Wall clock time and date at job start Tue Mar 9 2021 12:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86307 * 109.47195 * 2 1 4 4 C 1.50700 * 109.47331 * 239.99931 * 2 1 3 5 5 C 1.38403 * 119.82534 * 300.00138 * 4 2 1 6 6 C 1.37893 * 120.16807 * 180.27866 * 5 4 2 7 7 C 1.39836 * 119.82402 * 359.46824 * 6 5 4 8 8 C 1.47206 * 120.16774 * 180.23013 * 7 6 5 9 9 C 1.34814 * 119.99752 * 0.27872 * 8 7 6 10 10 C 1.46436 * 119.99794 * 179.97438 * 9 8 7 11 11 O 1.21697 * 119.99908 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99879 * 180.02562 * 10 9 8 13 13 C 1.46494 * 119.99820 * 180.02562 * 12 10 9 14 14 H 1.09005 * 112.85163 * 336.18721 * 13 12 10 15 15 C 1.53777 * 113.62204 * 107.49912 * 13 12 10 16 16 C 1.53780 * 87.08250 * 89.11231 * 15 13 12 17 17 H 1.09003 * 113.61845 * 270.88889 * 16 15 13 18 18 C 1.50695 * 113.69090 * 139.99500 * 16 15 13 19 19 C 1.38229 * 119.98725 * 142.47022 * 18 16 15 20 20 C 1.38266 * 120.05154 * 179.97438 * 19 18 16 21 21 C 1.38182 * 120.02554 * 359.97438 * 20 19 18 22 22 C 1.38486 * 119.97344 * 0.02562 * 21 20 19 23 23 F 1.35098 * 120.02399 * 179.97438 * 22 21 20 24 24 C 1.38220 * 119.98619 * 322.18826 * 18 16 15 25 25 C 1.53779 * 113.61284 * 205.00140 * 13 12 10 26 26 C 1.39838 * 119.66234 * 0.50754 * 7 6 5 27 27 C 1.37887 * 119.82695 * 359.74447 * 26 7 6 28 28 H 0.96700 * 113.99633 * 300.00288 * 1 2 3 29 29 H 1.09000 * 109.47103 * 119.99314 * 2 1 3 30 30 H 1.48503 * 109.99752 * 300.00029 * 3 2 1 31 31 H 1.48503 * 109.99810 * 61.31338 * 3 2 1 32 32 H 1.08002 * 119.91248 * 359.97438 * 5 4 2 33 33 H 1.08004 * 120.08196 * 179.70429 * 6 5 4 34 34 H 1.07996 * 120.00158 * 180.27077 * 8 7 6 35 35 H 1.07996 * 120.00095 * 359.97438 * 9 8 7 36 36 H 0.96995 * 120.00017 * 359.97438 * 12 10 9 37 37 H 1.08990 * 113.61929 * 203.66264 * 15 13 12 38 38 H 1.09005 * 113.60955 * 334.57037 * 15 13 12 39 39 H 1.08000 * 119.97251 * 359.97438 * 19 18 16 40 40 H 1.07996 * 119.98879 * 179.97438 * 20 19 18 41 41 H 1.08000 * 120.01212 * 179.97438 * 21 20 19 42 42 H 1.08001 * 120.01326 * 0.02872 * 24 18 16 43 43 H 1.08997 * 113.61671 * 25.42414 * 25 13 12 44 44 H 1.08997 * 113.61800 * 156.33456 * 25 13 12 45 45 H 1.08003 * 120.08380 * 179.72712 * 26 7 6 46 46 H 1.07995 * 119.91918 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.5948 -2.0355 -1.4459 6 6 2.0554 -2.6941 -2.5664 7 6 2.8552 -2.0164 -3.4919 8 6 3.3467 -2.7106 -4.6933 9 6 3.0214 -4.0014 -4.9063 10 6 3.5099 -4.6919 -6.1017 11 8 4.2099 -4.1006 -6.9025 12 7 3.1842 -5.9822 -6.3150 13 6 3.6734 -6.6731 -7.5106 14 1 3.9174 -5.9899 -8.3242 15 6 4.7758 -7.7047 -7.2184 16 6 3.6507 -8.7338 -7.0189 17 1 3.2805 -8.7832 -5.9949 18 6 3.9626 -10.0912 -7.5944 19 6 3.5575 -11.2333 -6.9294 20 6 3.8425 -12.4793 -7.4565 21 6 4.5325 -12.5842 -8.6492 22 6 4.9389 -11.4407 -9.3163 23 9 5.6139 -11.5421 -10.4821 24 6 4.6487 -10.1936 -8.7900 25 6 2.7906 -7.8556 -7.9432 26 6 3.1904 -0.6775 -3.2673 27 6 2.7265 -0.0342 -2.1393 28 1 -0.3933 0.4417 0.7650 29 1 1.7923 -0.5137 0.8900 30 1 1.5615 2.4679 -1.2085 31 1 1.5878 2.4586 1.2242 32 1 0.9740 -2.5564 -0.7320 33 1 1.7958 -3.7295 -2.7307 34 1 3.9679 -2.1859 -5.4040 35 1 2.4005 -4.5262 -4.1954 36 1 2.6266 -6.4536 -5.6765 37 1 5.4141 -7.9164 -8.0761 38 1 5.3410 -7.4943 -6.3105 39 1 3.0178 -11.1522 -5.9975 40 1 3.5258 -13.3709 -6.9359 41 1 4.7554 -13.5576 -9.0605 42 1 4.9616 -9.3010 -9.3114 43 1 1.7533 -7.7672 -7.6204 44 1 2.8863 -8.1087 -8.9990 45 1 3.8114 -0.1488 -3.9753 46 1 2.9849 0.9997 -1.9642 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705262_12360594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:14 Heat of formation + Delta-G solvation = -10.877733 kcal Electronic energy + Delta-G solvation = -28376.671397 eV Core-core repulsion = 24113.422594 eV Total energy + Delta-G solvation = -4263.248803 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.142 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.93414 -41.59286 -40.64436 -40.18278 -38.71154 -37.85488 -35.17358 -34.57792 -32.10385 -31.96940 -31.49237 -31.23933 -27.41812 -26.72155 -26.20624 -24.30167 -23.93901 -23.55390 -22.65670 -22.01195 -20.58426 -20.11494 -18.85193 -18.56253 -18.31108 -17.49766 -17.27060 -17.08277 -17.01195 -16.64180 -16.45683 -16.30578 -16.03788 -15.62557 -15.47879 -15.15710 -15.07440 -14.77431 -14.60281 -14.33604 -14.19294 -14.08064 -13.89826 -13.83771 -13.49581 -13.39385 -13.17592 -12.96515 -12.92013 -12.46488 -12.27691 -12.02541 -11.95846 -11.77797 -11.70087 -11.32922 -11.21561 -11.08818 -10.50375 -10.13107 -9.96384 -9.88658 -9.61535 -9.22001 -4.93939 -0.54157 0.16979 0.22968 0.41162 0.88762 1.29178 1.58405 1.93768 2.12680 2.22062 2.57551 2.79155 3.22467 3.36228 3.48065 3.56334 3.63801 3.70195 3.75144 3.81800 3.85617 3.95118 3.97282 4.06756 4.16681 4.20581 4.23697 4.28560 4.33746 4.42368 4.44883 4.53740 4.63510 4.74486 4.82144 4.88537 4.89576 4.93532 4.96750 5.00390 5.09995 5.11586 5.13769 5.17330 5.19297 5.37558 5.40338 5.49254 5.51650 5.61351 5.64297 5.91070 5.94109 6.54019 6.56787 7.21802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.085 4.085 3 Si 0.757 3.243 4 C -0.076 4.076 5 C -0.106 4.106 6 C -0.100 4.100 7 C -0.084 4.084 8 C -0.018 4.018 9 C -0.210 4.210 10 C 0.545 3.455 11 O -0.591 6.591 12 N -0.693 5.693 13 C 0.114 3.886 14 H 0.081 0.919 15 C -0.145 4.145 16 C -0.063 4.063 17 H 0.125 0.875 18 C -0.046 4.046 19 C -0.125 4.125 20 C -0.090 4.090 21 C -0.169 4.169 22 C 0.071 3.929 23 F -0.156 7.156 24 C -0.161 4.161 25 C -0.125 4.125 26 C -0.096 4.096 27 C -0.127 4.127 28 H 0.396 0.604 29 H 0.100 0.900 30 H -0.302 1.302 31 H -0.286 1.286 32 H 0.136 0.864 33 H 0.152 0.848 34 H 0.126 0.874 35 H 0.162 0.838 36 H 0.419 0.581 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.147 0.853 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.138 -2.511 7.422 8.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.194 4.194 3 Si 0.663 3.337 4 C -0.076 4.076 5 C -0.124 4.124 6 C -0.117 4.117 7 C -0.084 4.084 8 C -0.038 4.038 9 C -0.231 4.231 10 C 0.336 3.664 11 O -0.474 6.474 12 N -0.344 5.344 13 C 0.008 3.992 14 H 0.100 0.900 15 C -0.183 4.183 16 C -0.081 4.081 17 H 0.143 0.857 18 C -0.046 4.046 19 C -0.143 4.143 20 C -0.108 4.108 21 C -0.188 4.188 22 C 0.052 3.948 23 F -0.135 7.135 24 C -0.179 4.179 25 C -0.163 4.163 26 C -0.114 4.114 27 C -0.144 4.144 28 H 0.246 0.754 29 H 0.117 0.883 30 H -0.230 1.230 31 H -0.214 1.214 32 H 0.154 0.846 33 H 0.170 0.830 34 H 0.144 0.856 35 H 0.179 0.821 36 H 0.257 0.743 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.173 0.827 40 H 0.174 0.826 41 H 0.159 0.841 42 H 0.155 0.845 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.164 0.836 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.748 -1.614 6.266 6.703 hybrid contribution -0.999 -0.258 0.084 1.035 sum -2.747 -1.872 6.351 7.168 Atomic orbital electron populations 1.86537 1.18408 1.80658 1.51147 1.24985 0.84125 1.11483 0.98780 0.94203 0.90559 0.72622 0.76325 1.19699 0.97487 0.94777 0.95624 1.21127 0.99095 0.94051 0.98095 1.21692 0.95932 1.01006 0.93116 1.19129 0.99801 0.94413 0.95029 1.22381 0.93527 0.94167 0.93705 1.22981 1.05540 0.96273 0.98265 1.18745 0.79390 0.82040 0.86267 1.90819 1.40338 1.67412 1.48789 1.45417 1.52911 1.11134 1.24963 1.21817 0.96014 0.93189 0.88181 0.90038 1.23550 0.96697 0.95124 1.02955 1.21655 0.97090 0.88766 1.00592 0.85709 1.19707 0.95803 0.95990 0.93103 1.21503 1.00227 0.91339 1.01207 1.21372 0.95986 0.99322 0.94101 1.21429 1.01822 0.97914 0.97609 1.18061 0.97430 0.95672 0.83622 1.91473 1.78242 1.97162 1.46583 1.21132 1.02486 0.96151 0.98168 1.23370 0.99500 0.92791 1.00677 1.21574 0.98788 0.93730 0.97279 1.21092 0.98865 1.00208 0.94275 0.75396 0.88252 1.22979 1.21361 0.84611 0.83000 0.85644 0.82062 0.74311 0.89190 0.90966 0.82727 0.82612 0.84110 0.84532 0.88815 0.88676 0.83560 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.48 12.74 -148.98 -1.90 -2.37 16 2 C -0.08 0.16 2.81 71.24 0.20 0.36 16 3 Si 0.76 -1.86 29.77 68.60 2.04 0.18 16 4 C -0.08 -0.06 5.43 -19.79 -0.11 -0.16 16 5 C -0.11 0.01 9.59 22.23 0.21 0.22 16 6 C -0.10 0.16 9.41 22.57 0.21 0.38 16 7 C -0.08 -0.02 5.87 -20.15 -0.12 -0.14 16 8 C -0.02 -0.02 9.46 23.84 0.23 0.21 16 9 C -0.21 0.30 9.41 23.62 0.22 0.52 16 10 C 0.54 2.00 7.74 86.38 0.67 2.67 16 11 O -0.59 -7.92 15.83 -4.34 -0.07 -7.98 16 12 N -0.69 1.98 5.26 -444.26 -2.34 -0.36 16 13 C 0.11 -0.15 4.32 45.52 0.20 0.05 16 14 H 0.08 0.35 7.46 -2.38 -0.02 0.33 16 15 C -0.14 0.33 7.26 31.12 0.23 0.55 16 16 C -0.06 0.37 3.85 -11.01 -0.04 0.33 16 17 H 0.12 -1.27 8.09 -2.39 -0.02 -1.29 16 18 C -0.05 0.10 5.29 -19.87 -0.11 0.00 16 19 C -0.12 0.50 9.71 22.27 0.22 0.72 16 20 C -0.09 0.25 10.04 22.26 0.22 0.47 16 21 C -0.17 -0.21 10.03 22.32 0.22 0.01 16 22 C 0.07 0.33 7.30 22.38 0.16 0.50 16 23 F -0.16 -1.33 17.27 44.97 0.78 -0.56 16 24 C -0.16 -0.26 8.58 22.31 0.19 -0.07 16 25 C -0.13 0.68 7.29 31.12 0.23 0.91 16 26 C -0.10 0.00 9.80 22.57 0.22 0.22 16 27 C -0.13 0.00 8.65 22.23 0.19 0.20 16 28 H 0.40 -2.76 8.74 -74.06 -0.65 -3.41 16 29 H 0.10 -0.61 7.96 -2.39 -0.02 -0.63 16 30 H -0.30 -1.63 7.11 99.48 0.71 -0.92 16 31 H -0.29 -0.49 7.11 99.48 0.71 0.22 16 32 H 0.14 -0.30 8.06 -2.91 -0.02 -0.32 16 33 H 0.15 -1.10 6.17 -2.91 -0.02 -1.11 16 34 H 0.13 0.40 7.52 -2.91 -0.02 0.38 16 35 H 0.16 -1.37 6.07 -2.91 -0.02 -1.39 16 36 H 0.42 -4.13 8.68 -92.71 -0.80 -4.94 16 37 H 0.09 -0.10 6.33 -2.39 -0.02 -0.11 16 38 H 0.07 -0.07 8.14 -2.38 -0.02 -0.09 16 39 H 0.16 -1.45 8.05 -2.91 -0.02 -1.48 16 40 H 0.16 -1.21 8.06 -2.91 -0.02 -1.23 16 41 H 0.14 -0.14 8.06 -2.91 -0.02 -0.16 16 42 H 0.14 0.05 6.68 -2.91 -0.02 0.03 16 43 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 44 H 0.09 -0.39 7.71 -2.39 -0.02 -0.41 16 45 H 0.15 -0.51 8.06 -2.91 -0.02 -0.53 16 46 H 0.14 -0.47 4.85 -2.91 -0.01 -0.49 16 Total: 0.00 -23.05 389.77 1.59 -21.46 By element: Atomic # 1 Polarization: -17.94 SS G_CDS: -0.38 Total: -18.31 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 3.45 Total: 7.94 kcal Atomic # 7 Polarization: 1.98 SS G_CDS: -2.34 Total: -0.36 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -1.97 Total: -10.36 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.78 Total: -0.56 kcal Atomic # 14 Polarization: -1.86 SS G_CDS: 2.04 Total: 0.18 kcal Total: -23.05 1.59 -21.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705262_12360594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.581 kcal (2) G-P(sol) polarization free energy of solvation -23.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds