0.31 Total: -16.72 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 2.98 Total: 7.47 kcal Atomic # 7 Polarization: 0.65 SS G_CDS: -2.31 Total: -1.66 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -1.77 Total: -8.13 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 1.28 Total: -0.45 kcal Atomic # 14 Polarization: -3.37 SS G_CDS: 2.11 Total: -1.27 kcal Total: -22.74 1.98 -20.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_12360598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.017 kcal (2) G-P(sol) polarization free energy of solvation -22.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds