Wall clock time and date at job start Tue Mar 9 2021 12:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86299 * 109.47072 * 2 1 4 4 C 1.50694 * 109.46992 * 119.99691 * 2 1 3 5 5 C 1.37866 * 119.88932 * 65.28410 * 4 2 1 6 6 C 1.39654 * 119.87814 * 180.23157 * 5 4 2 7 7 C 1.47691 * 120.16856 * 179.74120 * 6 5 4 8 8 O 1.21571 * 120.00166 * 179.72012 * 7 6 5 9 9 N 1.34776 * 119.99809 * 359.72259 * 7 6 5 10 10 C 1.46501 * 119.99775 * 180.02562 * 9 7 6 11 11 H 1.08996 * 112.84970 * 23.80265 * 10 9 7 12 12 C 1.53785 * 113.61435 * 154.99908 * 10 9 7 13 13 C 1.53783 * 87.08168 * 89.11163 * 12 10 9 14 14 H 1.08995 * 113.61634 * 270.80086 * 13 12 10 15 15 C 1.50699 * 113.61148 * 139.97895 * 13 12 10 16 16 C 1.38226 * 119.99053 * 300.02330 * 15 13 12 17 17 C 1.38265 * 120.05319 * 179.97438 * 16 15 13 18 18 C 1.38176 * 120.02306 * 359.78900 * 17 16 15 19 19 C 1.38487 * 119.97468 * 0.46543 * 18 17 16 20 20 F 1.35104 * 120.02441 * 179.78758 * 19 18 17 21 21 C 1.38216 * 119.98433 * 120.00527 * 15 13 12 22 22 C 1.53779 * 113.61284 * 252.49517 * 10 9 7 23 23 C 1.39831 * 119.66537 * 359.46466 * 6 5 4 24 24 F 1.35097 * 120.10680 * 180.25817 * 23 6 5 25 25 C 1.38320 * 119.78166 * 0.27445 * 23 6 5 26 26 C 1.38213 * 120.11468 * 0.02562 * 25 23 6 27 27 H 0.96701 * 114.00016 * 299.99957 * 1 2 3 28 28 H 1.08995 * 109.46716 * 240.00072 * 2 1 3 29 29 H 1.48507 * 109.99812 * 300.00179 * 3 2 1 30 30 H 1.48498 * 110.00232 * 61.31759 * 3 2 1 31 31 H 1.07992 * 120.06026 * 359.97007 * 5 4 2 32 32 H 0.97002 * 120.00176 * 359.97438 * 9 7 6 33 33 H 1.09006 * 113.61311 * 334.56812 * 12 10 9 34 34 H 1.08999 * 113.61290 * 203.66282 * 12 10 9 35 35 H 1.08001 * 119.97063 * 359.97438 * 16 15 13 36 36 H 1.07993 * 119.98872 * 180.02562 * 17 16 15 37 37 H 1.07999 * 120.01654 * 180.22962 * 18 17 16 38 38 H 1.08004 * 120.01333 * 0.04169 * 21 15 13 39 39 H 1.09000 * 113.61770 * 156.33900 * 22 10 9 40 40 H 1.09002 * 113.61588 * 25.43318 * 22 10 9 41 41 H 1.07995 * 119.94193 * 180.02562 * 25 23 6 42 42 H 1.07993 * 119.83028 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 1.6892 -2.0578 1.3929 6 6 2.1506 -2.7148 2.5356 7 6 1.8898 -4.1569 2.7188 8 8 2.2972 -4.7269 3.7123 9 7 1.2001 -4.8410 1.7845 10 6 0.9409 -6.2714 1.9666 11 1 0.9689 -6.5768 3.0125 12 6 -0.3010 -6.7734 1.2112 13 6 0.6302 -7.0397 0.0166 14 1 0.7370 -6.1860 -0.6526 15 6 0.3232 -8.3214 -0.7141 16 6 0.3856 -9.5297 -0.0458 17 6 0.1036 -10.7064 -0.7148 18 6 -0.2452 -10.6752 -2.0515 19 6 -0.3029 -9.4657 -2.7235 20 9 -0.6396 -9.4344 -4.0315 21 6 -0.0211 -8.2881 -2.0523 22 6 1.7728 -7.1712 1.0376 23 6 2.8657 -2.0017 3.5026 24 9 3.3207 -2.6295 4.6090 25 6 3.1055 -0.6513 3.3229 26 6 2.6393 -0.0088 2.1915 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5138 -0.8900 29 1 1.5615 2.4679 -1.2085 30 1 1.5879 2.4586 1.2242 31 1 1.1400 -2.6033 0.6398 32 1 0.8747 -4.3861 0.9920 33 1 -1.0414 -5.9959 1.0227 34 1 -0.7348 -7.6782 1.6368 35 1 0.6548 -9.5547 0.9998 36 1 0.1522 -11.6499 -0.1916 37 1 -0.4691 -11.5941 -2.5730 38 1 -0.0694 -7.3439 -2.5744 39 1 1.9059 -8.1848 1.4157 40 1 2.7066 -6.7149 0.7090 41 1 3.6579 -0.0981 4.0680 42 1 2.8287 1.0458 2.0561 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705262_12335834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:36 Heat of formation + Delta-G solvation = -67.483529 kcal Electronic energy + Delta-G solvation = -28950.949893 eV Core-core repulsion = 24499.556262 eV Total energy + Delta-G solvation = -4451.393630 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.01899 -49.93049 -41.78576 -40.82759 -39.88128 -38.65867 -37.56713 -34.85159 -32.80233 -32.33294 -31.89195 -31.12753 -26.72967 -26.70610 -26.57981 -25.30779 -23.80218 -23.40286 -22.54809 -21.71406 -20.33613 -19.24154 -18.61080 -18.36213 -18.16094 -17.38080 -17.36751 -17.07241 -16.95504 -16.84031 -16.63595 -16.21864 -16.04475 -16.01066 -15.69442 -15.56304 -15.24626 -14.77959 -14.61151 -14.47130 -14.37789 -14.18387 -13.85503 -13.57844 -13.52442 -13.23035 -12.98258 -12.87546 -12.80685 -12.72803 -12.28465 -11.80706 -11.72740 -11.71765 -11.29683 -11.23807 -10.62520 -10.42156 -10.12988 -9.91224 -9.84868 -9.61631 -4.87914 -0.50724 -0.03483 0.14904 0.23226 1.31306 1.58355 1.62499 1.89884 2.01730 2.46002 2.56248 3.04272 3.21964 3.32786 3.39958 3.45772 3.52818 3.61140 3.64671 3.68443 3.85871 3.95006 3.99323 4.06974 4.10883 4.14447 4.24518 4.41459 4.45909 4.59501 4.62654 4.75547 4.77034 4.78623 4.85699 4.87022 4.92217 4.94743 4.99855 5.08725 5.11499 5.13863 5.17307 5.36854 5.44223 5.59050 5.61133 5.92768 6.33747 6.50327 7.03132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.075 4.075 3 Si 0.760 3.240 4 C -0.131 4.131 5 C -0.023 4.023 6 C -0.188 4.188 7 C 0.557 3.443 8 O -0.569 6.569 9 N -0.692 5.692 10 C 0.113 3.887 11 H 0.089 0.911 12 C -0.123 4.123 13 C -0.068 4.068 14 H 0.112 0.888 15 C -0.044 4.044 16 C -0.129 4.129 17 C -0.089 4.089 18 C -0.169 4.169 19 C 0.073 3.927 20 F -0.154 7.154 21 C -0.158 4.158 22 C -0.140 4.140 23 C 0.134 3.866 24 F -0.137 7.137 25 C -0.152 4.152 26 C -0.053 4.053 27 H 0.388 0.612 28 H 0.137 0.863 29 H -0.307 1.307 30 H -0.277 1.277 31 H 0.159 0.841 32 H 0.415 0.585 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.166 0.834 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.532 3.333 -1.857 3.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.184 4.184 3 Si 0.666 3.334 4 C -0.131 4.131 5 C -0.042 4.042 6 C -0.192 4.192 7 C 0.345 3.655 8 O -0.449 6.449 9 N -0.344 5.344 10 C 0.007 3.993 11 H 0.107 0.893 12 C -0.161 4.161 13 C -0.086 4.086 14 H 0.131 0.869 15 C -0.044 4.044 16 C -0.147 4.147 17 C -0.107 4.107 18 C -0.187 4.187 19 C 0.054 3.946 20 F -0.133 7.133 21 C -0.177 4.177 22 C -0.178 4.178 23 C 0.114 3.886 24 F -0.115 7.115 25 C -0.171 4.171 26 C -0.070 4.070 27 H 0.238 0.762 28 H 0.155 0.845 29 H -0.235 1.235 30 H -0.203 1.203 31 H 0.177 0.823 32 H 0.253 0.747 33 H 0.106 0.894 34 H 0.125 0.875 35 H 0.166 0.834 36 H 0.172 0.828 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.122 0.878 40 H 0.088 0.912 41 H 0.184 0.816 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.688 3.400 -1.712 3.868 hybrid contribution -1.186 -0.295 0.070 1.224 sum -0.499 3.105 -1.642 3.548 Atomic orbital electron populations 1.86604 1.18046 1.80254 1.50346 1.25152 0.83665 1.11409 0.98159 0.94126 0.90299 0.72301 0.76703 1.20379 1.00617 0.94182 0.97950 1.21204 0.94601 0.94180 0.94223 1.20038 1.06937 0.93791 0.98448 1.18303 0.77864 0.86611 0.82690 1.90844 1.52428 1.70996 1.30658 1.45437 1.55675 1.09664 1.23644 1.21915 0.97414 0.79684 1.00256 0.89321 1.23400 0.95649 1.02781 0.94274 1.21638 0.96930 0.94861 0.95146 0.86949 1.19675 0.96819 0.95663 0.92276 1.21399 1.00291 0.91533 1.01475 1.21330 0.96430 0.99941 0.93024 1.21421 1.03768 0.97037 0.96520 1.18064 1.02487 0.95848 0.78247 1.91478 1.90225 1.97484 1.34143 1.21224 1.03360 0.97542 0.95556 1.23572 0.97457 1.01064 0.95729 1.18214 0.95498 0.91720 0.83177 1.91560 1.86343 1.82936 1.50644 1.21378 1.03333 0.91432 1.00956 1.21418 0.93330 1.01097 0.91192 0.76240 0.84515 1.23489 1.20319 0.82340 0.74681 0.89361 0.87492 0.83381 0.82802 0.84081 0.83918 0.87807 0.91215 0.81644 0.81760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 2.48 12.83 -148.98 -1.91 0.57 16 2 C -0.07 0.59 2.80 71.23 0.20 0.79 16 3 Si 0.76 -5.78 29.87 68.60 2.05 -3.74 16 4 C -0.13 0.87 5.34 -19.90 -0.11 0.76 16 5 C -0.02 0.11 9.17 22.52 0.21 0.32 16 6 C -0.19 -0.38 5.88 -20.05 -0.12 -0.50 16 7 C 0.56 3.29 7.77 86.74 0.67 3.97 16 8 O -0.57 -8.80 14.94 -3.94 -0.06 -8.86 16 9 N -0.69 1.21 5.21 -443.05 -2.31 -1.10 16 10 C 0.11 -0.22 4.32 45.52 0.20 -0.02 16 11 H 0.09 0.24 7.46 -2.39 -0.02 0.22 16 12 C -0.12 0.76 7.29 31.12 0.23 0.99 16 13 C -0.07 0.39 3.86 -11.01 -0.04 0.34 16 14 H 0.11 -0.91 8.09 -2.39 -0.02 -0.92 16 15 C -0.04 0.10 5.29 -19.87 -0.11 0.00 16 16 C -0.13 0.40 8.61 22.27 0.19 0.59 16 17 C -0.09 0.20 10.04 22.26 0.22 0.42 16 18 C -0.17 -0.20 10.03 22.31 0.22 0.02 16 19 C 0.07 0.29 7.30 22.38 0.16 0.45 16 20 F -0.15 -1.16 17.27 44.97 0.78 -0.39 16 21 C -0.16 -0.10 9.69 22.31 0.22 0.11 16 22 C -0.14 0.51 7.25 31.12 0.23 0.73 16 23 C 0.13 0.56 7.29 22.67 0.17 0.73 16 24 F -0.14 -1.55 15.55 44.97 0.70 -0.85 16 25 C -0.15 0.45 10.01 22.28 0.22 0.67 16 26 C -0.05 0.37 8.66 22.32 0.19 0.56 16 27 H 0.39 -3.70 8.70 -74.06 -0.64 -4.34 16 28 H 0.14 -1.42 7.96 -2.39 -0.02 -1.44 16 29 H -0.31 -0.47 7.11 99.48 0.71 0.24 16 30 H -0.28 1.19 7.00 99.48 0.70 1.88 16 31 H 0.16 -1.53 6.40 -2.91 -0.02 -1.55 16 32 H 0.41 -3.27 6.73 -92.71 -0.62 -3.89 16 33 H 0.09 -0.66 8.14 -2.38 -0.02 -0.68 16 34 H 0.11 -0.73 7.72 -2.39 -0.02 -0.75 16 35 H 0.15 -1.02 6.66 -2.91 -0.02 -1.04 16 36 H 0.15 -1.04 8.06 -2.91 -0.02 -1.07 16 37 H 0.14 -0.15 8.06 -2.91 -0.02 -0.17 16 38 H 0.14 -0.30 8.05 -2.91 -0.02 -0.32 16 39 H 0.10 -0.49 6.31 -2.39 -0.02 -0.50 16 40 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.17 -1.13 8.06 -2.91 -0.02 -1.15 16 42 H 0.17 -1.93 4.81 -2.91 -0.01 -1.95 16 Total: 0.00 -23.05 359.76 2.06 -20.99 By element: Atomic # 1 Polarization: -17.42 SS G_CDS: -0.14 Total: -17.56 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 2.96 Total: 10.93 kcal Atomic # 7 Polarization: 1.21 SS G_CDS: -2.31 Total: -1.10 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -1.97 Total: -8.29 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 1.48 Total: -1.23 kcal Atomic # 14 Polarization: -5.78 SS G_CDS: 2.05 Total: -3.74 kcal Total: -23.05 2.06 -20.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705262_12335834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.494 kcal (2) G-P(sol) polarization free energy of solvation -23.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds