Wall clock time and date at job start Tue Mar 9 2021 12:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35658 * 117.00276 * 2 1 4 4 C 1.38404 * 120.11830 * 359.72984 * 3 2 1 5 5 C 1.38726 * 120.03017 * 179.72140 * 4 3 2 6 6 O 1.35716 * 119.86036 * 180.29917 * 5 4 3 7 7 C 1.42897 * 117.00302 * 0.25186 * 6 5 4 8 8 C 1.39144 * 120.27165 * 0.55188 * 5 4 3 9 9 C 1.50699 * 119.87735 * 179.74673 * 8 5 4 10 10 O 1.42900 * 109.47047 * 74.97860 * 9 8 5 11 11 Si 1.86299 * 109.46945 * 194.97714 * 9 8 5 12 12 C 1.37581 * 120.24338 * 359.72528 * 8 5 4 13 13 C 1.39818 * 119.96185 * 359.97438 * 12 8 5 14 14 C 1.47304 * 120.13754 * 179.97438 * 13 12 8 15 15 O 1.21619 * 120.00148 * 180.02562 * 14 13 12 16 16 N 1.34777 * 119.99633 * 0.02562 * 14 13 12 17 17 C 1.46499 * 119.99877 * 180.02562 * 16 14 13 18 18 H 1.09004 * 112.84880 * 23.81013 * 17 16 14 19 19 C 1.53781 * 113.61414 * 155.00343 * 17 16 14 20 20 C 1.53780 * 87.08402 * 89.11595 * 19 17 16 21 21 H 1.08997 * 113.61981 * 270.80326 * 20 19 17 22 22 C 1.50694 * 113.61678 * 139.97889 * 20 19 17 23 23 C 1.38177 * 119.98919 * 120.00566 * 22 20 19 24 24 C 1.38483 * 119.97756 * 179.97438 * 23 22 20 25 25 F 1.35100 * 120.02358 * 180.02562 * 24 23 22 26 26 C 1.38439 * 119.94591 * 359.97438 * 24 23 22 27 27 C 1.38216 * 119.97760 * 0.02562 * 26 24 23 28 28 C 1.38228 * 120.02189 * 359.74437 * 27 26 24 29 29 C 1.53780 * 113.61656 * 252.50223 * 17 16 14 30 30 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46938 * 59.99682 * 1 2 3 32 32 H 1.09004 * 109.46926 * 299.99803 * 1 2 3 33 33 H 1.08006 * 119.98354 * 359.97188 * 4 3 2 34 34 H 1.09003 * 109.47133 * 60.00121 * 7 6 5 35 35 H 1.08993 * 109.46811 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.47075 * 300.00186 * 7 6 5 37 37 H 1.08995 * 109.47541 * 314.97618 * 9 8 5 38 38 H 0.96706 * 113.99929 * 179.97438 * 10 9 8 39 39 H 1.48506 * 110.00105 * 178.67870 * 11 9 8 40 40 H 1.48500 * 110.00334 * 299.99917 * 11 9 8 41 41 H 1.07996 * 120.02135 * 180.02562 * 12 8 5 42 42 H 0.97003 * 120.00479 * 0.02562 * 16 14 13 43 43 H 1.08997 * 113.61982 * 203.66525 * 19 17 16 44 44 H 1.08999 * 113.61429 * 334.57032 * 19 17 16 45 45 H 1.08000 * 120.01054 * 359.95536 * 23 22 20 46 46 H 1.07996 * 120.00878 * 179.97438 * 26 24 23 47 47 H 1.08002 * 119.99064 * 179.97438 * 27 26 24 48 48 H 1.08007 * 119.97251 * 180.25768 * 28 27 26 49 49 H 1.08997 * 113.61693 * 25.42749 * 29 17 16 50 50 H 1.09003 * 113.61409 * 156.34067 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 1.2936 2.3710 -0.0056 5 6 1.9253 3.6061 0.0002 6 8 1.1852 4.7437 0.0008 7 6 -0.2358 4.5931 0.0008 8 6 3.3146 3.6833 0.0002 9 6 3.9916 5.0297 0.0008 10 8 3.8937 5.6115 1.3023 11 14 5.7865 4.8224 -0.4533 12 6 4.0725 2.5351 0.0000 13 6 3.4462 1.2850 0.0005 14 6 4.2539 0.0532 -0.0002 15 8 3.7065 -1.0329 -0.0003 16 7 5.5995 0.1297 -0.0008 17 6 6.4028 -1.0955 -0.0020 18 1 5.8661 -1.9530 -0.4080 19 6 7.8082 -0.9099 -0.5979 20 6 8.2753 -0.5417 0.8202 21 1 8.1909 0.5214 1.0455 22 6 9.6240 -1.1104 1.1783 23 6 10.6644 -0.2640 1.5105 24 6 11.9037 -0.7869 1.8401 25 9 12.9214 0.0398 2.1656 26 6 12.0984 -2.1576 1.8368 27 6 11.0563 -3.0024 1.5041 28 6 9.8185 -2.4794 1.1800 29 6 7.0954 -1.3794 1.3412 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 0.2150 2.3165 -0.0105 34 1 -0.5430 4.0435 0.8905 35 1 -0.7053 5.5768 0.0017 36 1 -0.5430 4.0443 -0.8894 37 1 3.5060 5.6810 -0.7258 38 1 4.3095 6.4815 1.3765 39 1 6.4580 6.1465 -0.4874 40 1 6.4602 3.9365 0.5298 41 1 5.1506 2.5992 0.0004 42 1 6.0361 0.9959 -0.0003 43 1 8.2475 -1.8329 -0.9764 44 1 7.8762 -0.0855 -1.3078 45 1 10.5113 0.8051 1.5129 46 1 13.0645 -2.5665 2.0932 47 1 11.2081 -4.0717 1.5010 48 1 9.0036 -3.1405 0.9242 49 1 6.5881 -0.9339 2.1969 50 1 7.3398 -2.4308 1.4929 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705262_12297780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:32 Heat of formation + Delta-G solvation = -89.271990 kcal Electronic energy + Delta-G solvation = -35807.979697 eV Core-core repulsion = 30876.655602 eV Total energy + Delta-G solvation = -4931.324095 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.156 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -49.92829 -42.13567 -41.38574 -40.32402 -39.80914 -38.61657 -38.33945 -37.15134 -34.57721 -32.41304 -32.27965 -31.62777 -31.01200 -28.97434 -28.20585 -26.66435 -26.43327 -26.03910 -24.64953 -23.74916 -23.09462 -22.41927 -21.57674 -20.30220 -19.91253 -18.81202 -18.54739 -18.29242 -18.06619 -17.36939 -17.28260 -17.08636 -17.05180 -16.70834 -16.63351 -16.53274 -16.38133 -15.95839 -15.76635 -15.63704 -15.52205 -15.45426 -14.92924 -14.57884 -14.35216 -14.18607 -14.10723 -13.87751 -13.82152 -13.71105 -13.50966 -13.40828 -12.94839 -12.79215 -12.78347 -12.69662 -12.53479 -12.50010 -12.13987 -11.90477 -11.76655 -11.66934 -11.62310 -11.23298 -10.95014 -10.41632 -10.10218 -9.91661 -9.89830 -9.59946 -9.19148 -4.92895 -0.26030 0.07440 0.16553 0.24468 1.29166 1.58487 1.71695 1.92579 2.07741 2.11596 2.18264 2.56702 2.59131 3.23224 3.32946 3.45630 3.53296 3.66587 3.68117 3.70546 3.76361 3.86617 3.88651 3.99211 4.08287 4.12478 4.15635 4.18387 4.24010 4.26667 4.28619 4.29010 4.31079 4.43131 4.44581 4.63945 4.67894 4.69308 4.76584 4.81063 4.84860 4.91639 4.93887 4.95670 5.04625 5.05522 5.12032 5.16388 5.20398 5.29343 5.39008 5.51991 5.67287 5.94173 6.03116 6.28579 6.51782 6.63806 7.24135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.303 6.303 3 C 0.219 3.781 4 C -0.310 4.310 5 C 0.214 3.786 6 O -0.312 6.312 7 C 0.012 3.988 8 C -0.163 4.163 9 C -0.074 4.074 10 O -0.556 6.556 11 Si 0.755 3.245 12 C 0.000 4.000 13 C -0.228 4.228 14 C 0.568 3.432 15 O -0.560 6.560 16 N -0.704 5.704 17 C 0.117 3.883 18 H 0.093 0.907 19 C -0.122 4.122 20 C -0.073 4.073 21 H 0.105 0.895 22 C -0.043 4.043 23 C -0.161 4.161 24 C 0.073 3.927 25 F -0.155 7.155 26 C -0.169 4.169 27 C -0.088 4.088 28 C -0.128 4.128 29 C -0.143 4.143 30 H 0.114 0.886 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.165 0.835 34 H 0.064 0.936 35 H 0.121 0.879 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.392 0.608 39 H -0.284 1.284 40 H -0.270 1.270 41 H 0.158 0.842 42 H 0.408 0.592 43 H 0.110 0.890 44 H 0.092 0.908 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.156 0.844 48 H 0.150 0.850 49 H 0.063 0.937 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.912 2.042 -4.092 5.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.213 6.213 3 C 0.169 3.831 4 C -0.330 4.330 5 C 0.166 3.834 6 O -0.223 6.223 7 C -0.082 4.082 8 C -0.164 4.164 9 C -0.182 4.182 10 O -0.366 6.366 11 Si 0.658 3.342 12 C -0.018 4.018 13 C -0.232 4.232 14 C 0.357 3.643 15 O -0.439 6.439 16 N -0.357 5.357 17 C 0.011 3.989 18 H 0.111 0.889 19 C -0.159 4.159 20 C -0.091 4.091 21 H 0.124 0.876 22 C -0.043 4.043 23 C -0.179 4.179 24 C 0.054 3.946 25 F -0.134 7.134 26 C -0.187 4.187 27 C -0.106 4.106 28 C -0.146 4.146 29 C -0.182 4.182 30 H 0.132 0.868 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.183 0.817 34 H 0.083 0.917 35 H 0.139 0.861 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.242 0.758 39 H -0.211 1.211 40 H -0.196 1.196 41 H 0.175 0.825 42 H 0.246 0.754 43 H 0.128 0.872 44 H 0.111 0.889 45 H 0.158 0.842 46 H 0.160 0.840 47 H 0.173 0.827 48 H 0.168 0.832 49 H 0.081 0.919 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.650 0.865 -3.722 4.650 hybrid contribution -0.303 1.645 1.234 2.079 sum -2.953 2.510 -2.488 4.606 Atomic orbital electron populations 1.23485 0.76491 1.05813 1.02656 1.86362 1.23225 1.25743 1.86005 1.18954 0.91014 0.84772 0.88340 1.21417 1.02065 0.90657 1.18821 1.18907 0.90819 0.85067 0.88603 1.86111 1.21098 1.28609 1.86521 1.23477 0.76203 1.05937 1.02618 1.18591 0.90442 0.94931 1.12423 1.24850 1.12421 0.93117 0.87811 1.86569 1.80788 1.38683 1.30511 0.94414 0.71481 0.80770 0.87529 1.20941 1.00096 0.89135 0.91645 1.19115 0.90921 0.93687 1.19453 1.17981 0.82418 0.88290 0.75603 1.90813 1.72244 1.30089 1.50766 1.45495 1.05010 1.09878 1.75283 1.21864 0.91621 0.87881 0.97484 0.88889 1.23407 0.92654 1.04390 0.95494 1.21650 0.89572 1.00288 0.97569 0.87642 1.19678 0.94539 0.93368 0.96726 1.21212 0.91668 1.01653 1.03403 1.18054 0.85384 0.88655 1.02546 1.91473 1.59020 1.72356 1.90538 1.21414 1.02073 0.91358 1.03878 1.21341 0.91821 1.01083 0.96367 1.21405 0.98136 0.94800 1.00209 1.23600 0.95535 1.01637 0.97382 0.86796 0.90762 0.91294 0.81742 0.91716 0.86112 0.90815 0.89854 0.75809 1.21060 1.19649 0.82493 0.75435 0.87210 0.88895 0.84246 0.84035 0.82666 0.83210 0.91865 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.30 -2.59 8.56 -68.77 -0.59 -3.18 16 3 C 0.22 1.50 6.70 22.82 0.15 1.66 16 4 C -0.31 -0.77 8.01 22.43 0.18 -0.59 16 5 C 0.21 0.78 6.67 22.60 0.15 0.93 16 6 O -0.31 -0.73 9.80 -90.38 -0.89 -1.61 16 7 C 0.01 -0.06 9.80 113.37 1.11 1.05 16 8 C -0.16 -0.48 5.30 -19.80 -0.11 -0.59 16 9 C -0.07 0.00 2.36 71.24 0.17 0.17 16 10 O -0.56 -1.61 12.86 -148.98 -1.92 -3.53 16 11 Si 0.76 -3.09 30.19 68.60 2.07 -1.02 16 12 C 0.00 0.00 8.14 22.50 0.18 0.18 16 13 C -0.23 -1.44 5.89 -20.00 -0.12 -1.55 16 14 C 0.57 4.74 7.76 86.63 0.67 5.41 16 15 O -0.56 -9.10 14.75 16.87 0.25 -8.85 16 16 N -0.70 -0.68 5.21 -443.41 -2.31 -2.99 16 17 C 0.12 -0.07 4.32 45.52 0.20 0.13 16 18 H 0.09 0.29 7.46 -2.38 -0.02 0.27 16 19 C -0.12 0.66 7.29 31.12 0.23 0.89 16 20 C -0.07 0.27 3.86 -11.01 -0.04 0.23 16 21 H 0.11 -0.52 8.09 -2.39 -0.02 -0.54 16 22 C -0.04 0.04 5.29 -19.87 -0.11 -0.06 16 23 C -0.16 -0.33 9.69 22.31 0.22 -0.12 16 24 C 0.07 0.36 7.30 22.38 0.16 0.53 16 25 F -0.16 -1.31 17.27 44.97 0.78 -0.54 16 26 C -0.17 -0.31 10.03 22.31 0.22 -0.08 16 27 C -0.09 0.15 10.04 22.26 0.22 0.37 16 28 C -0.13 0.30 8.62 22.27 0.19 0.49 16 29 C -0.14 0.23 7.25 31.12 0.23 0.46 16 30 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 31 H 0.07 -0.36 7.65 -2.39 -0.02 -0.38 16 32 H 0.07 -0.27 7.67 -2.38 -0.02 -0.29 16 33 H 0.17 -0.48 4.50 -2.91 -0.01 -0.50 16 34 H 0.06 -0.40 7.66 -2.39 -0.02 -0.42 16 35 H 0.12 -1.01 8.14 -2.39 -0.02 -1.03 16 36 H 0.07 -0.58 7.64 -2.39 -0.02 -0.60 16 37 H 0.08 -0.15 7.82 -2.39 -0.02 -0.17 16 38 H 0.39 -1.95 8.74 -74.05 -0.65 -2.60 16 39 H -0.28 -0.14 7.11 99.48 0.71 0.57 16 40 H -0.27 0.30 6.74 99.48 0.67 0.97 16 41 H 0.16 -0.55 3.20 -2.91 -0.01 -0.56 16 42 H 0.41 -1.73 6.72 -92.71 -0.62 -2.35 16 43 H 0.11 -0.74 7.73 -2.39 -0.02 -0.76 16 44 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 45 H 0.14 -0.02 8.05 -2.91 -0.02 -0.05 16 46 H 0.14 -0.08 8.06 -2.91 -0.02 -0.11 16 47 H 0.16 -1.01 8.06 -2.91 -0.02 -1.04 16 48 H 0.15 -0.96 6.64 -2.91 -0.02 -0.98 16 49 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 50 H 0.11 -0.36 6.29 -2.39 -0.02 -0.38 16 Total: 0.00 -25.25 411.15 2.18 -23.07 By element: Atomic # 1 Polarization: -11.71 SS G_CDS: -0.24 Total: -11.96 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 5.03 Total: 10.60 kcal Atomic # 7 Polarization: -0.68 SS G_CDS: -2.31 Total: -2.99 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -3.14 Total: -17.17 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.78 Total: -0.54 kcal Atomic # 14 Polarization: -3.09 SS G_CDS: 2.07 Total: -1.02 kcal Total: -25.25 2.18 -23.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705262_12297780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.199 kcal (2) G-P(sol) polarization free energy of solvation -25.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds