Wall clock time and date at job start Tue Mar 9 2021 12:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37643 * 125.68022 * 2 1 4 4 C 1.46684 * 126.23259 * 359.97438 * 3 2 1 5 5 O 1.21693 * 119.99857 * 5.09565 * 4 3 2 6 6 N 1.34772 * 120.00043 * 185.10418 * 4 3 2 7 7 C 1.46497 * 120.00012 * 185.93233 * 6 4 3 8 8 H 1.09001 * 112.85091 * 334.66470 * 7 6 4 9 9 C 1.53783 * 113.61612 * 105.85957 * 7 6 4 10 10 C 1.54053 * 86.98696 * 89.16214 * 9 7 6 11 11 H 1.09003 * 113.68954 * 270.88033 * 10 9 7 12 12 C 1.50703 * 113.62004 * 139.97880 * 10 9 7 13 13 C 1.38172 * 119.98819 * 322.23463 * 12 10 9 14 14 C 1.38478 * 119.97457 * 179.72895 * 13 12 10 15 15 F 1.35101 * 120.02856 * 180.25432 * 14 13 12 16 16 C 1.38440 * 119.94670 * 0.53944 * 14 13 12 17 17 C 1.38217 * 119.97358 * 359.73714 * 16 14 13 18 18 C 1.38221 * 120.02726 * 359.97438 * 17 16 14 19 19 C 1.53780 * 113.61525 * 203.46717 * 7 6 4 20 20 C 1.37872 * 107.53828 * 180.02562 * 3 2 1 21 21 C 1.39836 * 107.08338 * 0.02562 * 20 3 2 22 22 C 1.35462 * 107.86312 * 359.73437 * 21 20 3 23 23 C 1.50696 * 125.56360 * 180.26352 * 22 21 20 24 24 O 1.42899 * 109.46995 * 150.19729 * 23 22 21 25 25 Si 1.86301 * 109.47479 * 30.19570 * 23 22 21 26 26 H 1.09001 * 109.46865 * 95.77094 * 1 2 3 27 27 H 1.08996 * 109.46730 * 215.76452 * 1 2 3 28 28 H 1.08996 * 109.46712 * 335.76680 * 1 2 3 29 29 H 0.97001 * 120.00373 * 5.92563 * 6 4 3 30 30 H 1.08998 * 113.62101 * 203.66399 * 9 7 6 31 31 H 1.09000 * 113.61399 * 334.56795 * 9 7 6 32 32 H 1.08004 * 120.01108 * 359.97438 * 13 12 10 33 33 H 1.08003 * 120.01343 * 179.74579 * 16 14 13 34 34 H 1.08005 * 119.98519 * 179.97438 * 17 16 14 35 35 H 1.08002 * 119.97372 * 180.02562 * 18 17 16 36 36 H 1.08990 * 113.61713 * 25.43243 * 19 7 6 37 37 H 1.09005 * 113.61684 * 156.25222 * 19 7 6 38 38 H 1.08002 * 126.46143 * 179.97438 * 20 3 2 39 39 H 1.07994 * 126.06855 * 180.02562 * 21 20 3 40 40 H 1.08997 * 109.46840 * 270.19434 * 23 22 21 41 41 H 0.96703 * 114.00495 * 299.99506 * 24 23 22 42 42 H 1.48500 * 109.99488 * 58.68070 * 25 23 22 43 43 H 1.48495 * 110.00161 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2679 1.1181 0.0000 4 6 1.8125 2.5124 -0.0005 5 8 0.6257 2.7649 0.0926 6 7 2.7084 3.5139 -0.1043 7 6 2.2696 4.9056 0.0255 8 1 1.2201 5.0444 -0.2338 9 6 2.6648 5.5539 1.3628 10 6 3.9781 5.9761 0.6769 11 1 4.7725 5.2341 0.7578 12 6 4.4336 7.3641 1.0472 13 6 3.5053 8.3734 1.2163 14 6 3.9237 9.6474 1.5620 15 9 3.0165 10.6339 1.7327 16 6 5.2728 9.9108 1.7268 17 6 6.2000 8.9009 1.5514 18 6 5.7807 7.6282 1.2122 19 6 3.2107 5.9141 -0.6543 20 6 3.5781 0.6888 -0.0006 21 6 3.5522 -0.7094 -0.0015 22 6 2.2555 -1.1010 0.0045 23 6 1.7709 -2.5279 0.0114 24 8 0.5131 -2.6005 0.6857 25 14 3.0117 -3.6010 0.8943 26 1 -0.3633 -0.1033 -1.0225 27 1 -0.3633 -0.8339 0.6006 28 1 -0.3632 0.9371 0.4218 29 1 3.6437 3.3132 -0.2648 30 1 2.0302 6.3939 1.6453 31 1 2.8039 4.8366 2.1716 32 1 2.4534 8.1679 1.0829 33 1 5.6006 10.9050 1.9924 34 1 7.2525 9.1063 1.6795 35 1 6.5059 6.8396 1.0758 36 1 3.7902 5.4874 -1.4729 37 1 2.7247 6.8519 -0.9237 38 1 4.4584 1.3143 -0.0011 39 1 4.4133 -1.3612 -0.0018 40 1 1.6537 -2.8767 -1.0146 41 1 0.5424 -2.3048 1.6059 42 1 3.2041 -3.1161 2.2847 43 1 2.5451 -5.0107 0.9085 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705262_10803936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:21 Heat of formation + Delta-G solvation = -1.577848 kcal Electronic energy + Delta-G solvation = -27290.183605 eV Core-core repulsion = 23218.364445 eV Total energy + Delta-G solvation = -4071.819159 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.93093 -42.61673 -41.42315 -40.03887 -38.62840 -37.93133 -34.91384 -33.66820 -32.08625 -31.48201 -31.06061 -27.58616 -27.20777 -26.73422 -25.91718 -23.86024 -23.29649 -22.65383 -21.56810 -20.63268 -20.15678 -18.92214 -18.56579 -18.10370 -17.26524 -17.20228 -17.03231 -16.92561 -16.63764 -16.35126 -16.08715 -15.72762 -15.56687 -15.27284 -14.96187 -14.79871 -14.71189 -14.50894 -14.24369 -14.16798 -13.89786 -13.80278 -13.49388 -13.21136 -13.00221 -12.92857 -12.89711 -12.46441 -12.36803 -11.96327 -11.94554 -11.71533 -11.27065 -11.21353 -10.81450 -10.20400 -9.88340 -9.73384 -9.60791 -9.09437 -4.86788 0.17752 0.23803 0.35167 1.18254 1.53914 1.74079 1.76741 2.01992 2.29843 2.33490 2.58398 3.14445 3.22794 3.46542 3.57012 3.62848 3.64072 3.75562 3.82951 3.94194 3.98102 4.07174 4.24773 4.27846 4.29187 4.36332 4.43115 4.49219 4.56301 4.60498 4.69749 4.74023 4.81653 4.88598 4.93943 4.99959 5.09935 5.12342 5.13451 5.19059 5.20264 5.38138 5.48828 5.62103 5.74265 5.95015 6.00150 6.13451 6.29256 6.47499 7.11443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.408 5.408 3 C -0.086 4.086 4 C 0.588 3.412 5 O -0.589 6.589 6 N -0.685 5.685 7 C 0.117 3.883 8 H 0.082 0.918 9 C -0.145 4.145 10 C -0.062 4.062 11 H 0.127 0.873 12 C -0.046 4.046 13 C -0.161 4.161 14 C 0.070 3.930 15 F -0.156 7.156 16 C -0.169 4.169 17 C -0.090 4.090 18 C -0.124 4.124 19 C -0.124 4.124 20 C -0.122 4.122 21 C -0.201 4.201 22 C 0.005 3.995 23 C -0.069 4.069 24 O -0.548 6.548 25 Si 0.819 3.181 26 H 0.068 0.932 27 H 0.111 0.889 28 H 0.086 0.914 29 H 0.419 0.581 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.179 0.821 39 H 0.186 0.814 40 H 0.131 0.869 41 H 0.386 0.614 42 H -0.291 1.291 43 H -0.299 1.299 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.907 -2.704 -1.371 9.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.081 5.081 3 C -0.199 4.199 4 C 0.378 3.622 5 O -0.471 6.471 6 N -0.336 5.336 7 C 0.011 3.989 8 H 0.101 0.899 9 C -0.183 4.183 10 C -0.080 4.080 11 H 0.145 0.855 12 C -0.046 4.046 13 C -0.180 4.180 14 C 0.052 3.948 15 F -0.135 7.135 16 C -0.188 4.188 17 C -0.108 4.108 18 C -0.142 4.142 19 C -0.162 4.162 20 C -0.148 4.148 21 C -0.224 4.224 22 C -0.112 4.112 23 C -0.176 4.176 24 O -0.356 6.356 25 Si 0.722 3.278 26 H 0.087 0.913 27 H 0.129 0.871 28 H 0.104 0.896 29 H 0.258 0.742 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.174 0.826 35 H 0.174 0.826 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.196 0.804 39 H 0.203 0.797 40 H 0.149 0.851 41 H 0.236 0.764 42 H -0.217 1.217 43 H -0.226 1.226 Dipole moment (debyes) X Y Z Total from point charges 7.571 -3.175 -1.211 8.299 hybrid contribution -1.469 1.033 0.728 1.938 sum 6.102 -2.142 -0.484 6.485 Atomic orbital electron populations 1.22513 0.76226 1.05745 1.04065 1.43914 1.06997 1.04744 1.52477 1.20198 0.91669 0.87061 1.20995 1.17259 0.85214 0.84450 0.75294 1.90765 1.18073 1.85363 1.52936 1.45117 1.11747 1.04341 1.72401 1.21839 0.99497 0.80074 0.97450 0.89929 1.23614 0.97056 1.00692 0.96985 1.21706 0.97220 0.92900 0.96148 0.85526 1.19704 0.93029 0.94813 0.97056 1.21129 1.01660 0.91402 1.03764 1.18063 0.87237 0.85897 1.03653 1.91472 1.67260 1.61449 1.93344 1.21428 0.91168 1.02212 1.03997 1.21376 1.00614 0.92138 0.96662 1.21515 0.95474 0.97814 0.99358 1.23362 0.96955 0.98958 0.96913 1.21747 0.94215 0.95844 1.03025 1.21030 0.95325 0.95624 1.10426 1.21479 0.91652 0.89225 1.08868 1.25291 0.93338 0.94303 1.04657 1.86561 1.30782 1.88208 1.30037 0.93301 0.82698 0.73183 0.78625 0.91333 0.87140 0.89587 0.74248 0.89070 0.91039 0.84552 0.84167 0.82594 0.82576 0.88646 0.88492 0.80391 0.79721 0.85139 0.76433 1.21722 1.22630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.26 10.33 127.77 1.32 1.58 16 2 N -0.41 -1.86 3.16 -519.70 -1.64 -3.50 16 3 C -0.09 -0.33 6.89 40.35 0.28 -0.05 16 4 C 0.59 3.49 7.77 86.45 0.67 4.16 16 5 O -0.59 -8.19 14.14 -4.33 -0.06 -8.25 16 6 N -0.68 1.28 5.24 -444.00 -2.32 -1.05 16 7 C 0.12 -0.17 4.33 45.52 0.20 0.03 16 8 H 0.08 0.32 7.44 -2.39 -0.02 0.31 16 9 C -0.14 0.38 7.27 31.21 0.23 0.60 16 10 C -0.06 0.40 3.87 -10.92 -0.04 0.35 16 11 H 0.13 -1.36 8.09 -2.39 -0.02 -1.38 16 12 C -0.05 0.13 5.29 -19.87 -0.11 0.02 16 13 C -0.16 -0.20 8.58 22.31 0.19 -0.01 16 14 C 0.07 0.31 7.30 22.38 0.16 0.48 16 15 F -0.16 -1.32 17.27 44.97 0.78 -0.54 16 16 C -0.17 -0.17 10.03 22.31 0.22 0.05 16 17 C -0.09 0.28 10.04 22.26 0.22 0.51 16 18 C -0.12 0.56 9.71 22.27 0.22 0.78 16 19 C -0.12 0.73 7.28 31.12 0.23 0.96 16 20 C -0.12 0.32 10.35 22.57 0.23 0.55 16 21 C -0.20 0.68 9.37 22.01 0.21 0.89 16 22 C 0.01 0.00 6.14 41.34 0.25 0.26 16 23 C -0.07 0.16 2.99 71.23 0.21 0.37 16 24 O -0.55 -0.21 10.10 -148.98 -1.51 -1.72 16 25 Si 0.82 -4.01 31.11 68.60 2.13 -1.88 16 26 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.11 0.18 5.24 -2.39 -0.01 0.17 16 28 H 0.09 0.75 5.92 -2.39 -0.01 0.73 16 29 H 0.42 -3.56 7.66 -92.71 -0.71 -4.27 16 30 H 0.09 -0.14 6.33 -2.39 -0.02 -0.15 16 31 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.14 0.00 6.68 -2.91 -0.02 -0.02 16 33 H 0.14 -0.16 8.06 -2.91 -0.02 -0.18 16 34 H 0.16 -1.27 8.06 -2.91 -0.02 -1.29 16 35 H 0.16 -1.57 8.05 -2.91 -0.02 -1.59 16 36 H 0.10 -0.79 8.14 -2.39 -0.02 -0.81 16 37 H 0.10 -0.46 7.72 -2.38 -0.02 -0.48 16 38 H 0.18 -1.80 7.49 -2.91 -0.02 -1.83 16 39 H 0.19 -1.96 6.86 -2.91 -0.02 -1.98 16 40 H 0.13 -0.52 7.96 -2.39 -0.02 -0.53 16 41 H 0.39 -1.55 8.32 -74.05 -0.62 -2.17 16 42 H -0.29 -0.21 7.11 99.48 0.71 0.50 16 43 H -0.30 -0.72 7.11 99.48 0.71 -0.01 16 Total: 0.00 -22.03 357.07 1.86 -20.17 By element: Atomic # 1 Polarization: -14.54 SS G_CDS: -0.22 Total: -14.76 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 4.70 Total: 11.53 kcal Atomic # 7 Polarization: -0.58 SS G_CDS: -3.97 Total: -4.55 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -1.57 Total: -9.97 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.78 Total: -0.54 kcal Atomic # 14 Polarization: -4.01 SS G_CDS: 2.13 Total: -1.88 kcal Total: -22.03 1.86 -20.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705262_10803936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.594 kcal (2) G-P(sol) polarization free energy of solvation -22.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds