Wall clock time and date at job start Tue Mar 9 2021 13:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86304 * 109.47134 * 2 1 4 4 C 1.50702 * 109.47034 * 240.00175 * 2 1 3 5 5 C 1.38238 * 119.97400 * 120.02003 * 4 2 1 6 6 C 1.38285 * 120.11615 * 179.97438 * 5 4 2 7 7 C 1.38127 * 120.05040 * 359.68366 * 6 5 4 8 8 C 1.38759 * 119.94263 * 0.59072 * 7 6 5 9 9 O 1.35898 * 120.05292 * 179.70363 * 8 7 6 10 10 C 1.42903 * 117.00500 * 359.72614 * 9 8 7 11 11 C 1.52992 * 109.47388 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47147 * 180.02562 * 11 10 9 13 13 O 1.21276 * 119.99967 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99949 * 179.97438 * 12 11 10 15 15 C 1.46504 * 120.00067 * 179.97438 * 14 12 11 16 16 H 1.09001 * 112.84798 * 336.20397 * 15 14 12 17 17 C 1.53948 * 113.53259 * 107.50857 * 15 14 12 18 18 C 1.53779 * 87.02011 * 89.19134 * 17 15 14 19 19 H 1.08999 * 113.61380 * 270.76850 * 18 17 15 20 20 C 1.50706 * 113.61233 * 139.94991 * 18 17 15 21 21 C 1.38238 * 119.99727 * 140.86603 * 20 18 17 22 22 C 1.38234 * 119.99693 * 180.02562 * 21 20 18 23 23 C 1.38234 * 120.00240 * 359.97438 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.26327 * 23 22 21 25 25 C 1.38234 * 120.00207 * 320.88094 * 20 18 17 26 26 C 1.53775 * 113.61516 * 205.00286 * 15 14 12 27 27 C 1.38166 * 119.96988 * 299.99805 * 4 2 1 28 28 H 0.96702 * 114.00371 * 59.99415 * 1 2 3 29 29 H 1.08994 * 109.47452 * 119.99842 * 2 1 3 30 30 H 1.48499 * 109.99980 * 298.68218 * 3 2 1 31 31 H 1.48494 * 110.00249 * 59.99870 * 3 2 1 32 32 H 1.08005 * 119.94594 * 359.97438 * 5 4 2 33 33 H 1.07993 * 119.97932 * 179.97438 * 6 5 4 34 34 H 1.07998 * 120.03094 * 180.32136 * 7 6 5 35 35 H 1.08998 * 109.46548 * 59.99789 * 10 9 8 36 36 H 1.09000 * 109.47007 * 300.00202 * 10 9 8 37 37 H 1.09000 * 109.47206 * 59.99980 * 11 10 9 38 38 H 1.09000 * 109.46983 * 299.99937 * 11 10 9 39 39 H 0.97000 * 119.99911 * 0.02562 * 14 12 11 40 40 H 1.09000 * 113.67195 * 334.65985 * 17 15 14 41 41 H 1.09001 * 113.61348 * 203.71044 * 17 15 14 42 42 H 1.07997 * 119.99846 * 359.97438 * 21 20 18 43 43 H 1.07999 * 119.99751 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.99744 * 179.97438 * 23 22 21 45 45 H 1.07998 * 120.00391 * 179.72199 * 24 23 22 46 46 H 1.07999 * 120.00008 * 0.02562 * 25 20 18 47 47 H 1.09004 * 113.61623 * 156.33648 * 26 15 14 48 48 H 1.09000 * 113.61403 * 25.44000 * 26 15 14 49 49 H 1.08002 * 120.02757 * 0.04726 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7264 -0.0381 -2.1399 6 6 3.1893 -0.6873 -3.2697 7 6 2.8636 -2.0116 -3.4889 8 6 2.0610 -2.6869 -2.5805 9 8 1.7341 -3.9881 -2.7971 10 6 2.2467 -4.5971 -3.9839 11 6 1.7761 -6.0510 -4.0553 12 6 2.3173 -6.6934 -5.3065 13 8 3.0114 -6.0515 -6.0661 14 7 2.0306 -7.9814 -5.5809 15 6 2.5562 -8.6057 -6.7976 16 1 2.7933 -7.8811 -7.5766 17 6 3.6833 -9.6198 -6.5305 18 6 2.5832 -10.6858 -6.3964 19 1 2.1987 -10.7912 -5.3819 20 6 2.9428 -12.0069 -7.0262 21 6 2.5877 -13.1889 -6.4034 22 6 2.9180 -14.4006 -6.9808 23 6 3.6029 -14.4305 -8.1812 24 6 3.9623 -13.2486 -8.8015 25 6 3.6279 -12.0368 -8.2264 26 6 1.7130 -9.7915 -7.2952 27 6 1.5972 -2.0332 -1.4485 28 1 -0.3934 0.4418 -0.7650 29 1 1.7924 -0.5138 0.8899 30 1 1.5879 2.4586 -1.2242 31 1 1.5615 2.4680 1.2084 32 1 2.9864 0.9959 -1.9677 33 1 3.8100 -0.1599 -3.9789 34 1 3.2296 -2.5197 -4.3688 35 1 3.3362 -4.5678 -3.9657 36 1 1.8833 -4.0546 -4.8567 37 1 0.6866 -6.0798 -4.0736 38 1 2.1393 -6.5937 -3.1825 39 1 1.4757 -8.4949 -4.9732 40 1 4.2277 -9.4352 -5.6044 41 1 4.3413 -9.7765 -7.3853 42 1 2.0530 -13.1655 -5.4654 43 1 2.6410 -15.3241 -6.4941 44 1 3.8613 -15.3773 -8.6321 45 1 4.5013 -13.2718 -9.7371 46 1 3.9059 -11.1133 -8.7126 47 1 1.8312 -9.9953 -8.3594 48 1 0.6690 -9.7452 -6.9855 49 1 0.9756 -2.5578 -0.7380 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705150_4549614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:48:06 Heat of formation + Delta-G solvation = -24.032705 kcal Electronic energy + Delta-G solvation = -28978.762841 eV Core-core repulsion = 24838.403902 eV Total energy + Delta-G solvation = -4140.358940 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.66972 -41.27029 -40.36183 -39.21938 -38.69053 -37.38783 -34.66774 -33.28020 -32.48611 -31.86910 -31.56337 -30.74647 -27.13659 -26.71588 -26.41545 -25.12200 -23.68541 -23.53447 -22.50696 -22.13881 -21.49973 -20.09887 -19.41548 -18.39080 -17.98011 -17.65408 -17.49837 -17.12007 -17.06582 -16.82992 -16.29318 -16.19003 -16.09767 -15.93358 -15.54366 -15.07173 -15.00615 -14.85701 -14.54556 -14.35468 -14.29755 -14.13290 -14.07323 -13.97404 -13.47608 -13.23625 -13.13423 -12.91986 -12.86275 -12.72631 -12.40527 -12.16450 -11.99978 -11.82636 -11.74188 -11.69737 -11.58365 -11.18109 -11.09483 -10.68149 -10.14504 -9.94345 -9.81558 -9.54972 -9.28284 -4.90111 0.18917 0.38507 0.43225 0.50137 1.29747 1.47863 1.62484 1.67521 1.96731 2.45662 2.65267 2.83551 3.40446 3.46302 3.53541 3.63184 3.67938 3.71994 3.83683 3.88157 3.93560 3.97240 4.05698 4.08967 4.15419 4.22937 4.24937 4.27452 4.31197 4.38886 4.55359 4.57303 4.61992 4.63044 4.66337 4.68859 4.75366 4.75824 4.84995 4.96766 4.97609 4.99925 5.13180 5.15193 5.18563 5.25301 5.37276 5.43141 5.52063 5.59277 5.64649 5.69505 5.74904 6.12890 6.31788 6.43676 6.46905 7.12993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.086 4.086 3 Si 0.775 3.225 4 C -0.082 4.082 5 C -0.157 4.157 6 C -0.076 4.076 7 C -0.211 4.211 8 C 0.116 3.884 9 O -0.324 6.324 10 C 0.074 3.926 11 C -0.133 4.133 12 C 0.523 3.477 13 O -0.582 6.582 14 N -0.698 5.698 15 C 0.116 3.884 16 H 0.086 0.914 17 C -0.142 4.142 18 C -0.066 4.066 19 H 0.111 0.889 20 C -0.079 4.079 21 C -0.128 4.128 22 C -0.131 4.131 23 C -0.139 4.139 24 C -0.131 4.131 25 C -0.128 4.128 26 C -0.125 4.125 27 C -0.141 4.141 28 H 0.386 0.614 29 H 0.126 0.874 30 H -0.282 1.282 31 H -0.302 1.302 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.136 0.864 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.419 0.581 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.654 -2.788 -0.223 2.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.195 4.195 3 Si 0.680 3.320 4 C -0.082 4.082 5 C -0.174 4.174 6 C -0.093 4.093 7 C -0.230 4.230 8 C 0.071 3.929 9 O -0.238 6.238 10 C -0.001 4.001 11 C -0.172 4.172 12 C 0.311 3.689 13 O -0.462 6.462 14 N -0.350 5.350 15 C 0.010 3.990 16 H 0.104 0.896 17 C -0.181 4.181 18 C -0.084 4.084 19 H 0.129 0.871 20 C -0.079 4.079 21 C -0.146 4.146 22 C -0.149 4.149 23 C -0.157 4.157 24 C -0.149 4.149 25 C -0.146 4.146 26 C -0.163 4.163 27 C -0.160 4.160 28 H 0.235 0.765 29 H 0.144 0.856 30 H -0.208 1.208 31 H -0.230 1.230 32 H 0.165 0.835 33 H 0.170 0.830 34 H 0.154 0.846 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.256 0.744 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.149 0.851 45 H 0.150 0.850 46 H 0.149 0.851 47 H 0.116 0.884 48 H 0.107 0.893 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.897 -1.977 -0.107 2.173 hybrid contribution -1.144 -0.671 -0.596 1.455 sum -0.248 -2.648 -0.704 2.751 Atomic orbital electron populations 1.86569 1.18455 1.80460 1.50142 1.25343 0.83514 1.12231 0.98373 0.93909 0.90316 0.71384 0.76413 1.20169 0.97661 0.93497 0.96900 1.21171 1.00265 1.00882 0.95097 1.21246 0.97654 0.93373 0.97060 1.21557 1.03067 0.97087 1.01254 1.19144 0.95255 0.83515 0.94953 1.85951 1.71392 1.22790 1.43706 1.22436 0.98987 0.93186 0.85528 1.21435 1.04931 0.93983 0.96862 1.20624 0.79368 0.81962 0.86986 1.90737 1.40069 1.63847 1.51525 1.45533 1.53054 1.11487 1.24902 1.21868 0.95524 0.94091 0.87484 0.89572 1.23566 0.96628 0.94896 1.02988 1.21600 0.97160 0.89842 0.99839 0.87076 1.19888 0.98012 0.94946 0.95073 1.21339 1.00508 0.92089 1.00667 1.21445 0.98647 0.98717 0.96069 1.21445 0.99090 0.98955 0.96170 1.21426 1.00123 0.92737 1.00625 1.21224 0.99073 0.98412 0.95879 1.23358 0.99413 0.92815 1.00736 1.20316 1.03782 0.94652 0.97217 0.76453 0.85643 1.20804 1.23030 0.83460 0.82970 0.84589 0.91576 0.91748 0.85539 0.85482 0.74365 0.91301 0.88843 0.84715 0.84869 0.85079 0.85000 0.85133 0.88445 0.89347 0.85428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.05 12.77 -148.98 -1.90 -3.96 16 2 C -0.09 -0.04 2.82 71.24 0.20 0.16 16 3 Si 0.77 -1.34 29.79 68.60 2.04 0.70 16 4 C -0.08 -0.16 5.39 -19.88 -0.11 -0.27 16 5 C -0.16 0.02 8.67 22.28 0.19 0.22 16 6 C -0.08 -0.02 10.04 22.25 0.22 0.20 16 7 C -0.21 -0.66 9.04 22.37 0.20 -0.46 16 8 C 0.12 0.62 6.69 22.51 0.15 0.77 16 9 O -0.32 -1.47 10.14 -92.40 -0.94 -2.40 16 10 C 0.07 0.09 4.03 71.98 0.29 0.38 16 11 C -0.13 0.55 6.07 29.85 0.18 0.73 16 12 C 0.52 0.21 7.83 87.66 0.69 0.90 16 13 O -0.58 -5.55 15.58 -3.02 -0.05 -5.59 16 14 N -0.70 3.17 5.26 -439.77 -2.31 0.86 16 15 C 0.12 -0.29 4.33 45.57 0.20 -0.09 16 16 H 0.09 0.18 7.47 -2.39 -0.02 0.16 16 17 C -0.14 0.38 7.27 31.18 0.23 0.60 16 18 C -0.07 0.30 3.85 -11.01 -0.04 0.26 16 19 H 0.11 -0.82 8.09 -2.39 -0.02 -0.84 16 20 C -0.08 0.05 5.29 -19.86 -0.11 -0.06 16 21 C -0.13 0.03 9.71 22.27 0.22 0.24 16 22 C -0.13 -0.07 10.05 22.27 0.22 0.15 16 23 C -0.14 -0.15 10.05 22.27 0.22 0.08 16 24 C -0.13 -0.12 10.05 22.27 0.22 0.10 16 25 C -0.13 -0.03 8.54 22.27 0.19 0.16 16 26 C -0.13 0.67 7.29 31.12 0.23 0.89 16 27 C -0.14 -0.70 9.55 22.36 0.21 -0.48 16 28 H 0.39 -0.70 8.70 -74.06 -0.64 -1.35 16 29 H 0.13 -0.12 7.96 -2.39 -0.02 -0.14 16 30 H -0.28 -0.53 7.11 99.48 0.71 0.18 16 31 H -0.30 -1.77 7.11 99.48 0.71 -1.06 16 32 H 0.15 -0.69 4.87 -2.91 -0.01 -0.70 16 33 H 0.15 -0.70 8.06 -2.91 -0.02 -0.72 16 34 H 0.14 0.23 6.30 -2.91 -0.02 0.21 16 35 H 0.07 0.16 7.61 -2.39 -0.02 0.14 16 36 H 0.06 0.17 7.63 -2.39 -0.02 0.15 16 37 H 0.13 -0.97 8.14 -2.39 -0.02 -0.99 16 38 H 0.13 -0.99 8.14 -2.39 -0.02 -1.01 16 39 H 0.42 -4.45 8.70 -92.71 -0.81 -5.26 16 40 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 41 H 0.09 -0.20 6.39 -2.39 -0.02 -0.22 16 42 H 0.13 -0.53 8.05 -2.91 -0.02 -0.56 16 43 H 0.13 -0.36 8.06 -2.91 -0.02 -0.39 16 44 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 45 H 0.13 -0.28 8.06 -2.91 -0.02 -0.30 16 46 H 0.13 -0.31 6.73 -2.91 -0.02 -0.33 16 47 H 0.10 -0.45 7.64 -2.39 -0.02 -0.47 16 48 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 49 H 0.13 0.68 8.06 -2.91 -0.02 0.66 16 Total: 0.00 -19.98 403.28 0.23 -19.75 By element: Atomic # 1 Polarization: -13.44 SS G_CDS: -0.43 Total: -13.87 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 3.81 Total: 4.51 kcal Atomic # 7 Polarization: 3.17 SS G_CDS: -2.31 Total: 0.86 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -2.89 Total: -11.96 kcal Atomic # 14 Polarization: -1.34 SS G_CDS: 2.04 Total: 0.70 kcal Total: -19.98 0.23 -19.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705150_4549614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.278 kcal (2) G-P(sol) polarization free energy of solvation -19.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds