Wall clock time and date at job start Tue Mar 9 2021 13:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86299 * 109.46805 * 2 1 4 4 C 1.50691 * 109.47788 * 239.99728 * 2 1 3 5 5 C 1.32697 * 124.68462 * 299.99958 * 4 2 1 6 6 C 1.44504 * 113.10301 * 179.97438 * 5 4 2 7 7 C 1.47043 * 123.49527 * 179.97438 * 6 5 4 8 8 O 1.21656 * 119.99873 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00024 * 0.02562 * 7 6 5 10 10 C 1.46497 * 120.00126 * 180.02562 * 9 7 6 11 11 H 1.09002 * 112.84935 * 25.32833 * 10 9 7 12 12 C 1.53786 * 113.61643 * 156.52505 * 10 9 7 13 13 C 1.53782 * 87.07909 * 89.19525 * 12 10 9 14 14 H 1.08997 * 113.61784 * 270.88529 * 13 12 10 15 15 C 1.50707 * 113.61258 * 140.06349 * 13 12 10 16 16 C 1.38236 * 119.99820 * 299.73105 * 15 13 12 17 17 C 1.38239 * 119.99449 * 179.74032 * 16 15 13 18 18 C 1.38236 * 120.00170 * 0.53156 * 17 16 15 19 19 C 1.38226 * 119.99769 * 359.74546 * 18 17 16 20 20 C 1.38233 * 120.00557 * 359.97438 * 19 18 17 21 21 C 1.53781 * 113.61305 * 254.13352 * 10 9 7 22 22 C 1.36224 * 113.01215 * 0.23344 * 6 5 4 23 23 Cl 1.73598 * 124.60422 * 179.76593 * 22 6 5 24 24 S 1.70444 * 110.79078 * 359.64583 * 22 6 5 25 25 H 0.96703 * 113.99795 * 60.00656 * 1 2 3 26 26 H 1.09005 * 109.46929 * 119.99249 * 2 1 3 27 27 H 1.48495 * 110.00782 * 59.99446 * 3 2 1 28 28 H 1.48509 * 110.00241 * 181.31882 * 3 2 1 29 29 H 1.08004 * 123.44944 * 0.02562 * 5 4 2 30 30 H 0.97006 * 119.99816 * 359.97438 * 9 7 6 31 31 H 1.08993 * 113.61491 * 203.74894 * 12 10 9 32 32 H 1.09000 * 113.61395 * 334.56747 * 12 10 9 33 33 H 1.07998 * 120.00518 * 0.02562 * 16 15 13 34 34 H 1.08004 * 119.99471 * 180.29744 * 17 16 15 35 35 H 1.07996 * 119.99868 * 179.76818 * 18 17 16 36 36 H 1.08003 * 119.99910 * 180.02562 * 19 18 17 37 37 H 1.07996 * 120.00484 * 180.02562 * 20 19 18 38 38 H 1.09001 * 113.61695 * 25.34675 * 21 10 9 39 39 H 1.08997 * 113.61223 * 156.25258 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9315 -0.7104 -1.2303 5 6 1.6689 -1.9757 -1.5318 6 6 2.2772 -2.4011 -2.7716 7 6 2.1353 -3.7574 -3.3217 8 8 2.6761 -4.0474 -4.3722 9 7 1.4061 -4.6792 -2.6622 10 6 1.2651 -6.0305 -3.2099 11 1 2.0920 -6.3113 -3.8622 12 6 0.9285 -7.0928 -2.1501 13 6 -0.5525 -6.7752 -2.4158 14 1 -0.9460 -5.9731 -1.7914 15 6 -1.4384 -7.9943 -2.4294 16 6 -1.2125 -9.0026 -3.3477 17 6 -2.0218 -10.1233 -3.3567 18 6 -3.0637 -10.2307 -2.4546 19 6 -3.2930 -9.2199 -1.5401 20 6 -2.4803 -8.1018 -1.5273 21 6 -0.1202 -6.3075 -3.8175 22 6 3.0004 -1.4170 -3.3752 23 17 3.8599 -1.6020 -4.8721 24 16 2.9442 0.0215 -2.4626 25 1 -0.3933 0.4416 -0.7651 26 1 1.7923 -0.5137 0.8901 27 1 1.5614 2.4681 1.2083 28 1 3.5346 1.7705 -0.0321 29 1 1.0620 -2.6212 -0.9143 30 1 0.9752 -4.4480 -1.8244 31 1 1.2168 -8.1037 -2.4382 32 1 1.2598 -6.8281 -1.1460 33 1 -0.4009 -8.9169 -4.0551 34 1 -1.8423 -10.9133 -4.0710 35 1 -3.6982 -11.1046 -2.4640 36 1 -4.1068 -9.3039 -0.8350 37 1 -2.6592 -7.3122 -0.8126 38 1 -0.6355 -5.4092 -4.1573 39 1 -0.1190 -7.1034 -4.5623 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9705150_13431040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:47:17 Heat of formation + Delta-G solvation = 17.425632 kcal Electronic energy + Delta-G solvation = -24872.562250 eV Core-core repulsion = 21093.110963 eV Total energy + Delta-G solvation = -3779.451288 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.053 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.63327 -40.49402 -39.20035 -38.57954 -37.84830 -36.98837 -34.48962 -31.94893 -31.77442 -31.46094 -27.15170 -26.78227 -26.72639 -25.22339 -23.52393 -22.45571 -22.27700 -20.85493 -20.13343 -19.46075 -18.17993 -17.99367 -17.69363 -16.96539 -16.57006 -16.28012 -16.16747 -15.92465 -15.77144 -15.63100 -15.10170 -14.88317 -14.58063 -14.44744 -14.32797 -14.18851 -14.11714 -14.03358 -13.51678 -13.07635 -13.03406 -12.74869 -12.55022 -12.43270 -12.21015 -12.07694 -11.94449 -11.76819 -11.73087 -11.20429 -10.87742 -10.69248 -10.11928 -9.92611 -9.80896 -9.70869 -9.54972 -5.31575 -0.61993 -0.23081 0.40786 0.43713 0.51008 0.66802 1.01950 1.07576 1.42638 1.75544 2.11570 2.24969 2.83772 3.11894 3.37329 3.40162 3.64147 3.67841 3.79359 3.84081 3.89022 4.01206 4.11618 4.19027 4.20392 4.25212 4.33510 4.54621 4.59366 4.65031 4.66035 4.68903 4.79912 4.87137 4.92543 4.97441 5.09124 5.11647 5.15829 5.52924 5.58959 5.64891 5.73535 6.10945 6.29478 6.43441 7.19695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.024 4.024 3 Si 0.649 3.351 4 C -0.236 4.236 5 C -0.071 4.071 6 C -0.160 4.160 7 C 0.579 3.421 8 O -0.516 6.516 9 N -0.707 5.707 10 C 0.122 3.878 11 H 0.106 0.894 12 C -0.135 4.135 13 C -0.073 4.073 14 H 0.096 0.904 15 C -0.072 4.072 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.124 4.124 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.143 4.143 22 C -0.114 4.114 23 Cl 0.027 6.973 24 S 0.238 5.762 25 H 0.383 0.617 26 H 0.128 0.872 27 H -0.228 1.228 28 H -0.233 1.233 29 H 0.157 0.843 30 H 0.400 0.600 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.075 0.925 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.318 2.055 2.399 3.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.138 4.138 3 Si 0.548 3.452 4 C -0.353 4.353 5 C -0.100 4.100 6 C -0.178 4.178 7 C 0.364 3.636 8 O -0.392 6.392 9 N -0.359 5.359 10 C 0.016 3.984 11 H 0.124 0.876 12 C -0.173 4.173 13 C -0.092 4.092 14 H 0.115 0.885 15 C -0.072 4.072 16 C -0.135 4.135 17 C -0.136 4.136 18 C -0.142 4.142 19 C -0.136 4.136 20 C -0.135 4.135 21 C -0.182 4.182 22 C -0.261 4.261 23 Cl 0.057 6.943 24 S 0.502 5.498 25 H 0.231 0.769 26 H 0.145 0.855 27 H -0.151 1.151 28 H -0.157 1.157 29 H 0.174 0.826 30 H 0.235 0.765 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.094 0.906 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.633 3.560 2.280 4.274 hybrid contribution -0.805 -2.048 0.567 2.273 sum -1.438 1.511 2.847 3.529 Atomic orbital electron populations 1.86537 1.16317 1.81647 1.49288 1.24428 0.85378 1.09146 0.94830 0.95052 0.82407 0.77422 0.90304 1.24805 1.07995 0.99277 1.03240 1.20991 0.99323 0.95034 0.94629 1.20210 1.04575 0.95495 0.97556 1.17385 0.78626 0.83463 0.84124 1.90883 1.46529 1.79911 1.21832 1.45487 1.52882 1.11185 1.26310 1.21853 0.98727 0.81336 0.96472 0.87559 1.23417 0.94714 0.99581 0.99576 1.21624 0.93837 0.95359 0.98357 0.88547 1.19684 0.96043 0.95544 0.95914 1.21026 0.99916 0.93769 0.98793 1.21185 0.95515 0.97910 0.98945 1.21198 0.98056 0.99056 0.95927 1.21183 0.99486 0.94084 0.98876 1.21070 0.95291 0.98233 0.98896 1.23593 0.96197 1.02156 0.96221 1.25531 1.02798 1.00906 0.96855 1.98444 1.72912 1.97035 1.25959 1.83340 1.46745 1.08472 1.11217 0.76943 0.85499 1.15092 1.15738 0.82573 0.76452 0.88266 0.90498 0.85945 0.86002 0.86093 0.86046 0.86175 0.90640 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 1.20 12.85 -35.23 -0.45 0.74 16 2 C -0.02 0.06 2.94 36.00 0.11 0.17 16 3 Si 0.65 -1.74 30.91 -169.99 -5.25 -6.99 16 4 C -0.24 0.42 5.68 -36.20 -0.21 0.21 16 5 C -0.07 0.09 9.71 -39.00 -0.38 -0.29 16 6 C -0.16 -0.19 5.98 -104.59 -0.63 -0.81 16 7 C 0.58 1.47 7.79 -12.69 -0.10 1.37 16 8 O -0.52 -3.07 14.53 5.23 0.08 -3.00 16 9 N -0.71 0.26 5.24 -54.21 -0.28 -0.02 16 10 C 0.12 -0.04 4.30 -67.12 -0.29 -0.33 16 11 H 0.11 0.14 7.50 -51.93 -0.39 -0.25 16 12 C -0.13 0.22 7.29 -25.92 -0.19 0.04 16 13 C -0.07 0.10 3.86 -90.86 -0.35 -0.26 16 14 H 0.10 -0.20 8.09 -51.93 -0.42 -0.62 16 15 C -0.07 -0.02 5.29 -104.62 -0.55 -0.58 16 16 C -0.12 -0.05 8.63 -39.58 -0.34 -0.39 16 17 C -0.12 -0.07 10.05 -39.58 -0.40 -0.47 16 18 C -0.12 -0.09 10.05 -39.59 -0.40 -0.49 16 19 C -0.12 -0.08 10.05 -39.59 -0.40 -0.47 16 20 C -0.12 -0.06 9.71 -39.58 -0.38 -0.44 16 21 C -0.14 0.09 7.27 -25.82 -0.19 -0.10 16 22 C -0.11 -0.18 6.87 30.01 0.21 0.03 16 23 Cl 0.03 0.09 27.20 -51.86 -1.41 -1.33 16 24 S 0.24 -0.27 20.17 -107.50 -2.17 -2.44 16 25 H 0.38 -2.22 8.70 45.56 0.40 -1.82 16 26 H 0.13 -0.34 7.96 -51.93 -0.41 -0.75 16 27 H -0.23 -0.02 7.11 56.52 0.40 0.38 16 28 H -0.23 0.15 7.11 56.52 0.40 0.55 16 29 H 0.16 -0.51 7.10 -52.48 -0.37 -0.89 16 30 H 0.40 -1.11 7.25 -40.82 -0.30 -1.40 16 31 H 0.10 -0.16 7.73 -51.93 -0.40 -0.56 16 32 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16 33 H 0.12 -0.11 6.66 -52.49 -0.35 -0.46 16 34 H 0.12 -0.11 8.06 -52.48 -0.42 -0.54 16 35 H 0.12 -0.10 8.06 -52.49 -0.42 -0.52 16 36 H 0.12 -0.11 8.06 -52.48 -0.42 -0.54 16 37 H 0.12 -0.12 8.05 -52.49 -0.42 -0.55 16 38 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 39 H 0.10 -0.08 6.32 -51.93 -0.33 -0.40 16 LS Contribution 356.40 15.07 5.37 5.37 Total: 0.00 -6.94 356.40 -12.92 -19.85 By element: Atomic # 1 Polarization: -5.07 SS G_CDS: -4.31 Total: -9.38 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -4.49 Total: -2.82 kcal Atomic # 7 Polarization: 0.26 SS G_CDS: -0.28 Total: -0.02 kcal Atomic # 8 Polarization: -1.87 SS G_CDS: -0.38 Total: -2.25 kcal Atomic # 14 Polarization: -1.74 SS G_CDS: -5.25 Total: -6.99 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -2.17 Total: -2.44 kcal Atomic # 17 Polarization: 0.09 SS G_CDS: -1.41 Total: -1.33 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -6.94 -12.92 -19.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_13431040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.280 kcal (2) G-P(sol) polarization free energy of solvation -6.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds