Wall clock time and date at job start Tue Mar 9 2021 12:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86310 * 109.47134 * 2 1 4 4 C 1.50694 * 109.47460 * 120.00276 * 2 1 3 5 5 C 1.38352 * 120.35134 * 65.02143 * 4 2 1 6 6 C 1.40019 * 118.29215 * 179.97438 * 5 4 2 7 7 C 1.47848 * 120.56013 * 180.29603 * 6 5 4 8 8 O 1.21553 * 119.99800 * 359.72243 * 7 6 5 9 9 N 1.34778 * 119.99828 * 179.71808 * 7 6 5 10 10 C 1.46500 * 119.99844 * 180.02562 * 9 7 6 11 11 H 1.09002 * 112.84891 * 23.80294 * 10 9 7 12 12 C 1.53774 * 113.61528 * 154.99977 * 10 9 7 13 13 C 1.53786 * 87.08170 * 89.11871 * 12 10 9 14 14 H 1.09006 * 113.61268 * 270.80358 * 13 12 10 15 15 C 1.50701 * 113.61947 * 139.98074 * 13 12 10 16 16 C 1.38218 * 119.98606 * 119.99914 * 15 13 12 17 17 C 1.38272 * 120.04798 * 179.97438 * 16 15 13 18 18 C 1.38169 * 120.02616 * 359.97438 * 17 16 15 19 19 C 1.38480 * 119.97782 * 0.02737 * 18 17 16 20 20 F 1.35102 * 120.02874 * 179.97438 * 19 18 17 21 21 C 1.38218 * 119.98306 * 299.72843 * 15 13 12 22 22 C 1.53781 * 113.61412 * 252.50279 * 10 9 7 23 23 C 1.39525 * 118.88195 * 0.02562 * 6 5 4 24 24 N 1.31689 * 120.56677 * 359.97438 * 23 6 5 25 25 C 1.31926 * 121.87966 * 0.02562 * 24 23 6 26 26 H 0.96696 * 114.00206 * 59.99480 * 1 2 3 27 27 H 1.09004 * 109.47241 * 240.00786 * 2 1 3 28 28 H 1.48503 * 109.99534 * 60.00501 * 3 2 1 29 29 H 1.48492 * 109.99914 * 181.32072 * 3 2 1 30 30 H 1.08005 * 120.85575 * 0.02562 * 5 4 2 31 31 H 0.97002 * 120.00200 * 0.02562 * 9 7 6 32 32 H 1.09004 * 113.61529 * 203.65942 * 12 10 9 33 33 H 1.08997 * 113.61880 * 334.57004 * 12 10 9 34 34 H 1.08001 * 119.97811 * 0.02562 * 16 15 13 35 35 H 1.07994 * 119.98486 * 180.02562 * 17 16 15 36 36 H 1.08003 * 120.01565 * 180.02562 * 18 17 16 37 37 H 1.08003 * 120.01883 * 359.97438 * 21 15 13 38 38 H 1.09000 * 113.61924 * 25.42686 * 22 10 9 39 39 H 1.09006 * 113.61312 * 156.33623 * 22 10 9 40 40 H 1.07998 * 119.71326 * 179.97438 * 23 6 5 41 41 H 1.08004 * 119.46224 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6891 -2.0613 1.4055 6 6 2.1761 -2.6780 2.5644 7 6 1.9517 -4.1204 2.7994 8 8 1.3356 -4.7800 1.9853 9 7 2.4304 -4.7037 3.9161 10 6 2.2086 -6.1330 4.1486 11 1 2.0334 -6.6894 3.2279 12 6 3.2592 -6.7779 5.0678 13 6 2.3509 -6.3908 6.2468 14 1 2.5558 -5.3983 6.6483 15 6 2.2661 -7.4488 7.3165 16 6 2.6675 -7.1599 8.6072 17 6 2.5898 -8.1295 9.5899 18 6 2.1103 -9.3884 9.2826 19 6 1.7080 -9.6791 7.9898 20 9 1.2395 -10.9098 7.6881 21 6 1.7819 -8.7060 7.0078 22 6 1.1783 -6.4248 5.2523 23 6 2.8817 -1.9097 3.4910 24 7 3.0867 -0.6263 3.2791 25 6 2.6398 -0.0187 2.1968 26 1 -0.3933 0.4417 -0.7650 27 1 1.7923 -0.5137 -0.8901 28 1 1.5615 2.4679 1.2086 29 1 3.5345 1.7703 -0.0322 30 1 1.1392 -2.6258 0.6670 31 1 2.9219 -4.1771 4.5658 32 1 3.3590 -7.8544 4.9288 33 1 4.2178 -6.2592 5.0665 34 1 3.0412 -6.1758 8.8486 35 1 2.9032 -7.9025 10.5981 36 1 2.0493 -10.1456 10.0504 37 1 1.4639 -8.9301 6.0003 38 1 0.4570 -5.6211 5.4001 39 1 0.7093 -7.4049 5.1638 40 1 3.2630 -2.3716 4.3897 41 1 2.8307 1.0358 2.0624 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705262_13287814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:21 Heat of formation + Delta-G solvation = -13.593449 kcal Electronic energy + Delta-G solvation = -26302.819776 eV Core-core repulsion = 22257.791060 eV Total energy + Delta-G solvation = -4045.028716 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.94331 -42.14137 -41.32149 -40.13637 -38.70594 -37.86225 -34.98401 -33.98085 -33.21251 -31.71914 -31.47680 -27.35247 -26.92502 -26.75323 -25.51761 -23.91856 -23.68277 -22.74748 -21.86264 -20.36541 -19.19304 -18.62256 -18.52871 -18.17285 -17.88847 -17.28684 -17.06319 -16.89314 -16.65369 -16.37646 -16.20195 -15.67745 -15.42341 -15.35551 -14.92910 -14.80096 -14.75736 -14.42928 -14.28266 -14.19252 -13.94092 -13.82122 -13.51848 -13.00703 -12.95598 -12.64655 -12.48502 -12.18758 -12.00986 -11.74585 -11.54775 -11.25252 -11.19437 -10.84317 -10.60648 -10.28451 -10.18562 -9.90297 -9.63002 -4.97080 -0.74073 -0.15024 0.15648 0.21690 1.22281 1.51547 1.64355 1.81275 1.91675 2.47127 2.56163 2.92422 3.18187 3.20694 3.39835 3.43733 3.56200 3.56579 3.60911 3.66729 3.72055 3.79977 3.91621 3.99447 4.05320 4.13958 4.21855 4.26292 4.40621 4.43426 4.56847 4.69956 4.72689 4.74944 4.82236 4.84277 4.91589 4.97994 5.07352 5.09897 5.15721 5.17404 5.34463 5.44344 5.58890 5.92743 6.27590 6.46948 6.84569 6.95237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.081 4.081 3 Si 0.780 3.220 4 C -0.141 4.141 5 C 0.001 3.999 6 C -0.192 4.192 7 C 0.570 3.430 8 O -0.569 6.569 9 N -0.689 5.689 10 C 0.114 3.886 11 H 0.089 0.911 12 C -0.124 4.124 13 C -0.066 4.066 14 H 0.125 0.875 15 C -0.046 4.046 16 C -0.125 4.125 17 C -0.091 4.091 18 C -0.169 4.169 19 C 0.072 3.928 20 F -0.156 7.156 21 C -0.160 4.160 22 C -0.145 4.145 23 C 0.145 3.855 24 N -0.496 5.496 25 C 0.110 3.890 26 H 0.407 0.593 27 H 0.100 0.900 28 H -0.288 1.288 29 H -0.281 1.281 30 H 0.147 0.853 31 H 0.417 0.583 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.199 0.801 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.856 4.700 -0.119 5.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.191 4.191 3 Si 0.684 3.316 4 C -0.143 4.143 5 C -0.025 4.025 6 C -0.197 4.197 7 C 0.357 3.643 8 O -0.448 6.448 9 N -0.341 5.341 10 C 0.009 3.991 11 H 0.107 0.893 12 C -0.162 4.162 13 C -0.084 4.084 14 H 0.143 0.857 15 C -0.046 4.046 16 C -0.143 4.143 17 C -0.108 4.108 18 C -0.188 4.188 19 C 0.053 3.947 20 F -0.134 7.134 21 C -0.179 4.179 22 C -0.184 4.184 23 C -0.014 4.014 24 N -0.203 5.203 25 C -0.046 4.046 26 H 0.259 0.741 27 H 0.118 0.882 28 H -0.215 1.215 29 H -0.207 1.207 30 H 0.165 0.835 31 H 0.256 0.744 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.172 0.828 35 H 0.173 0.827 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.216 0.784 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.439 4.929 0.884 6.075 hybrid contribution -0.578 -1.399 -0.208 1.528 sum 2.862 3.529 0.675 4.594 Atomic orbital electron populations 1.86438 1.16876 1.82607 1.51627 1.24844 0.86272 1.11784 0.96159 0.93842 0.77706 0.74769 0.85278 1.20696 1.00747 0.94647 0.98254 1.21721 0.91740 0.93596 0.95451 1.21057 1.05146 0.94845 0.98646 1.18067 0.78305 0.86342 0.81574 1.90803 1.42168 1.65302 1.46538 1.45411 1.56515 1.10179 1.21998 1.21904 0.97768 0.80769 0.98641 0.89285 1.23383 0.97897 1.02257 0.92638 1.21690 0.96916 0.98026 0.91730 0.85742 1.19690 0.96404 0.93320 0.95193 1.21503 0.99895 1.00969 0.91961 1.21364 0.96777 0.91559 1.01132 1.21424 1.02513 0.99805 0.95046 1.18057 1.00891 0.80494 0.95301 1.91476 1.86579 1.41351 1.94041 1.21140 1.03658 0.93378 0.99684 1.23577 0.96793 1.03121 0.94906 1.23520 0.91200 0.88685 0.97960 1.67735 1.20279 1.11539 1.20777 1.22912 0.92831 0.99953 0.88881 0.74074 0.88245 1.21524 1.20722 0.83494 0.74446 0.88271 0.88583 0.82791 0.82701 0.84151 0.84338 0.91022 0.88807 0.78417 0.82549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.70 12.82 -148.98 -1.91 -1.21 16 2 C -0.08 0.17 2.81 71.23 0.20 0.37 16 3 Si 0.78 -3.58 29.88 68.60 2.05 -1.53 16 4 C -0.14 -0.52 5.39 -19.81 -0.11 -0.63 16 5 C 0.00 0.01 9.38 22.73 0.21 0.22 16 6 C -0.19 -0.60 5.89 -19.99 -0.12 -0.72 16 7 C 0.57 2.49 7.78 86.79 0.68 3.16 16 8 O -0.57 -7.31 16.02 -3.88 -0.06 -7.38 16 9 N -0.69 2.19 5.22 -442.91 -2.31 -0.12 16 10 C 0.11 -0.29 4.32 45.52 0.20 -0.09 16 11 H 0.09 0.20 7.46 -2.39 -0.02 0.18 16 12 C -0.12 0.82 7.29 31.12 0.23 1.05 16 13 C -0.07 0.43 3.86 -11.01 -0.04 0.39 16 14 H 0.12 -1.33 8.09 -2.38 -0.02 -1.35 16 15 C -0.05 0.12 5.29 -19.87 -0.11 0.02 16 16 C -0.13 0.51 9.71 22.27 0.22 0.73 16 17 C -0.09 0.25 10.04 22.26 0.22 0.47 16 18 C -0.17 -0.20 10.03 22.31 0.22 0.02 16 19 C 0.07 0.31 7.30 22.38 0.16 0.48 16 20 F -0.16 -1.28 17.27 44.97 0.78 -0.51 16 21 C -0.16 -0.17 8.60 22.31 0.19 0.03 16 22 C -0.15 0.45 7.25 31.12 0.23 0.68 16 23 C 0.14 -0.01 10.71 85.02 0.91 0.90 16 24 N -0.50 -2.32 10.35 -194.75 -2.01 -4.34 16 25 C 0.11 0.51 9.84 84.71 0.83 1.35 16 26 H 0.41 -4.87 8.74 -74.06 -0.65 -5.51 16 27 H 0.10 -0.60 7.96 -2.39 -0.02 -0.62 16 28 H -0.29 -0.66 7.05 99.48 0.70 0.05 16 29 H -0.28 -0.10 7.11 99.48 0.71 0.61 16 30 H 0.15 0.88 7.74 -2.91 -0.02 0.86 16 31 H 0.42 -4.14 6.77 -92.71 -0.63 -4.77 16 32 H 0.10 -0.56 7.73 -2.39 -0.02 -0.58 16 33 H 0.10 -0.89 8.14 -2.39 -0.02 -0.91 16 34 H 0.15 -1.43 8.05 -2.91 -0.02 -1.46 16 35 H 0.16 -1.17 8.06 -2.91 -0.02 -1.19 16 36 H 0.14 -0.14 8.06 -2.91 -0.02 -0.16 16 37 H 0.14 -0.07 6.64 -2.91 -0.02 -0.09 16 38 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 39 H 0.09 -0.21 6.29 -2.38 -0.02 -0.22 16 40 H 0.20 -1.78 6.42 -2.91 -0.02 -1.80 16 41 H 0.16 0.46 4.87 -2.91 -0.01 0.44 16 Total: 0.00 -23.82 350.37 0.52 -23.30 By element: Atomic # 1 Polarization: -16.50 SS G_CDS: -0.14 Total: -16.64 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 4.13 Total: 8.43 kcal Atomic # 7 Polarization: -0.13 SS G_CDS: -4.33 Total: -4.46 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -1.97 Total: -8.59 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.78 Total: -0.51 kcal Atomic # 14 Polarization: -3.58 SS G_CDS: 2.05 Total: -1.53 kcal Total: -23.82 0.52 -23.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705262_13287814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.704 kcal (2) G-P(sol) polarization free energy of solvation -23.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds