Wall clock time and date at job start Tue Mar 9 2021 12:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42906 * 109.46882 * 2 1 4 4 C 1.35907 * 116.99470 * 275.06348 * 3 2 1 5 5 C 1.38729 * 120.05917 * 5.46768 * 4 3 2 6 6 C 1.38136 * 119.94477 * 179.72083 * 5 4 3 7 7 C 1.38267 * 120.05921 * 0.25437 * 6 5 4 8 8 C 1.50701 * 119.94742 * 179.97438 * 7 6 5 9 9 O 1.42901 * 109.46797 * 299.99705 * 8 7 6 10 10 Si 1.86295 * 109.46934 * 179.97438 * 8 7 6 11 11 C 1.38273 * 120.10825 * 359.97438 * 7 6 5 12 12 C 1.38148 * 120.05237 * 359.97438 * 11 7 6 13 13 C 1.50700 * 109.47249 * 119.99392 * 2 1 3 14 14 O 1.21282 * 119.99989 * 245.00334 * 13 2 1 15 15 N 1.34774 * 119.99770 * 65.00786 * 13 2 1 16 16 C 1.46502 * 119.99914 * 180.02562 * 15 13 2 17 17 H 1.08993 * 112.85279 * 25.32912 * 16 15 13 18 18 C 1.53789 * 113.61342 * 156.52581 * 16 15 13 19 19 C 1.53780 * 87.07954 * 89.11367 * 18 16 15 20 20 H 1.09005 * 113.61330 * 270.88225 * 19 18 16 21 21 C 1.50701 * 113.61519 * 140.06354 * 19 18 16 22 22 C 1.38180 * 119.98809 * 119.99328 * 21 19 18 23 23 C 1.38480 * 119.97278 * 180.02562 * 22 21 19 24 24 F 1.35101 * 120.02215 * 179.97438 * 23 22 21 25 25 C 1.38438 * 119.94927 * 0.02562 * 23 22 21 26 26 C 1.38213 * 119.97579 * 359.97438 * 25 23 22 27 27 C 1.38228 * 120.02461 * 359.73082 * 26 25 23 28 28 C 1.53784 * 113.61166 * 254.13047 * 16 15 13 29 29 H 1.08992 * 109.47274 * 60.00216 * 1 2 3 30 30 H 1.09003 * 109.46653 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46916 * 299.99964 * 1 2 3 32 32 H 1.08993 * 109.47624 * 239.99934 * 2 1 3 33 33 H 1.08008 * 120.02463 * 359.97438 * 5 4 3 34 34 H 1.08006 * 119.97472 * 180.26817 * 6 5 4 35 35 H 1.09000 * 109.46856 * 59.99998 * 8 7 6 36 36 H 0.96701 * 113.99835 * 299.99680 * 9 8 7 37 37 H 1.48505 * 110.00025 * 58.68389 * 10 8 7 38 38 H 1.48503 * 109.99795 * 179.97438 * 10 8 7 39 39 H 1.07999 * 119.97124 * 180.02562 * 11 7 6 40 40 H 1.08001 * 120.02222 * 180.02562 * 12 11 7 41 41 H 0.97001 * 120.00154 * 359.97438 * 15 13 2 42 42 H 1.09003 * 113.61064 * 203.65887 * 18 16 15 43 43 H 1.08991 * 113.61071 * 334.56167 * 18 16 15 44 44 H 1.07997 * 120.00672 * 359.97438 * 22 21 19 45 45 H 1.08006 * 120.00982 * 179.97438 * 25 23 22 46 46 H 1.08000 * 119.98817 * 179.97438 * 26 25 23 47 47 H 1.08003 * 119.97525 * 180.29232 * 27 26 25 48 48 H 1.09001 * 113.61113 * 25.43315 * 28 16 15 49 49 H 1.08998 * 113.61655 * 156.33382 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.1112 1.9646 -1.2063 5 6 1.6572 1.3300 -2.3534 6 6 1.7597 1.9619 -3.5774 7 6 2.3189 3.2237 -3.6608 8 6 2.4299 3.9106 -4.9976 9 8 3.2323 3.1179 -5.8751 10 14 3.2202 5.5825 -4.7728 11 6 2.7764 3.8564 -2.5196 12 6 2.6752 3.2291 -1.2930 13 6 2.0324 -0.7103 1.2305 14 8 2.6530 -0.0977 2.0734 15 7 1.7921 -2.0263 1.3942 16 6 2.2800 -2.7167 2.5907 17 1 2.4151 -2.0472 3.4402 18 6 1.4907 -3.9920 2.9309 19 6 2.4773 -4.7493 2.0266 20 1 2.1683 -4.7913 0.9821 21 6 2.8848 -6.0942 2.5708 22 6 2.6248 -7.2408 1.8447 23 6 2.9989 -8.4765 2.3453 24 9 2.7447 -9.5981 1.6364 25 6 3.6325 -8.5617 3.5732 26 6 3.8916 -7.4136 4.2978 27 6 3.5232 -6.1801 3.7943 28 6 3.4902 -3.6278 2.3258 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.2203 0.3443 -2.2888 34 1 1.4024 1.4701 -4.4702 35 1 1.4354 4.0338 -5.4264 36 1 4.1326 2.9671 -5.5561 37 1 4.5640 5.4308 -4.1591 38 1 3.3360 6.2699 -6.0841 39 1 3.2124 4.8422 -2.5872 40 1 3.0324 3.7239 -0.4019 41 1 1.2955 -2.5162 0.7202 42 1 1.5537 -4.2773 3.9811 43 1 0.4683 -3.9864 2.5534 44 1 2.1293 -7.1731 0.8875 45 1 3.9244 -9.5250 3.9648 46 1 4.3855 -7.4798 5.2559 47 1 3.7302 -5.2830 4.3590 48 1 4.0807 -3.3284 1.4599 49 1 4.0988 -3.8137 3.2107 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705262_10157680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:11 Heat of formation + Delta-G solvation = -59.987784 kcal Electronic energy + Delta-G solvation = -32100.310250 eV Core-core repulsion = 27488.938205 eV Total energy + Delta-G solvation = -4611.372045 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.157 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.93306 -41.94532 -41.30273 -40.32703 -39.22677 -38.52101 -37.26494 -34.91241 -33.17148 -32.11736 -31.99201 -31.43701 -31.03669 -26.87425 -26.70819 -26.45277 -25.28805 -24.16041 -23.75526 -22.87254 -22.41626 -21.51681 -20.32808 -19.46437 -18.71367 -18.35114 -18.23131 -17.40189 -17.23193 -17.06793 -16.84880 -16.63925 -16.62296 -16.30008 -16.21820 -15.91748 -15.67107 -15.51014 -15.22409 -14.95464 -14.75987 -14.56548 -14.32663 -14.26702 -14.16245 -13.85792 -13.66747 -13.49739 -13.33795 -13.28557 -12.99203 -12.91418 -12.82577 -12.72208 -12.26605 -12.13378 -12.07145 -11.79517 -11.71051 -11.60074 -11.28445 -10.94631 -10.59780 -10.18890 -10.03862 -9.90977 -9.61629 -9.22531 -4.91840 0.14978 0.23317 0.24565 0.32805 1.33007 1.38003 1.46960 1.60318 1.95886 2.47328 2.56273 2.64754 3.22311 3.42167 3.43357 3.44240 3.63760 3.64835 3.68619 3.72612 3.83030 3.86246 3.87213 3.92731 3.96446 4.09105 4.14593 4.25182 4.27264 4.36048 4.41773 4.56023 4.59044 4.61818 4.65903 4.70749 4.77354 4.82369 4.87968 4.92521 4.99717 5.01062 5.09363 5.10623 5.12612 5.17556 5.19262 5.29154 5.37071 5.44957 5.48121 5.61640 5.68336 5.92894 6.25273 6.43436 6.49342 7.07827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.064 3.936 3 O -0.312 6.312 4 C 0.120 3.880 5 C -0.208 4.208 6 C -0.056 4.056 7 C -0.159 4.159 8 C -0.072 4.072 9 O -0.548 6.548 10 Si 0.757 3.243 11 C -0.077 4.077 12 C -0.160 4.160 13 C 0.519 3.481 14 O -0.567 6.567 15 N -0.691 5.691 16 C 0.115 3.885 17 H 0.086 0.914 18 C -0.121 4.121 19 C -0.068 4.068 20 H 0.115 0.885 21 C -0.044 4.044 22 C -0.158 4.158 23 C 0.072 3.928 24 F -0.155 7.155 25 C -0.170 4.170 26 C -0.090 4.090 27 C -0.129 4.129 28 C -0.143 4.143 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.125 0.875 33 H 0.155 0.845 34 H 0.140 0.860 35 H 0.128 0.872 36 H 0.385 0.615 37 H -0.287 1.287 38 H -0.303 1.303 39 H 0.147 0.853 40 H 0.135 0.865 41 H 0.420 0.580 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.144 0.856 45 H 0.140 0.860 46 H 0.153 0.847 47 H 0.148 0.852 48 H 0.067 0.933 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.027 -1.434 0.393 4.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 O -0.225 6.225 4 C 0.075 3.925 5 C -0.226 4.226 6 C -0.074 4.074 7 C -0.159 4.159 8 C -0.182 4.182 9 O -0.356 6.356 10 Si 0.663 3.337 11 C -0.094 4.094 12 C -0.178 4.178 13 C 0.305 3.695 14 O -0.444 6.444 15 N -0.345 5.345 16 C 0.010 3.990 17 H 0.105 0.895 18 C -0.159 4.159 19 C -0.086 4.086 20 H 0.133 0.867 21 C -0.044 4.044 22 C -0.176 4.176 23 C 0.053 3.947 24 F -0.134 7.134 25 C -0.188 4.188 26 C -0.108 4.108 27 C -0.147 4.147 28 C -0.181 4.181 29 H 0.104 0.896 30 H 0.128 0.872 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.172 0.828 34 H 0.157 0.843 35 H 0.145 0.855 36 H 0.234 0.766 37 H -0.214 1.214 38 H -0.232 1.232 39 H 0.165 0.835 40 H 0.153 0.847 41 H 0.258 0.742 42 H 0.123 0.877 43 H 0.112 0.888 44 H 0.162 0.838 45 H 0.158 0.842 46 H 0.171 0.829 47 H 0.166 0.834 48 H 0.086 0.914 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.440 -0.454 0.623 3.526 hybrid contribution 0.771 -1.599 -0.706 1.911 sum -2.670 -2.053 -0.083 3.369 Atomic orbital electron populations 1.22366 0.90400 1.05739 1.04438 1.22413 0.97247 0.82184 0.97678 1.86194 1.81462 1.26972 1.27886 1.19265 0.95793 0.93181 0.84256 1.21523 1.06574 1.02603 0.91882 1.20987 0.95341 0.93726 0.97375 1.20272 1.03436 0.96873 0.95334 1.25058 1.01016 1.03280 0.88815 1.86561 1.28432 1.72366 1.48282 0.94178 0.82002 0.76987 0.80539 1.20974 0.97788 0.99534 0.91110 1.20584 1.03877 0.94146 0.99219 1.20510 0.78924 0.82676 0.87371 1.90754 1.41391 1.67026 1.45269 1.45396 1.57249 1.07851 1.23976 1.21877 0.95833 0.93322 0.87996 0.89537 1.23375 0.99045 0.92033 1.01412 1.21703 0.97264 0.88958 1.00661 0.86721 1.19698 0.96410 0.94235 0.94094 1.21230 1.03508 0.90641 1.02249 1.18072 1.01812 0.82593 0.92216 1.91476 1.92506 1.51074 1.78311 1.21415 1.01785 1.01466 0.94160 1.21327 0.97943 0.91236 1.00294 1.21402 0.98739 0.98685 0.95905 1.23631 0.96574 0.94774 1.03158 0.89573 0.87216 0.92058 0.85799 0.82795 0.84250 0.85476 0.76563 1.21371 1.23171 0.83549 0.84737 0.74228 0.87693 0.88848 0.83809 0.84177 0.82905 0.83418 0.91379 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.20 9.12 71.98 0.66 1.86 16 2 C 0.06 -0.13 2.64 29.85 0.08 -0.06 16 3 O -0.31 -1.77 9.34 -73.52 -0.69 -2.46 16 4 C 0.12 0.37 6.60 22.50 0.15 0.52 16 5 C -0.21 0.30 8.24 22.36 0.18 0.48 16 6 C -0.06 0.06 9.60 22.25 0.21 0.27 16 7 C -0.16 0.08 5.39 -19.85 -0.11 -0.03 16 8 C -0.07 0.09 2.82 71.24 0.20 0.29 16 9 O -0.55 -0.94 12.77 -148.98 -1.90 -2.84 16 10 Si 0.76 -1.22 29.78 68.60 2.04 0.82 16 11 C -0.08 0.01 8.66 22.26 0.19 0.20 16 12 C -0.16 -0.47 9.99 22.37 0.22 -0.24 16 13 C 0.52 1.12 7.18 87.66 0.63 1.75 16 14 O -0.57 -7.58 16.13 15.96 0.26 -7.32 16 15 N -0.69 3.89 5.23 -440.03 -2.30 1.59 16 16 C 0.12 -0.51 4.30 45.52 0.20 -0.32 16 17 H 0.09 0.05 7.50 -2.39 -0.02 0.03 16 18 C -0.12 1.04 7.29 31.12 0.23 1.27 16 19 C -0.07 0.51 3.87 -10.92 -0.04 0.47 16 20 H 0.11 -1.18 8.09 -2.38 -0.02 -1.20 16 21 C -0.04 0.16 5.29 -19.87 -0.11 0.05 16 22 C -0.16 0.07 9.69 22.31 0.22 0.29 16 23 C 0.07 0.24 7.30 22.38 0.16 0.40 16 24 F -0.15 -1.07 17.27 44.97 0.78 -0.29 16 25 C -0.17 -0.11 10.03 22.31 0.22 0.11 16 26 C -0.09 0.25 10.04 22.26 0.22 0.47 16 27 C -0.13 0.51 8.63 22.27 0.19 0.70 16 28 C -0.14 0.74 7.27 31.21 0.23 0.96 16 29 H 0.09 -0.67 6.91 -2.39 -0.02 -0.68 16 30 H 0.11 -1.46 7.92 -2.39 -0.02 -1.48 16 31 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.12 -0.95 6.31 -2.39 -0.02 -0.96 16 33 H 0.15 -1.10 5.43 -2.91 -0.02 -1.11 16 34 H 0.14 -0.45 8.06 -2.91 -0.02 -0.48 16 35 H 0.13 -0.42 7.96 -2.39 -0.02 -0.44 16 36 H 0.39 -1.28 8.70 -74.06 -0.64 -1.92 16 37 H -0.29 -0.80 7.11 99.48 0.71 -0.09 16 38 H -0.30 -1.87 7.11 99.48 0.71 -1.16 16 39 H 0.15 -0.56 4.87 -2.91 -0.01 -0.57 16 40 H 0.13 0.33 8.06 -2.91 -0.02 0.31 16 41 H 0.42 -5.38 8.49 -92.71 -0.79 -6.16 16 42 H 0.10 -0.91 7.73 -2.39 -0.02 -0.93 16 43 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 44 H 0.14 -0.49 8.05 -2.91 -0.02 -0.52 16 45 H 0.14 -0.20 8.06 -2.91 -0.02 -0.23 16 46 H 0.15 -1.10 8.06 -2.91 -0.02 -1.12 16 47 H 0.15 -1.14 6.65 -2.91 -0.02 -1.16 16 48 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 49 H 0.10 -0.57 6.31 -2.39 -0.02 -0.59 16 Total: 0.00 -24.69 406.26 1.75 -22.94 By element: Atomic # 1 Polarization: -21.53 SS G_CDS: -0.38 Total: -21.91 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 3.94 Total: 9.46 kcal Atomic # 7 Polarization: 3.89 SS G_CDS: -2.30 Total: 1.59 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -2.33 Total: -12.62 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.78 Total: -0.29 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: 2.04 Total: 0.82 kcal Total: -24.69 1.75 -22.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705262_10157680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.046 kcal (2) G-P(sol) polarization free energy of solvation -24.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds