Wall clock time and date at job start Tue Mar 9 2021 12:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86299 * 109.46899 * 2 1 4 4 C 1.50691 * 109.47363 * 120.00143 * 2 1 3 5 5 C 1.35081 * 126.07654 * 254.97353 * 4 2 1 6 6 N 1.35040 * 107.98348 * 180.02562 * 5 4 2 7 7 C 1.46500 * 125.93601 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47129 * 124.99437 * 7 6 5 9 9 O 1.21277 * 119.99948 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99369 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99390 * 180.02562 * 10 8 7 12 12 H 1.09000 * 112.91246 * 23.74616 * 11 10 8 13 13 C 1.53786 * 113.61518 * 154.99856 * 11 10 8 14 14 C 1.53781 * 87.17350 * 89.15486 * 13 11 10 15 15 H 1.08996 * 113.61580 * 270.76247 * 14 13 11 16 16 C 1.50703 * 113.61417 * 139.93966 * 14 13 11 17 17 C 1.38168 * 119.98643 * 120.00142 * 16 14 13 18 18 C 1.38482 * 119.97849 * 179.97438 * 17 16 14 19 19 F 1.35099 * 120.03008 * 180.02562 * 18 17 16 20 20 C 1.38446 * 119.94221 * 359.97438 * 18 17 16 21 21 C 1.38216 * 119.97326 * 0.02562 * 20 18 17 22 22 C 1.38218 * 120.02775 * 359.74513 * 21 20 18 23 23 C 1.53782 * 87.08260 * 25.39213 * 14 13 11 24 24 N 1.40074 * 108.13654 * 0.22405 * 6 5 4 25 25 C 1.31623 * 108.10772 * 359.62040 * 24 6 5 26 26 C 1.48414 * 126.03776 * 180.13031 * 25 24 6 27 27 C 1.39333 * 120.11954 * 145.01199 * 26 25 24 28 28 C 1.38017 * 119.88176 * 179.67669 * 27 26 25 29 29 C 1.38327 * 120.11653 * 0.62045 * 28 27 26 30 30 C 1.38323 * 120.24111 * 359.67898 * 29 28 27 31 31 C 1.38024 * 120.12035 * 359.97438 * 30 29 28 32 32 H 0.96700 * 113.99688 * 299.99316 * 1 2 3 33 33 H 1.09002 * 109.46837 * 240.00266 * 2 1 3 34 34 H 1.48502 * 110.00169 * 300.00534 * 3 2 1 35 35 H 1.48500 * 110.00137 * 61.32324 * 3 2 1 36 36 H 1.08004 * 126.00869 * 0.02562 * 5 4 2 37 37 H 1.09002 * 109.46956 * 4.99471 * 7 6 5 38 38 H 1.09002 * 109.46895 * 244.99742 * 7 6 5 39 39 H 0.97001 * 120.00492 * 359.97438 * 10 8 7 40 40 H 1.09002 * 113.61357 * 334.56403 * 13 11 10 41 41 H 1.09002 * 113.61608 * 203.74565 * 13 11 10 42 42 H 1.08008 * 120.01358 * 359.95436 * 17 16 14 43 43 H 1.08004 * 120.00728 * 179.97438 * 20 18 17 44 44 H 1.08004 * 119.98110 * 180.02562 * 21 20 18 45 45 H 1.08002 * 119.97318 * 180.25153 * 22 21 20 46 46 H 1.08997 * 113.61668 * 89.11298 * 23 14 13 47 47 H 1.08994 * 113.61387 * 220.02033 * 23 14 13 48 48 H 1.08004 * 120.05775 * 359.97438 * 27 26 25 49 49 H 1.07996 * 119.94348 * 180.31755 * 28 27 26 50 50 H 1.08000 * 119.87722 * 179.69892 * 29 28 27 51 51 H 1.07997 * 119.94239 * 180.02562 * 30 29 28 52 52 H 1.07992 * 120.06163 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.4634 -0.1250 2.3253 6 7 2.7894 -1.0991 3.2020 7 6 3.3956 -0.9012 4.5209 8 6 2.5424 -1.5652 5.5708 9 8 1.5281 -2.1469 5.2489 10 7 2.9067 -1.5125 6.8673 11 6 2.0776 -2.1584 7.8878 12 1 1.4611 -2.9630 7.4869 13 6 2.8550 -2.5512 9.1552 14 6 2.5248 -1.1514 9.6996 15 1 3.2649 -0.3953 9.4377 16 6 2.1710 -1.1414 11.1645 17 6 2.9282 -0.4020 12.0527 18 6 2.6026 -0.3924 13.3987 19 9 3.3420 0.3306 14.2680 20 6 1.5181 -1.1236 13.8525 21 6 0.7621 -1.8625 12.9620 22 6 1.0853 -1.8674 11.6181 23 6 1.2998 -1.1649 8.7701 24 7 2.4524 -2.3321 2.6290 25 6 1.9302 -2.1028 1.4428 26 6 1.4332 -3.1303 0.4941 27 6 0.3267 -2.8632 -0.3094 28 6 -0.1272 -3.8198 -1.1947 29 6 0.5064 -5.0468 -1.2758 30 6 1.6015 -5.3195 -0.4760 31 6 2.0681 -4.3675 0.4077 32 1 -0.3933 0.4416 0.7651 33 1 1.7923 -0.5138 -0.8900 34 1 1.5613 2.4680 -1.2084 35 1 1.5879 2.4585 1.2243 36 1 2.6035 0.9356 2.4736 37 1 3.4665 0.1659 4.7318 38 1 4.3931 -1.3407 4.5319 39 1 3.7182 -1.0475 7.1247 40 1 3.9190 -2.7127 8.9823 41 1 2.3904 -3.3599 9.7194 42 1 3.7740 0.1681 11.6975 43 1 1.2635 -1.1173 14.9020 44 1 -0.0842 -2.4326 13.3158 45 1 0.4916 -2.4418 10.9225 46 1 0.4089 -1.5945 9.2280 47 1 1.1083 -0.2072 8.2862 48 1 -0.1719 -1.9074 -0.2431 49 1 -0.9816 -3.6119 -1.8217 50 1 0.1450 -5.7943 -1.9664 51 1 2.0928 -6.2789 -0.5436 52 1 2.9234 -4.5813 1.0314 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705262_12622748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:28 Heat of formation + Delta-G solvation = 60.376678 kcal Electronic energy + Delta-G solvation = -36697.506041 eV Core-core repulsion = 31738.967720 eV Total energy + Delta-G solvation = -4958.538320 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.164 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -49.94079 -42.49350 -41.56061 -40.31865 -39.74045 -38.68245 -37.87104 -34.87762 -34.52679 -32.40395 -32.12441 -31.82642 -31.44032 -31.17154 -28.79546 -26.72375 -26.43309 -25.80702 -24.25430 -23.76984 -23.47993 -22.79501 -22.04388 -21.47109 -20.96795 -20.29196 -18.78377 -18.65552 -18.16036 -17.78370 -17.37243 -17.27532 -17.08096 -16.75555 -16.71054 -16.64000 -16.34416 -16.09109 -15.84430 -15.72612 -15.58656 -15.37187 -15.03419 -14.84760 -14.59910 -14.44656 -14.28899 -14.23912 -14.10704 -13.86825 -13.77484 -13.64897 -13.53619 -13.30884 -12.95541 -12.84041 -12.73733 -12.53752 -12.37829 -12.13174 -11.80992 -11.71373 -11.68613 -11.60440 -11.32302 -11.27775 -10.66142 -10.39684 -10.14895 -9.92377 -9.85991 -9.74810 -9.63152 -9.27521 -4.83168 0.08528 0.13309 0.21898 0.48962 0.82587 1.30321 1.43557 1.46278 1.65880 1.72383 2.05994 2.06449 2.54612 2.91696 3.20982 3.36762 3.42323 3.47253 3.57091 3.63197 3.67528 3.71832 3.85440 3.93116 3.97028 4.04692 4.07624 4.12818 4.14401 4.14864 4.20049 4.23680 4.35043 4.40319 4.46996 4.53988 4.61637 4.62770 4.74613 4.79838 4.82010 4.87965 4.88698 4.91061 4.98912 5.01628 5.08514 5.11637 5.16083 5.18989 5.32800 5.35511 5.45567 5.58589 5.61625 5.63117 5.65879 5.91312 5.92601 6.07195 6.45440 6.58115 6.62676 7.16139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.051 4.051 3 Si 0.784 3.216 4 C -0.262 4.262 5 C 0.075 3.925 6 N -0.359 5.359 7 C 0.110 3.890 8 C 0.497 3.503 9 O -0.566 6.566 10 N -0.694 5.694 11 C 0.117 3.883 12 H 0.077 0.923 13 C -0.124 4.124 14 C -0.064 4.064 15 H 0.119 0.881 16 C -0.045 4.045 17 C -0.156 4.156 18 C 0.073 3.927 19 F -0.154 7.154 20 C -0.169 4.169 21 C -0.091 4.091 22 C -0.131 4.131 23 C -0.140 4.140 24 N -0.293 5.293 25 C 0.110 3.890 26 C -0.037 4.037 27 C -0.113 4.113 28 C -0.132 4.132 29 C -0.117 4.117 30 C -0.131 4.131 31 C -0.108 4.108 32 H 0.383 0.617 33 H 0.105 0.895 34 H -0.306 1.306 35 H -0.262 1.262 36 H 0.218 0.782 37 H 0.179 0.821 38 H 0.146 0.854 39 H 0.422 0.578 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.147 0.853 43 H 0.141 0.859 44 H 0.152 0.848 45 H 0.145 0.855 46 H 0.095 0.905 47 H 0.072 0.928 48 H 0.151 0.849 49 H 0.140 0.860 50 H 0.145 0.855 51 H 0.142 0.858 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.455 3.820 1.789 6.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.160 4.160 3 Si 0.687 3.313 4 C -0.273 4.273 5 C -0.071 4.071 6 N -0.140 5.140 7 C -0.014 4.014 8 C 0.283 3.717 9 O -0.443 6.443 10 N -0.348 5.348 11 C 0.011 3.989 12 H 0.095 0.905 13 C -0.162 4.162 14 C -0.082 4.082 15 H 0.138 0.862 16 C -0.045 4.045 17 C -0.175 4.175 18 C 0.054 3.946 19 F -0.133 7.133 20 C -0.188 4.188 21 C -0.109 4.109 22 C -0.149 4.149 23 C -0.179 4.179 24 N -0.114 5.114 25 C -0.055 4.055 26 C -0.039 4.039 27 C -0.132 4.132 28 C -0.150 4.150 29 C -0.135 4.135 30 C -0.148 4.148 31 C -0.128 4.128 32 H 0.233 0.767 33 H 0.123 0.877 34 H -0.234 1.234 35 H -0.188 1.188 36 H 0.235 0.765 37 H 0.197 0.803 38 H 0.163 0.837 39 H 0.260 0.740 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.164 0.836 43 H 0.158 0.842 44 H 0.170 0.830 45 H 0.162 0.838 46 H 0.113 0.887 47 H 0.090 0.910 48 H 0.168 0.832 49 H 0.158 0.842 50 H 0.163 0.837 51 H 0.160 0.840 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.071 3.105 2.108 6.309 hybrid contribution -1.045 0.426 0.607 1.282 sum 4.025 3.531 2.716 6.004 Atomic orbital electron populations 1.86457 1.19179 1.79741 1.50086 1.24620 0.82768 1.12154 0.96425 0.94062 0.89743 0.70241 0.77286 1.20546 1.14087 0.92315 1.00383 1.22835 0.98306 0.96718 0.89203 1.48129 1.48086 1.03593 1.14218 1.22013 0.96966 1.06398 0.76022 1.21134 0.86005 0.80267 0.84289 1.90830 1.27810 1.43989 1.81652 1.45424 1.28193 1.56367 1.04842 1.21809 0.93685 0.95787 0.87631 0.90479 1.23374 1.02052 0.96647 0.94139 1.21638 0.98915 0.99083 0.88579 0.86250 1.19709 0.94238 0.95060 0.95504 1.21235 1.02606 1.02614 0.90997 1.18067 0.92965 0.95508 0.88071 1.91478 1.76136 1.76117 1.69551 1.21413 0.95826 0.99401 1.02163 1.21313 0.99292 0.97352 0.92932 1.21383 0.97527 0.99936 0.96053 1.23578 0.97566 1.00256 0.96491 1.77688 1.20542 1.04220 1.08998 1.20849 0.98694 0.93666 0.92329 1.18038 0.97014 0.92608 0.96194 1.21989 0.95233 1.01331 0.94631 1.21405 1.00794 0.93755 0.99013 1.21588 0.95465 0.97386 0.99082 1.21354 0.97437 0.99805 0.96242 1.21317 1.00024 0.92817 0.98615 0.76708 0.87683 1.23427 1.18781 0.76519 0.80346 0.83686 0.73985 0.89028 0.88319 0.83561 0.84157 0.83035 0.83759 0.88685 0.90973 0.83152 0.84239 0.83734 0.83987 0.86328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.88 10.10 -148.98 -1.50 -3.38 16 2 C -0.05 -0.06 2.00 71.23 0.14 0.09 16 3 Si 0.78 -3.22 30.80 68.60 2.11 -1.11 16 4 C -0.26 -0.94 5.34 -19.95 -0.11 -1.05 16 5 C 0.07 -0.13 9.96 83.47 0.83 0.70 16 6 N -0.36 -0.63 3.40 -351.90 -1.19 -1.83 16 7 C 0.11 -0.87 6.98 85.63 0.60 -0.27 16 8 C 0.50 -0.21 7.86 87.66 0.69 0.48 16 9 O -0.57 -7.18 15.32 -3.02 -0.05 -7.23 16 10 N -0.69 5.05 5.27 -439.74 -2.32 2.74 16 11 C 0.12 -0.49 4.33 45.58 0.20 -0.29 16 12 H 0.08 0.19 7.47 -2.39 -0.02 0.18 16 13 C -0.12 0.97 7.29 31.12 0.23 1.20 16 14 C -0.06 0.51 3.86 -11.01 -0.04 0.46 16 15 H 0.12 -1.37 8.09 -2.39 -0.02 -1.39 16 16 C -0.04 0.16 5.29 -19.87 -0.11 0.05 16 17 C -0.16 0.13 9.69 22.31 0.22 0.35 16 18 C 0.07 0.22 7.30 22.38 0.16 0.39 16 19 F -0.15 -1.01 17.27 44.97 0.78 -0.23 16 20 C -0.17 -0.12 10.03 22.31 0.22 0.10 16 21 C -0.09 0.21 10.04 22.26 0.22 0.44 16 22 C -0.13 0.44 8.62 22.27 0.19 0.64 16 23 C -0.14 0.76 7.26 31.18 0.23 0.99 16 24 N -0.29 -3.30 11.65 -48.16 -0.56 -3.86 16 25 C 0.11 1.15 6.74 42.53 0.29 1.43 16 26 C -0.04 -0.41 5.80 -20.04 -0.12 -0.53 16 27 C -0.11 -1.09 8.94 22.48 0.20 -0.89 16 28 C -0.13 -0.88 10.03 22.24 0.22 -0.66 16 29 C -0.12 -0.60 10.04 22.31 0.22 -0.37 16 30 C -0.13 -0.82 10.03 22.24 0.22 -0.60 16 31 C -0.11 -1.08 9.75 22.48 0.22 -0.86 16 32 H 0.38 -0.72 8.70 -74.06 -0.64 -1.37 16 33 H 0.11 0.26 7.84 -2.39 -0.02 0.24 16 34 H -0.31 -1.35 7.11 99.48 0.71 -0.65 16 35 H -0.26 0.96 6.99 99.48 0.70 1.66 16 36 H 0.22 -2.40 6.33 -2.91 -0.02 -2.41 16 37 H 0.18 -3.29 8.07 -2.39 -0.02 -3.31 16 38 H 0.15 -1.87 8.14 -2.39 -0.02 -1.89 16 39 H 0.42 -6.43 8.70 -92.71 -0.81 -7.23 16 40 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 41 H 0.10 -0.69 7.73 -2.39 -0.02 -0.71 16 42 H 0.15 -0.61 8.05 -2.91 -0.02 -0.64 16 43 H 0.14 -0.19 8.06 -2.91 -0.02 -0.22 16 44 H 0.15 -1.00 8.06 -2.91 -0.02 -1.02 16 45 H 0.14 -0.95 6.64 -2.91 -0.02 -0.97 16 46 H 0.09 -0.47 6.29 -2.39 -0.02 -0.49 16 47 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 48 H 0.15 1.41 4.52 -2.91 -0.01 1.39 16 49 H 0.14 0.36 8.06 -2.91 -0.02 0.34 16 50 H 0.14 -0.02 8.06 -2.91 -0.02 -0.04 16 51 H 0.14 0.22 8.06 -2.91 -0.02 0.20 16 52 H 0.12 1.14 8.06 -2.91 -0.02 1.11 16 Total: 0.00 -33.32 436.31 1.77 -31.55 By element: Atomic # 1 Polarization: -18.01 SS G_CDS: -0.43 Total: -18.45 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 4.94 Total: 1.79 kcal Atomic # 7 Polarization: 1.13 SS G_CDS: -4.07 Total: -2.94 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -1.55 Total: -10.61 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.78 Total: -0.23 kcal Atomic # 14 Polarization: -3.22 SS G_CDS: 2.11 Total: -1.11 kcal Total: -33.32 1.77 -31.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705262_12622748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.925 kcal (2) G-P(sol) polarization free energy of solvation -33.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds