Wall clock time and date at job start Tue Mar 9 2021 13:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86298 * 109.47014 * 2 1 4 4 C 1.50703 * 109.47027 * 119.99835 * 2 1 3 5 5 C 1.38562 * 120.32393 * 245.00698 * 4 2 1 6 6 N 1.31519 * 120.90437 * 179.97438 * 5 4 2 7 7 C 1.32721 * 121.64343 * 359.97438 * 6 5 4 8 8 C 1.48168 * 119.72302 * 179.97438 * 7 6 5 9 9 O 1.21519 * 119.99953 * 180.02562 * 8 7 6 10 10 N 1.34771 * 119.99999 * 0.02562 * 8 7 6 11 11 C 1.46503 * 119.99651 * 179.97438 * 10 8 7 12 12 H 1.08997 * 112.85425 * 23.80841 * 11 10 8 13 13 C 1.53783 * 113.61161 * 155.00378 * 11 10 8 14 14 C 1.53786 * 87.08128 * 89.11660 * 13 11 10 15 15 H 1.08996 * 113.61494 * 270.79832 * 14 13 11 16 16 C 1.50699 * 113.61618 * 139.97912 * 14 13 11 17 17 C 1.38233 * 120.00071 * 299.72877 * 16 14 13 18 18 C 1.38240 * 119.99915 * 179.74219 * 17 16 14 19 19 C 1.38236 * 119.99961 * 0.55208 * 18 17 16 20 20 C 1.38235 * 119.99694 * 359.70233 * 19 18 17 21 21 C 1.38233 * 120.00368 * 0.02562 * 20 19 18 22 22 C 1.53779 * 113.61586 * 252.50032 * 11 10 8 23 23 C 1.39314 * 120.55175 * 0.02562 * 7 6 5 24 24 C 1.38591 * 119.05868 * 0.23445 * 23 7 6 25 25 H 0.96703 * 113.99654 * 60.00596 * 1 2 3 26 26 H 1.08995 * 109.47436 * 239.99714 * 2 1 3 27 27 H 1.48497 * 110.00157 * 298.67713 * 3 2 1 28 28 H 1.48508 * 110.00054 * 59.99714 * 3 2 1 29 29 H 1.08003 * 119.54823 * 359.96843 * 5 4 2 30 30 H 0.96995 * 120.00301 * 0.02562 * 10 8 7 31 31 H 1.08997 * 113.61504 * 203.66345 * 13 11 10 32 32 H 1.09001 * 113.61448 * 334.48556 * 13 11 10 33 33 H 1.08001 * 119.99894 * 0.02562 * 17 16 14 34 34 H 1.07997 * 119.99763 * 180.27757 * 18 17 16 35 35 H 1.07999 * 119.99971 * 179.72521 * 19 18 17 36 36 H 1.08001 * 119.99507 * 179.97438 * 20 19 18 37 37 H 1.07997 * 119.99843 * 179.97438 * 21 20 19 38 38 H 1.08999 * 113.61421 * 25.43482 * 22 11 10 39 39 H 1.08999 * 113.61861 * 156.33965 * 22 11 10 40 40 H 1.08002 * 120.46654 * 179.97438 * 23 7 6 41 41 H 1.08001 * 120.75348 * 179.74927 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6409 -0.0171 2.1979 6 7 3.0842 -0.6255 3.2763 7 6 2.8719 -1.9193 3.4828 8 6 3.3911 -2.5618 4.7129 9 8 3.2001 -3.7461 4.9068 10 7 4.0752 -1.8327 5.6166 11 6 4.5880 -2.4679 6.8331 12 1 4.7297 -3.5429 6.7219 13 6 5.8028 -1.7460 7.4398 14 6 4.8001 -0.8988 8.2410 15 1 4.4776 0.0034 7.7214 16 6 5.2319 -0.6341 9.6603 17 6 5.4420 -1.6901 10.5272 18 6 5.8433 -1.4475 11.8276 19 6 6.0234 -0.1483 12.2644 20 6 5.8083 0.9079 11.3989 21 6 5.4124 0.6650 10.0969 22 6 3.8183 -2.0746 8.1049 23 6 2.1660 -2.6785 2.5522 24 6 1.6917 -2.0648 1.4036 25 1 -0.3933 0.4416 -0.7651 26 1 1.7924 -0.5138 -0.8899 27 1 1.5879 2.4585 -1.2242 28 1 1.5613 2.4679 1.2085 29 1 2.8328 1.0373 2.0644 30 1 4.2274 -0.8873 5.4621 31 1 6.4267 -2.3881 8.0615 32 1 6.3779 -1.1727 6.7127 33 1 5.2970 -2.7049 10.1872 34 1 6.0117 -2.2727 12.5036 35 1 6.3326 0.0414 13.2816 36 1 5.9486 1.9228 11.7403 37 1 5.2440 1.4903 9.4209 38 1 2.7904 -1.7654 7.9151 39 1 3.8996 -2.8065 8.9085 40 1 1.9944 -3.7313 2.7214 41 1 1.1446 -2.6281 0.6621 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705150_13287726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:46:22 Heat of formation + Delta-G solvation = 31.473310 kcal Electronic energy + Delta-G solvation = -24073.141152 eV Core-core repulsion = 20499.520652 eV Total energy + Delta-G solvation = -3573.620499 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.00903 -41.23910 -40.07220 -38.71533 -37.94359 -34.86948 -33.74311 -33.03438 -31.85722 -31.53024 -28.03450 -26.72213 -26.06654 -25.02870 -23.98443 -23.41722 -22.44414 -21.97155 -20.14796 -19.35445 -18.65057 -18.19572 -17.91396 -16.97715 -16.87155 -16.41180 -16.31736 -16.14832 -15.93757 -15.51040 -15.30107 -15.06541 -14.69712 -14.60346 -14.26674 -14.21614 -14.05539 -14.00764 -13.94713 -13.46712 -13.11605 -12.74168 -12.54895 -12.17512 -12.10915 -11.76634 -11.70099 -11.47945 -11.18238 -11.07769 -10.81739 -10.53933 -10.35290 -10.09555 -9.80288 -9.54159 -4.93091 -0.61584 0.06876 0.44360 0.51435 1.23576 1.49733 1.60019 1.88798 1.94829 2.60721 2.84751 2.90388 3.26948 3.45016 3.60413 3.64585 3.68901 3.73802 3.78977 3.88891 3.93605 4.06256 4.16750 4.17098 4.25601 4.31540 4.38074 4.56023 4.57368 4.63377 4.66596 4.76022 4.79918 4.88924 4.95772 4.98707 4.99892 5.12920 5.14448 5.19692 5.36145 5.48997 5.60314 5.65623 5.75691 6.13968 6.24429 6.53937 6.59274 7.01036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.082 4.082 3 Si 0.761 3.239 4 C -0.103 4.103 5 C 0.099 3.901 6 N -0.459 5.459 7 C 0.062 3.938 8 C 0.573 3.427 9 O -0.564 6.564 10 N -0.682 5.682 11 C 0.112 3.888 12 H 0.094 0.906 13 C -0.122 4.122 14 C -0.067 4.067 15 H 0.105 0.895 16 C -0.079 4.079 17 C -0.127 4.127 18 C -0.130 4.130 19 C -0.138 4.138 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.142 4.142 23 C -0.115 4.115 24 C -0.054 4.054 25 H 0.400 0.600 26 H 0.110 0.890 27 H -0.282 1.282 28 H -0.292 1.292 29 H 0.183 0.817 30 H 0.420 0.580 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.063 0.937 39 H 0.101 0.899 40 H 0.152 0.848 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.584 3.360 -3.759 5.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.191 4.191 3 Si 0.666 3.334 4 C -0.105 4.105 5 C -0.061 4.061 6 N -0.170 5.170 7 C -0.075 4.075 8 C 0.358 3.642 9 O -0.443 6.443 10 N -0.333 5.333 11 C 0.007 3.993 12 H 0.112 0.888 13 C -0.160 4.160 14 C -0.085 4.085 15 H 0.123 0.877 16 C -0.079 4.079 17 C -0.145 4.145 18 C -0.148 4.148 19 C -0.156 4.156 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.180 4.180 23 C -0.136 4.136 24 C -0.079 4.079 25 H 0.251 0.749 26 H 0.128 0.872 27 H -0.208 1.208 28 H -0.219 1.219 29 H 0.199 0.801 30 H 0.258 0.742 31 H 0.123 0.877 32 H 0.105 0.895 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.082 0.918 39 H 0.119 0.881 40 H 0.169 0.831 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.828 3.482 -2.401 5.088 hybrid contribution -1.731 -0.191 -0.983 1.999 sum 1.098 3.291 -3.383 4.846 Atomic orbital electron populations 1.86537 1.17948 1.80841 1.51434 1.24919 0.84518 1.12039 0.97661 0.94169 0.90123 0.71922 0.77202 1.20788 0.97891 0.94958 0.96911 1.22973 0.94217 1.00694 0.88200 1.67506 1.18793 1.09047 1.21667 1.21076 0.99781 0.90883 0.95806 1.18060 0.77887 0.85598 0.82627 1.90786 1.59258 1.16304 1.77912 1.45462 1.54102 1.13998 1.19702 1.21966 0.95657 0.98302 0.83372 0.88784 1.23359 0.95472 0.98366 0.98805 1.21571 0.96768 0.98243 0.91948 0.87730 1.19853 0.99156 0.93343 0.95523 1.21236 0.99988 0.99496 0.93762 1.21433 0.99418 0.97500 0.96423 1.21450 1.00507 0.93071 1.00555 1.21435 0.99423 0.99943 0.94035 1.21324 1.00118 0.96801 0.96456 1.23556 0.98568 0.98263 0.97621 1.22298 0.95513 1.02402 0.93398 1.21766 0.95336 0.94166 0.96657 0.74863 0.87247 1.20815 1.21904 0.80055 0.74245 0.87731 0.89509 0.84913 0.84823 0.84963 0.84848 0.84972 0.91791 0.88061 0.83075 0.81853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.08 12.82 -148.98 -1.91 -0.83 16 2 C -0.08 0.42 2.81 71.24 0.20 0.62 16 3 Si 0.76 -4.60 29.87 68.60 2.05 -2.55 16 4 C -0.10 0.09 5.40 -19.69 -0.11 -0.02 16 5 C 0.10 0.00 9.84 84.82 0.83 0.84 16 6 N -0.46 -1.54 9.54 -184.90 -1.76 -3.30 16 7 C 0.06 0.35 6.75 41.91 0.28 0.63 16 8 C 0.57 4.56 7.81 86.88 0.68 5.24 16 9 O -0.56 -8.00 15.92 -3.78 -0.06 -8.06 16 10 N -0.68 -1.82 5.25 -442.60 -2.32 -4.15 16 11 C 0.11 0.14 4.32 45.52 0.20 0.34 16 12 H 0.09 0.40 7.46 -2.39 -0.02 0.39 16 13 C -0.12 0.30 7.29 31.12 0.23 0.53 16 14 C -0.07 0.09 3.86 -11.01 -0.04 0.05 16 15 H 0.10 -0.28 8.09 -2.39 -0.02 -0.30 16 16 C -0.08 -0.11 5.29 -19.87 -0.11 -0.21 16 17 C -0.13 -0.18 8.62 22.27 0.19 0.01 16 18 C -0.13 -0.23 10.05 22.27 0.22 0.00 16 19 C -0.14 -0.27 10.05 22.27 0.22 -0.04 16 20 C -0.13 -0.24 10.05 22.27 0.22 -0.02 16 21 C -0.13 -0.22 9.71 22.27 0.22 0.00 16 22 C -0.14 -0.07 7.25 31.12 0.23 0.16 16 23 C -0.12 -0.42 9.63 22.61 0.22 -0.20 16 24 C -0.05 0.00 9.84 22.45 0.22 0.22 16 25 H 0.40 -3.94 8.74 -74.06 -0.65 -4.58 16 26 H 0.11 -1.08 7.96 -2.39 -0.02 -1.10 16 27 H -0.28 0.46 7.11 99.48 0.71 1.17 16 28 H -0.29 -0.29 7.05 99.48 0.70 0.41 16 29 H 0.18 -0.87 4.88 -2.91 -0.01 -0.88 16 30 H 0.42 -0.19 8.03 -92.71 -0.74 -0.94 16 31 H 0.10 -0.33 7.73 -2.39 -0.02 -0.35 16 32 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.13 -0.20 6.64 -2.91 -0.02 -0.22 16 34 H 0.13 -0.21 8.06 -2.91 -0.02 -0.24 16 35 H 0.13 -0.18 8.06 -2.91 -0.02 -0.20 16 36 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 37 H 0.13 -0.20 8.05 -2.91 -0.02 -0.23 16 38 H 0.06 0.18 8.14 -2.39 -0.02 0.17 16 39 H 0.10 -0.05 6.30 -2.39 -0.02 -0.07 16 40 H 0.15 0.50 7.64 -2.91 -0.02 0.47 16 41 H 0.16 -0.66 8.06 -2.91 -0.02 -0.68 16 Total: 0.00 -18.12 346.19 -0.38 -18.51 By element: Atomic # 1 Polarization: -7.46 SS G_CDS: -0.28 Total: -7.74 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 3.91 Total: 8.12 kcal Atomic # 7 Polarization: -3.36 SS G_CDS: -4.09 Total: -7.45 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -1.97 Total: -8.89 kcal Atomic # 14 Polarization: -4.60 SS G_CDS: 2.05 Total: -2.55 kcal Total: -18.12 -0.38 -18.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_13287726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.983 kcal (2) G-P(sol) polarization free energy of solvation -18.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds