Wall clock time and date at job start Tue Mar 9 2021 13:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86298 * 109.47725 * 2 1 4 4 C 1.50705 * 109.47171 * 240.00020 * 2 1 3 5 5 C 1.38056 * 119.80193 * 299.72826 * 4 2 1 6 6 C 1.38713 * 120.08095 * 179.76377 * 5 4 2 7 7 O 1.35656 * 120.14924 * 180.27359 * 6 5 4 8 8 C 1.40132 * 119.70112 * 0.50541 * 6 5 4 9 9 C 1.47533 * 120.19307 * 179.76766 * 8 6 5 10 10 O 1.21592 * 119.99987 * 359.97438 * 9 8 6 11 11 N 1.34780 * 119.99933 * 179.97438 * 9 8 6 12 12 C 1.46498 * 119.99521 * 180.02562 * 11 9 8 13 13 H 1.08998 * 112.85724 * 23.80787 * 12 11 9 14 14 C 1.53785 * 113.61383 * 155.00386 * 12 11 9 15 15 C 1.53783 * 87.08079 * 89.11588 * 14 12 11 16 16 H 1.08998 * 113.61067 * 270.88374 * 15 14 12 17 17 C 1.50698 * 113.61436 * 139.98509 * 15 14 12 18 18 C 1.38233 * 119.99897 * 299.72943 * 17 15 14 19 19 C 1.38240 * 119.99973 * 179.76666 * 18 17 15 20 20 C 1.38232 * 119.99707 * 0.47903 * 19 18 17 21 21 C 1.38236 * 120.00406 * 359.79792 * 20 19 18 22 22 C 1.38237 * 119.99828 * 359.94678 * 21 20 19 23 23 C 1.53775 * 87.08121 * 25.43378 * 15 14 12 24 24 C 1.39708 * 119.61805 * 359.74767 * 8 6 5 25 25 C 1.37795 * 119.90355 * 0.02562 * 24 8 6 26 26 H 0.96709 * 113.99337 * 300.00145 * 1 2 3 27 27 H 1.09004 * 109.47533 * 120.00158 * 2 1 3 28 28 H 1.48506 * 109.99834 * 300.00610 * 3 2 1 29 29 H 1.48502 * 110.00011 * 61.31874 * 3 2 1 30 30 H 1.07997 * 119.95926 * 0.02562 * 5 4 2 31 31 H 0.96702 * 113.99797 * 270.23780 * 7 6 5 32 32 H 0.96993 * 120.00174 * 0.02562 * 11 9 8 33 33 H 1.08997 * 113.61675 * 203.66326 * 14 12 11 34 34 H 1.09006 * 113.61062 * 334.48446 * 14 12 11 35 35 H 1.07997 * 119.99929 * 359.97438 * 18 17 15 36 36 H 1.07999 * 120.00131 * 180.24634 * 19 18 17 37 37 H 1.08007 * 119.99722 * 179.76674 * 20 19 18 38 38 H 1.07993 * 120.00266 * 179.97438 * 21 20 19 39 39 H 1.07997 * 120.00198 * 180.02562 * 22 21 20 40 40 H 1.09002 * 113.61503 * 220.01674 * 23 15 14 41 41 H 1.09003 * 113.61558 * 89.11627 * 23 15 14 42 42 H 1.07996 * 120.04921 * 180.02562 * 24 8 6 43 43 H 1.08005 * 119.84616 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.5999 -2.0338 -1.4421 6 6 2.0551 -2.6919 -2.5751 7 8 1.7257 -3.9907 -2.7872 8 6 2.8607 -2.0105 -3.4973 9 6 3.3550 -2.7014 -4.7035 10 8 3.0640 -3.8656 -4.8995 11 7 4.1292 -2.0422 -5.5881 12 6 4.6196 -2.7282 -6.7861 13 1 3.9982 -3.5768 -7.0722 14 6 4.9397 -1.7782 -7.9523 15 6 6.3586 -1.6680 -7.3697 16 1 6.4692 -0.8677 -6.6380 17 6 7.4422 -1.6589 -8.4171 18 6 7.5870 -2.7362 -9.2710 19 6 8.5779 -2.7258 -10.2349 20 6 9.4302 -1.6424 -10.3383 21 6 9.2890 -0.5676 -9.4806 22 6 8.2948 -0.5757 -8.5201 23 6 6.1225 -3.0507 -6.7396 24 6 3.1928 -0.6730 -3.2681 25 6 2.7279 -0.0334 -2.1395 26 1 -0.3932 0.4418 0.7651 27 1 1.7924 -0.5139 0.8900 28 1 1.5615 2.4679 -1.2085 29 1 1.5881 2.4585 1.2242 30 1 0.9821 -2.5561 -0.7267 31 1 2.3515 -4.6223 -2.4069 32 1 4.3617 -1.1136 -5.4316 33 1 4.9052 -2.2595 -8.9297 34 1 4.3794 -0.8437 -7.9206 35 1 6.9239 -3.5845 -9.1874 36 1 8.6885 -3.5658 -10.9047 37 1 10.2067 -1.6360 -11.0889 38 1 9.9551 0.2786 -9.5610 39 1 8.1842 0.2642 -7.8503 40 1 6.5182 -3.1429 -5.7281 41 1 6.4113 -3.8799 -7.3854 42 1 3.8128 -0.1410 -3.9744 43 1 2.9849 1.0007 -1.9635 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705150_13422076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:46:57 Heat of formation + Delta-G solvation = -21.249992 kcal Electronic energy + Delta-G solvation = -26342.019878 eV Core-core repulsion = 22512.856843 eV Total energy + Delta-G solvation = -3829.163034 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.86139 -41.03153 -39.84174 -38.73046 -38.26600 -37.30573 -34.72679 -32.87379 -31.81386 -31.39966 -31.11469 -27.69238 -26.69247 -25.99294 -23.86293 -23.79085 -23.31520 -22.38925 -21.70701 -20.15382 -19.30856 -18.77447 -18.55357 -17.93571 -17.51280 -16.73067 -16.71609 -16.33170 -16.12106 -15.92801 -15.89437 -15.61561 -15.31486 -14.95548 -14.79571 -14.39157 -14.22070 -14.05950 -14.00544 -13.95911 -13.48697 -13.35683 -13.08825 -13.03009 -12.71547 -12.43978 -12.18448 -12.11263 -11.71836 -11.67211 -11.64032 -11.15033 -10.92921 -10.61131 -10.20590 -9.98460 -9.79145 -9.76672 -9.52207 -4.91134 -0.41861 0.15246 0.46009 0.53119 1.27399 1.63460 1.69451 1.97992 2.00293 2.55013 2.86370 3.08998 3.30329 3.47903 3.56545 3.70093 3.73747 3.76867 3.80092 3.96741 4.08611 4.10911 4.18234 4.26192 4.28724 4.32746 4.34117 4.58207 4.61550 4.65785 4.70620 4.76641 4.78326 4.84858 4.98917 5.01887 5.02670 5.11996 5.16522 5.18031 5.21590 5.26415 5.54115 5.59542 5.62081 5.67439 5.77858 6.15749 6.46689 6.54864 6.71854 7.16074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.098 4.098 3 Si 0.779 3.221 4 C -0.036 4.036 5 C -0.141 4.141 6 C 0.152 3.848 7 O -0.498 6.498 8 C -0.181 4.181 9 C 0.559 3.441 10 O -0.563 6.563 11 N -0.694 5.694 12 C 0.116 3.884 13 H 0.082 0.918 14 C -0.126 4.126 15 C -0.063 4.063 16 H 0.115 0.885 17 C -0.079 4.079 18 C -0.129 4.129 19 C -0.132 4.132 20 C -0.139 4.139 21 C -0.131 4.131 22 C -0.126 4.126 23 C -0.141 4.141 24 C -0.052 4.052 25 C -0.133 4.133 26 H 0.397 0.603 27 H 0.101 0.899 28 H -0.291 1.291 29 H -0.290 1.290 30 H 0.135 0.865 31 H 0.408 0.592 32 H 0.415 0.585 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.171 0.829 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.761 5.801 2.707 8.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.206 4.206 3 Si 0.683 3.317 4 C -0.036 4.036 5 C -0.160 4.160 6 C 0.106 3.894 7 O -0.311 6.311 8 C -0.184 4.184 9 C 0.347 3.653 10 O -0.442 6.442 11 N -0.347 5.347 12 C 0.010 3.990 13 H 0.101 0.899 14 C -0.164 4.164 15 C -0.081 4.081 16 H 0.133 0.867 17 C -0.079 4.079 18 C -0.147 4.147 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.144 4.144 23 C -0.179 4.179 24 C -0.070 4.070 25 C -0.150 4.150 26 H 0.248 0.752 27 H 0.119 0.881 28 H -0.219 1.219 29 H -0.217 1.217 30 H 0.152 0.848 31 H 0.268 0.732 32 H 0.253 0.747 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.156 0.844 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.188 0.812 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.966 5.698 1.716 7.751 hybrid contribution -0.882 -0.443 0.731 1.228 sum 4.084 5.255 2.448 7.091 Atomic orbital electron populations 1.86554 1.18407 1.80891 1.51181 1.25250 0.84314 1.12758 0.98274 0.94105 0.89847 0.71046 0.76721 1.19635 0.95513 0.92972 0.95501 1.21342 1.01733 0.95685 0.97243 1.18743 0.92826 0.85723 0.92088 1.84725 1.52607 1.13364 1.80412 1.20420 1.03812 0.96835 0.97365 1.18290 0.77859 0.85960 0.83145 1.90809 1.58626 1.18048 1.76750 1.45433 1.51144 1.16002 1.22141 1.21842 0.95223 0.96543 0.85392 0.89947 1.23375 0.95172 1.00280 0.97582 1.21587 0.92138 0.98598 0.95809 0.86694 1.19877 0.96804 0.94322 0.96892 1.21229 0.98854 0.98801 0.95788 1.21414 0.95783 0.98998 0.98804 1.21442 0.99940 0.94331 0.99971 1.21451 0.98692 0.98980 0.95732 1.21346 0.95303 0.98654 0.99069 1.23535 0.95038 0.97580 1.01776 1.21480 0.96951 0.91440 0.97150 1.21190 0.99003 1.00979 0.93843 0.75185 0.88126 1.21867 1.21693 0.84755 0.73241 0.74651 0.88487 0.89335 0.85282 0.85147 0.85141 0.84777 0.84420 0.91132 0.88799 0.81154 0.82087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.55 12.74 -148.98 -1.90 -2.45 16 2 C -0.10 0.30 2.80 71.24 0.20 0.50 16 3 Si 0.78 -4.43 29.77 68.60 2.04 -2.39 16 4 C -0.04 0.00 5.43 -19.83 -0.11 -0.11 16 5 C -0.14 -0.54 9.53 22.34 0.21 -0.33 16 6 C 0.15 0.98 6.72 22.84 0.15 1.13 16 7 O -0.50 -4.50 11.58 -68.79 -0.80 -5.30 16 8 C -0.18 -0.61 5.89 -20.01 -0.12 -0.72 16 9 C 0.56 3.46 7.76 86.69 0.67 4.14 16 10 O -0.56 -8.41 14.76 16.91 0.25 -8.16 16 11 N -0.69 0.91 5.21 -443.19 -2.31 -1.40 16 12 C 0.12 -0.05 4.32 45.52 0.20 0.15 16 13 H 0.08 0.40 7.46 -2.39 -0.02 0.39 16 14 C -0.13 0.53 7.29 31.12 0.23 0.75 16 15 C -0.06 0.28 3.86 -11.02 -0.04 0.24 16 16 H 0.12 -0.91 8.10 -2.39 -0.02 -0.93 16 17 C -0.08 0.05 5.29 -19.87 -0.11 -0.05 16 18 C -0.13 -0.07 8.63 22.27 0.19 0.12 16 19 C -0.13 -0.16 10.05 22.27 0.22 0.07 16 20 C -0.14 -0.14 10.05 22.27 0.22 0.08 16 21 C -0.13 -0.03 10.05 22.27 0.22 0.20 16 22 C -0.13 0.09 9.71 22.27 0.22 0.31 16 23 C -0.14 0.26 7.25 31.12 0.23 0.49 16 24 C -0.05 0.20 9.54 22.52 0.21 0.42 16 25 C -0.13 0.51 8.64 22.24 0.19 0.70 16 26 H 0.40 -2.83 8.74 -74.05 -0.65 -3.47 16 27 H 0.10 -0.70 7.96 -2.38 -0.02 -0.72 16 28 H -0.29 -0.25 7.11 99.48 0.71 0.45 16 29 H -0.29 0.20 7.11 99.48 0.71 0.90 16 30 H 0.13 0.50 8.06 -2.91 -0.02 0.47 16 31 H 0.41 0.58 9.06 -74.06 -0.67 -0.09 16 32 H 0.41 -3.42 6.73 -92.71 -0.62 -4.05 16 33 H 0.10 -0.33 7.73 -2.39 -0.02 -0.35 16 34 H 0.09 -0.54 8.14 -2.38 -0.02 -0.56 16 35 H 0.13 -0.22 6.64 -2.91 -0.02 -0.24 16 36 H 0.13 -0.22 8.06 -2.91 -0.02 -0.24 16 37 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 38 H 0.13 -0.43 8.06 -2.91 -0.02 -0.46 16 39 H 0.14 -0.68 8.06 -2.91 -0.02 -0.71 16 40 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.09 -0.14 6.30 -2.39 -0.02 -0.15 16 42 H 0.17 -2.07 6.40 -2.91 -0.02 -2.08 16 43 H 0.16 -1.51 4.85 -2.91 -0.01 -1.52 16 Total: 0.00 -24.81 357.62 -0.54 -25.34 By element: Atomic # 1 Polarization: -12.88 SS G_CDS: -0.83 Total: -13.71 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 3.00 Total: 8.06 kcal Atomic # 7 Polarization: 0.91 SS G_CDS: -2.31 Total: -1.40 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -2.44 Total: -15.90 kcal Atomic # 14 Polarization: -4.43 SS G_CDS: 2.04 Total: -2.39 kcal Total: -24.81 -0.54 -25.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_13422076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.093 kcal (2) G-P(sol) polarization free energy of solvation -24.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds