Wall clock time and date at job start Tue Mar 9 2021 12:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86298 * 109.47178 * 2 1 4 4 C 1.50698 * 109.47216 * 120.00070 * 2 1 3 5 5 C 1.34853 * 125.90036 * 218.29804 * 4 2 1 6 6 C 1.40946 * 107.46859 * 180.23339 * 5 4 2 7 7 C 1.34847 * 107.46558 * 359.75342 * 6 5 4 8 8 N 1.36570 * 108.20381 * 0.02562 * 7 6 5 9 9 C 1.40203 * 125.66757 * 179.97438 * 8 7 6 10 10 C 1.38827 * 120.06640 * 56.09105 * 9 8 7 11 11 C 1.38119 * 119.93094 * 180.02562 * 10 9 8 12 12 C 1.38278 * 120.06611 * 359.97100 * 11 10 9 13 13 C 1.50698 * 119.93239 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47367 * 89.99964 * 13 12 11 15 15 O 1.21281 * 120.00138 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00116 * 179.97438 * 14 13 12 17 17 C 1.46505 * 120.00065 * 179.72534 * 16 14 13 18 18 H 1.08991 * 112.84973 * 23.80495 * 17 16 14 19 19 C 1.53781 * 113.61365 * 155.00491 * 17 16 14 20 20 C 1.53784 * 87.08300 * 89.11531 * 19 17 16 21 21 H 1.09004 * 113.61401 * 270.80000 * 20 19 17 22 22 C 1.50700 * 113.61466 * 139.98000 * 20 19 17 23 23 C 1.38228 * 119.98354 * 299.72576 * 22 20 19 24 24 C 1.38271 * 120.04502 * 179.72552 * 23 22 20 25 25 C 1.38176 * 120.02493 * 0.54870 * 24 23 22 26 26 C 1.38474 * 119.97766 * 359.72324 * 25 24 23 27 27 F 1.35094 * 120.02733 * 179.97438 * 26 25 24 28 28 C 1.38213 * 119.98727 * 119.99936 * 22 20 19 29 29 C 1.53781 * 87.08085 * 25.43299 * 20 19 17 30 30 C 1.38276 * 120.13086 * 0.27913 * 12 11 10 31 31 C 1.38113 * 120.06535 * 359.49488 * 30 12 11 32 32 H 0.96698 * 114.00402 * 60.00315 * 1 2 3 33 33 H 1.09005 * 109.47067 * 239.99950 * 2 1 3 34 34 H 1.48497 * 109.99856 * 59.99952 * 3 2 1 35 35 H 1.48498 * 110.00030 * 181.32280 * 3 2 1 36 36 H 1.07998 * 126.26620 * 359.97438 * 5 4 2 37 37 H 1.07997 * 126.26632 * 179.71904 * 6 5 4 38 38 H 1.08004 * 125.89842 * 180.02562 * 7 6 5 39 39 H 1.07992 * 120.03183 * 0.03756 * 10 9 8 40 40 H 1.08005 * 119.96638 * 180.02562 * 11 10 9 41 41 H 1.09002 * 109.47225 * 329.99843 * 13 12 11 42 42 H 1.09001 * 109.47049 * 210.00018 * 13 12 11 43 43 H 0.97005 * 120.00380 * 0.02562 * 16 14 13 44 44 H 1.09001 * 113.61106 * 203.66307 * 19 17 16 45 45 H 1.09004 * 113.61235 * 334.48217 * 19 17 16 46 46 H 1.07995 * 119.97404 * 0.02562 * 23 22 20 47 47 H 1.08000 * 119.98255 * 180.27804 * 24 23 22 48 48 H 1.08002 * 120.00839 * 179.74931 * 25 24 23 49 49 H 1.08005 * 120.01509 * 0.02562 * 28 22 20 50 50 H 1.08998 * 113.61579 * 220.02239 * 29 20 19 51 51 H 1.08995 * 113.61573 * 89.11412 * 29 20 19 52 52 H 1.07999 * 119.96363 * 179.74383 * 30 12 11 53 53 H 1.08008 * 120.03541 * 180.25613 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 3.0032 -0.3540 1.9671 6 6 3.1224 -1.2850 3.0186 7 6 2.1158 -2.1729 2.8891 8 7 1.3779 -1.8246 1.7939 9 6 0.2439 -2.5015 1.3232 10 6 -0.8423 -2.7064 2.1632 11 6 -1.9578 -3.3740 1.6968 12 6 -1.9937 -3.8375 0.3945 13 6 -3.2126 -4.5651 -0.1114 14 6 -4.1798 -3.5730 -0.7041 15 8 -3.9062 -2.3915 -0.7150 16 7 -5.3486 -3.9988 -1.2229 17 6 -6.2916 -3.0337 -1.7936 18 1 -5.8090 -2.1123 -2.1193 19 6 -7.2333 -3.6415 -2.8465 20 6 -8.1890 -3.9705 -1.6875 21 1 -8.0071 -4.9452 -1.2348 22 6 -9.6412 -3.7409 -2.0187 23 6 -10.0773 -2.4784 -2.3746 24 6 -11.4083 -2.2676 -2.6843 25 6 -12.3060 -3.3164 -2.6273 26 6 -11.8712 -4.5804 -2.2655 27 9 -12.7482 -5.6065 -2.2090 28 6 -10.5373 -4.7916 -1.9611 29 6 -7.5394 -2.8039 -0.9246 30 6 -0.9112 -3.6394 -0.4428 31 6 0.2052 -2.9684 0.0165 32 1 -0.3934 0.4416 -0.7650 33 1 1.7923 -0.5139 -0.8900 34 1 1.5615 2.4678 1.2085 35 1 3.5346 1.7702 -0.0322 36 1 3.6538 0.4880 1.7825 37 1 3.8813 -1.2871 3.7870 38 1 1.9259 -3.0142 3.5391 39 1 -0.8150 -2.3440 3.1801 40 1 -2.8033 -3.5334 2.3496 41 1 -3.6914 -5.0902 0.7151 42 1 -2.9157 -5.2839 -0.8752 43 1 -5.5674 -4.9438 -1.2145 44 1 -7.6337 -2.9098 -3.5483 45 1 -6.8248 -4.5228 -3.3409 46 1 -9.3771 -1.6573 -2.4155 47 1 -11.7471 -1.2817 -2.9665 48 1 -13.3463 -3.1506 -2.8653 49 1 -10.1972 -5.7769 -1.6783 50 1 -7.3785 -3.0100 0.1336 51 1 -8.0234 -1.8434 -1.1010 52 1 -0.9405 -4.0062 -1.4582 53 1 1.0487 -2.8103 -0.6393 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705262_13287746.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:17 Heat of formation + Delta-G solvation = 32.810325 kcal Electronic energy + Delta-G solvation = -36540.881909 eV Core-core repulsion = 31646.574133 eV Total energy + Delta-G solvation = -4894.307776 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 407.168 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -49.92686 -42.77535 -41.57963 -40.59201 -39.65059 -38.54461 -37.67248 -34.89540 -34.48547 -32.28140 -32.16918 -31.73155 -31.27424 -31.09860 -28.00470 -26.65958 -26.14130 -26.02684 -23.97526 -23.83121 -23.55612 -22.63080 -21.67726 -21.57312 -20.58076 -20.19548 -18.82139 -18.55090 -18.34760 -17.91912 -17.34450 -17.24256 -17.05566 -17.01542 -16.63089 -16.40733 -16.14940 -15.86423 -15.76349 -15.56957 -15.46091 -15.29491 -14.80126 -14.72378 -14.58736 -14.51388 -14.50147 -14.23176 -14.12088 -13.83264 -13.56179 -13.47284 -13.32780 -13.27539 -13.09318 -12.82283 -12.79698 -12.78020 -12.71752 -12.54132 -12.10987 -12.03890 -11.75911 -11.65189 -11.23141 -10.95987 -10.56028 -10.33222 -10.02086 -9.99241 -9.89785 -9.59991 -9.30388 -9.18750 -5.01637 0.00042 0.16159 0.24385 0.34540 0.94931 1.30477 1.63205 1.68145 1.78371 1.88398 2.04375 2.16378 2.57653 2.71921 3.23789 3.28802 3.48817 3.63408 3.67844 3.72352 3.72736 3.76540 3.87815 3.89092 3.99229 4.04728 4.08218 4.11986 4.16457 4.18360 4.27088 4.31656 4.32584 4.35149 4.43208 4.45375 4.59917 4.62328 4.69659 4.80581 4.80886 4.89029 4.94096 4.95613 4.96034 5.04689 5.05230 5.06351 5.11984 5.17195 5.19272 5.22148 5.30617 5.38708 5.49963 5.53252 5.69746 5.75999 5.79765 5.94031 6.03595 6.40873 6.60661 6.78371 7.32968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.059 4.059 3 Si 0.812 3.188 4 C 0.018 3.982 5 C -0.226 4.226 6 C -0.201 4.201 7 C -0.015 4.015 8 N -0.394 5.394 9 C 0.118 3.882 10 C -0.127 4.127 11 C -0.096 4.096 12 C -0.065 4.065 13 C -0.098 4.098 14 C 0.516 3.484 15 O -0.573 6.573 16 N -0.703 5.703 17 C 0.118 3.882 18 H 0.085 0.915 19 C -0.124 4.124 20 C -0.068 4.068 21 H 0.113 0.887 22 C -0.044 4.044 23 C -0.130 4.130 24 C -0.090 4.090 25 C -0.170 4.170 26 C 0.072 3.928 27 F -0.155 7.155 28 C -0.159 4.159 29 C -0.143 4.143 30 C -0.092 4.092 31 C -0.106 4.106 32 H 0.400 0.600 33 H 0.090 0.910 34 H -0.309 1.309 35 H -0.281 1.281 36 H 0.139 0.861 37 H 0.158 0.842 38 H 0.186 0.814 39 H 0.121 0.879 40 H 0.143 0.857 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.417 0.583 44 H 0.101 0.899 45 H 0.089 0.911 46 H 0.148 0.852 47 H 0.154 0.846 48 H 0.140 0.860 49 H 0.143 0.857 50 H 0.067 0.933 51 H 0.097 0.903 52 H 0.148 0.852 53 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.206 -3.167 -5.025 6.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.168 4.168 3 Si 0.716 3.284 4 C -0.092 4.092 5 C -0.251 4.251 6 C -0.225 4.225 7 C -0.142 4.142 8 N -0.066 5.066 9 C 0.029 3.971 10 C -0.146 4.146 11 C -0.114 4.114 12 C -0.065 4.065 13 C -0.137 4.137 14 C 0.303 3.697 15 O -0.451 6.451 16 N -0.356 5.356 17 C 0.012 3.988 18 H 0.104 0.896 19 C -0.162 4.162 20 C -0.086 4.086 21 H 0.131 0.869 22 C -0.044 4.044 23 C -0.147 4.147 24 C -0.108 4.108 25 C -0.189 4.189 26 C 0.053 3.947 27 F -0.134 7.134 28 C -0.177 4.177 29 C -0.181 4.181 30 C -0.110 4.110 31 C -0.125 4.125 32 H 0.251 0.749 33 H 0.107 0.893 34 H -0.237 1.237 35 H -0.208 1.208 36 H 0.157 0.843 37 H 0.176 0.824 38 H 0.203 0.797 39 H 0.139 0.861 40 H 0.160 0.840 41 H 0.150 0.850 42 H 0.153 0.847 43 H 0.254 0.746 44 H 0.119 0.881 45 H 0.107 0.893 46 H 0.166 0.834 47 H 0.171 0.829 48 H 0.158 0.842 49 H 0.161 0.839 50 H 0.086 0.914 51 H 0.116 0.884 52 H 0.166 0.834 53 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.759 -2.278 -4.193 5.086 hybrid contribution -0.235 -0.943 0.714 1.206 sum -1.994 -3.221 -3.479 5.143 Atomic orbital electron populations 1.86512 1.16870 1.82357 1.51034 1.24663 0.86102 1.11102 0.94906 0.94537 0.77065 0.72674 0.84152 1.20524 0.97609 0.91258 0.99815 1.20844 1.01114 1.03661 0.99444 1.21157 1.01986 0.97433 1.01913 1.22406 0.95283 1.03749 0.92803 1.41631 1.21224 1.21199 1.22589 1.17782 0.86542 0.97907 0.94870 1.21088 0.92710 1.00740 1.00048 1.21058 0.97214 0.96983 0.96165 1.19581 0.95164 0.98364 0.93419 1.20765 0.91806 0.96983 1.04162 1.20947 0.82165 0.89416 0.77151 1.90764 1.76897 1.19722 1.57758 1.45597 1.17724 1.11408 1.60827 1.21775 0.88843 0.93371 0.94796 0.89635 1.23374 0.94610 1.02363 0.95842 1.21647 0.88629 1.00362 0.97970 0.86880 1.19728 0.95429 0.92498 0.96785 1.21400 0.96298 0.97390 0.99654 1.21332 0.92906 0.99346 0.97204 1.21410 1.02204 0.91720 1.03525 1.18073 0.87987 0.85050 1.03596 1.91473 1.69041 1.58529 1.94330 1.21232 0.91183 1.01477 1.03826 1.23568 0.95943 0.99108 0.99498 1.21079 0.91952 0.97732 1.00230 1.20968 0.99620 0.98123 0.93832 0.74876 0.89266 1.23717 1.20827 0.84340 0.82439 0.79723 0.86069 0.83961 0.85038 0.84676 0.74552 0.88069 0.89258 0.83435 0.82879 0.84170 0.83880 0.91375 0.88418 0.83421 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.92 10.90 -148.98 -1.62 -4.54 16 2 C -0.06 -0.25 2.46 71.24 0.18 -0.08 16 3 Si 0.81 1.32 30.95 68.60 2.12 3.44 16 4 C 0.02 0.20 6.13 41.04 0.25 0.45 16 5 C -0.23 -2.51 9.39 22.16 0.21 -2.30 16 6 C -0.20 -1.83 10.86 22.15 0.24 -1.59 16 7 C -0.01 -0.12 11.21 83.18 0.93 0.81 16 8 N -0.39 -4.06 2.84 -333.41 -0.95 -5.00 16 9 C 0.12 0.96 4.69 38.08 0.18 1.14 16 10 C -0.13 -0.83 9.77 22.38 0.22 -0.61 16 11 C -0.10 -0.23 9.69 22.25 0.22 -0.02 16 12 C -0.06 0.00 4.38 -19.85 -0.09 -0.08 16 13 C -0.10 0.72 5.83 29.10 0.17 0.89 16 14 C 0.52 -0.86 7.82 87.66 0.69 -0.17 16 15 O -0.57 -4.99 15.63 -3.03 -0.05 -5.03 16 16 N -0.70 4.99 5.26 -440.03 -2.32 2.68 16 17 C 0.12 -0.61 4.33 45.52 0.20 -0.41 16 18 H 0.09 -0.02 7.46 -2.39 -0.02 -0.04 16 19 C -0.12 1.04 7.29 31.12 0.23 1.27 16 20 C -0.07 0.50 3.86 -11.01 -0.04 0.46 16 21 H 0.11 -1.12 8.09 -2.38 -0.02 -1.14 16 22 C -0.04 0.15 5.29 -19.87 -0.11 0.04 16 23 C -0.13 0.49 8.62 22.28 0.19 0.69 16 24 C -0.09 0.25 10.04 22.26 0.22 0.47 16 25 C -0.17 -0.12 10.03 22.31 0.22 0.10 16 26 C 0.07 0.24 7.30 22.37 0.16 0.41 16 27 F -0.15 -1.08 17.27 44.97 0.78 -0.31 16 28 C -0.16 0.04 9.69 22.31 0.22 0.25 16 29 C -0.14 0.78 7.25 31.12 0.23 1.01 16 30 C -0.09 -0.09 9.69 22.25 0.22 0.13 16 31 C -0.11 -0.52 8.56 22.38 0.19 -0.33 16 32 H 0.40 -1.71 8.74 -74.06 -0.65 -2.36 16 33 H 0.09 0.01 7.96 -2.38 -0.02 -0.01 16 34 H -0.31 -3.39 7.11 99.48 0.71 -2.68 16 35 H -0.28 -1.61 6.97 99.48 0.69 -0.92 16 36 H 0.14 1.32 6.50 -2.91 -0.02 1.31 16 37 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 38 H 0.19 0.52 8.06 -2.91 -0.02 0.50 16 39 H 0.12 0.75 8.06 -2.91 -0.02 0.73 16 40 H 0.14 -0.23 8.06 -2.91 -0.02 -0.25 16 41 H 0.13 -1.61 8.08 -2.39 -0.02 -1.63 16 42 H 0.14 -1.74 8.08 -2.39 -0.02 -1.76 16 43 H 0.42 -5.58 8.70 -92.70 -0.81 -6.39 16 44 H 0.10 -0.83 7.73 -2.39 -0.02 -0.85 16 45 H 0.09 -0.89 8.14 -2.38 -0.02 -0.91 16 46 H 0.15 -1.12 6.64 -2.91 -0.02 -1.14 16 47 H 0.15 -1.11 8.06 -2.91 -0.02 -1.13 16 48 H 0.14 -0.20 8.06 -2.91 -0.02 -0.22 16 49 H 0.14 -0.44 8.05 -2.91 -0.02 -0.47 16 50 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 51 H 0.10 -0.56 6.29 -2.39 -0.02 -0.58 16 52 H 0.15 -0.57 8.06 -2.91 -0.02 -0.60 16 53 H 0.12 0.49 8.06 -2.91 -0.02 0.47 16 Total: 0.00 -28.47 444.19 2.61 -25.85 By element: Atomic # 1 Polarization: -19.15 SS G_CDS: -0.47 Total: -19.62 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 5.12 Total: 2.53 kcal Atomic # 7 Polarization: 0.94 SS G_CDS: -3.26 Total: -2.32 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -1.67 Total: -9.58 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.78 Total: -0.31 kcal Atomic # 14 Polarization: 1.32 SS G_CDS: 2.12 Total: 3.44 kcal Total: -28.47 2.61 -25.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705262_13287746.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.663 kcal (2) G-P(sol) polarization free energy of solvation -28.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds